Wall clock time and date at job start Mon Mar 30 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.46912 * 2 1 4 4 C 1.38165 * 119.97001 * 269.97701 * 3 2 1 5 5 C 1.38708 * 119.94360 * 180.02562 * 4 3 2 6 6 O 1.35902 * 120.05914 * 180.02562 * 5 4 3 7 7 C 1.38764 * 119.88654 * 359.72696 * 5 4 3 8 8 C 1.38119 * 119.94042 * 0.54981 * 7 5 4 9 9 C 1.50702 * 119.96558 * 179.75142 * 8 7 5 10 10 H 1.09004 * 109.46713 * 179.72112 * 9 8 7 11 11 C 1.50697 * 109.47257 * 59.72301 * 9 8 7 12 12 H 1.07994 * 120.00109 * 359.97438 * 11 9 8 13 13 C 1.37877 * 119.99699 * 179.97438 * 11 9 8 14 14 N 1.31518 * 120.00127 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99831 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47160 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47047 * 120.00396 * 15 13 11 18 18 H 1.48505 * 109.47109 * 240.00137 * 15 13 11 19 19 C 1.53002 * 109.47317 * 299.71807 * 9 8 7 20 20 C 1.53002 * 117.49773 * 300.00698 * 19 9 8 21 21 C 1.53000 * 60.02940 * 252.51785 * 20 19 9 22 22 C 1.38242 * 119.97261 * 90.00314 * 3 2 1 23 23 H 1.08999 * 109.46922 * 60.00301 * 1 2 3 24 24 H 1.08999 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47109 * 300.00166 * 1 2 3 26 26 H 1.08995 * 109.47216 * 240.00192 * 2 1 3 27 27 H 1.08997 * 109.47437 * 119.99722 * 2 1 3 28 28 H 1.07997 * 120.02821 * 359.97438 * 4 3 2 29 29 H 0.96693 * 114.00014 * 89.99827 * 6 5 4 30 30 H 1.08000 * 120.02532 * 180.29819 * 7 5 4 31 31 H 0.96999 * 119.99950 * 180.02562 * 14 13 11 32 32 H 1.09000 * 115.55766 * 85.69014 * 19 9 8 33 33 H 1.09002 * 117.49918 * 145.01819 * 20 19 9 34 34 H 1.09002 * 117.49754 * 0.02562 * 20 19 9 35 35 H 1.09008 * 117.49673 * 107.47884 * 21 20 19 36 36 H 1.08999 * 117.49942 * 252.47315 * 21 20 19 37 37 H 1.08007 * 119.94357 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0715 -1.1969 5 6 2.7256 3.3791 -1.1963 6 8 2.9526 4.0214 -2.3722 7 6 2.9505 4.0323 0.0071 8 6 2.7240 3.3756 1.2009 9 6 2.9734 4.0827 2.5082 10 1 2.7362 3.4127 3.3346 11 6 2.1020 5.3094 2.5900 12 1 1.4347 5.5530 1.7766 13 6 2.1568 6.1208 3.7034 14 7 2.9699 5.8245 4.6937 15 14 1.0771 7.6419 3.8046 16 1 0.2592 7.7514 2.5700 17 1 0.1809 7.5352 4.9837 18 1 1.9327 8.8481 3.9407 19 6 4.4443 4.4953 2.5923 20 6 5.4945 3.3846 2.5265 21 6 5.2188 4.0982 3.8515 22 6 2.2625 2.0720 1.1975 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0835 1.5621 -2.1322 29 1 2.1856 4.5020 -2.7123 30 1 3.3063 5.0521 0.0102 31 1 3.0081 6.3951 5.4772 32 1 4.6921 5.4503 2.1289 33 1 6.4332 3.6088 2.0199 34 1 5.1375 2.3599 2.4228 35 1 4.6801 3.5432 4.6195 36 1 5.9763 4.7917 4.2168 37 1 2.0817 1.5617 2.1321 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260294117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:22 Heat of formation + Delta-G solvation = -16.240898 kcal Electronic energy + Delta-G solvation = -17780.458363 eV Core-core repulsion = 15101.781485 eV Total energy + Delta-G solvation = -2678.676878 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40026 -37.01852 -36.17321 -33.55899 -32.50545 -30.36822 -28.60819 -27.12839 -23.78791 -23.35113 -21.48312 -21.13621 -20.53569 -18.67583 -17.28323 -16.48628 -15.70274 -15.29152 -14.79587 -14.52546 -14.08856 -13.68278 -13.50677 -12.94059 -12.82318 -12.51994 -11.90230 -11.79489 -11.45298 -11.25757 -10.99598 -10.93143 -10.85832 -10.61503 -10.46394 -10.15149 -10.05799 -9.80176 -9.58151 -8.75902 -8.71768 -8.32309 -7.94978 -7.79686 -6.01884 -4.09067 1.89583 2.04467 3.27170 3.35976 3.39567 4.23275 4.43252 4.72159 5.07972 5.12229 5.23375 5.28735 5.53786 5.58171 5.76529 5.86098 5.90610 5.98513 6.04396 6.08405 6.20395 6.31902 6.33907 6.43035 6.50884 6.55682 6.78843 6.91842 7.05177 7.07412 7.16241 7.25242 7.26545 7.48534 7.57977 7.79208 7.94747 8.13745 8.32993 8.93181 9.55169 11.03827 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.007299 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.163902 B = 3835.339171 C = 4032.570311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.075 4.075 4 C -0.170 4.170 5 C 0.094 3.906 6 O -0.505 6.505 7 C -0.132 4.132 8 C -0.007 4.007 9 C 0.104 3.896 10 H 0.037 0.963 11 C -0.515 4.515 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.873 5.873 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.081 4.081 20 C -0.225 4.225 21 C -0.137 4.137 22 C -0.135 4.135 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.382 0.618 30 H 0.126 0.874 31 H 0.259 0.741 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.675 -7.287 -7.709 10.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.075 4.075 4 C -0.188 4.188 5 C 0.050 3.950 6 O -0.314 6.314 7 C -0.151 4.151 8 C -0.007 4.007 9 C 0.086 3.914 10 H 0.055 0.945 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.136 4.136 14 N -0.510 5.510 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.100 4.100 20 C -0.263 4.263 21 C -0.174 4.174 22 C -0.153 4.153 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.131 0.869 29 H 0.236 0.764 30 H 0.144 0.856 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.047 -7.464 -7.463 10.607 hybrid contribution -0.952 1.224 0.087 1.553 sum -2.000 -6.240 -7.376 9.866 Atomic orbital electron populations 1.21741 0.95089 1.01086 1.02362 1.20477 0.95937 0.93136 1.02214 1.19595 0.99417 0.95679 0.92840 1.20938 1.04957 0.95392 0.97524 1.18508 1.00090 0.91442 0.84962 1.84788 1.40357 1.69342 1.36942 1.21299 1.02118 1.00702 0.90971 1.20388 0.91349 0.92294 0.96672 1.17550 0.90778 0.94964 0.88125 0.94494 1.21023 1.22719 1.08079 1.03436 0.92400 1.24958 0.95268 0.97625 0.95699 1.70036 1.36285 1.37798 1.06873 0.86598 0.80554 0.83240 0.77994 1.19833 1.21084 1.21072 1.22178 0.92667 0.95404 0.99743 1.23057 1.01132 0.98121 1.03956 1.22443 1.02105 1.01977 0.90849 1.21003 1.02306 0.95152 0.96865 0.92796 0.92901 0.92284 0.91659 0.91254 0.86874 0.76395 0.85627 0.93153 0.89967 0.91084 0.90480 0.89638 0.91174 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 37.16 0.37 -1.34 16 2 C -0.08 -1.04 6.06 -27.88 -0.17 -1.21 16 3 C -0.08 -1.24 5.13 -104.64 -0.54 -1.77 16 4 C -0.17 -2.81 9.64 -39.43 -0.38 -3.19 16 5 C 0.09 1.69 6.71 -39.21 -0.26 1.42 16 6 O -0.51 -8.02 13.50 -19.43 -0.26 -8.28 16 7 C -0.13 -2.69 8.75 -39.43 -0.35 -3.03 16 8 C -0.01 -0.15 4.39 -104.65 -0.46 -0.60 16 9 C 0.10 2.50 2.10 -92.92 -0.20 2.30 16 10 H 0.04 0.96 7.63 -51.93 -0.40 0.56 16 11 C -0.51 -13.53 8.21 -34.44 -0.28 -13.82 16 12 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 13 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 14 N -0.87 -23.73 11.44 55.43 0.63 -23.10 16 15 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.08 -1.87 3.88 -90.58 -0.35 -2.22 16 20 C -0.23 -4.57 9.87 -26.73 -0.26 -4.83 16 21 C -0.14 -2.99 9.06 -26.70 -0.24 -3.24 16 22 C -0.14 -2.55 9.32 -39.56 -0.37 -2.92 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 27 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 28 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.38 4.20 9.06 45.56 0.41 4.61 16 30 H 0.13 2.64 8.05 -52.49 -0.42 2.22 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.08 2.01 8.11 -51.93 -0.42 1.59 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.09 1.96 8.05 -51.92 -0.42 1.54 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.12 2.09 7.94 -52.48 -0.42 1.67 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -28.20 311.94 -8.53 -36.72 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.99 Total: 6.97 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: -3.58 Total: -32.74 kcal Atomic # 7 Polarization: -23.73 SS G_CDS: 0.63 Total: -23.10 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.26 Total: -8.28 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.20 -8.53 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260294117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.482 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds