Wall clock time and date at job start Mon Mar 30 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.46912 * 2 1 4 4 C 1.38165 * 119.97001 * 269.97701 * 3 2 1 5 5 C 1.38708 * 119.94360 * 180.02562 * 4 3 2 6 6 O 1.35902 * 120.05914 * 180.02562 * 5 4 3 7 7 C 1.38764 * 119.88654 * 359.72696 * 5 4 3 8 8 C 1.38119 * 119.94042 * 0.54981 * 7 5 4 9 9 C 1.50702 * 119.96558 * 179.75142 * 8 7 5 10 10 H 1.09004 * 109.46713 * 179.72112 * 9 8 7 11 11 C 1.50697 * 109.47257 * 59.72301 * 9 8 7 12 12 H 1.07994 * 120.00109 * 359.97438 * 11 9 8 13 13 C 1.37877 * 119.99699 * 179.97438 * 11 9 8 14 14 N 1.31518 * 120.00127 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99831 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47160 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47047 * 120.00396 * 15 13 11 18 18 H 1.48505 * 109.47109 * 240.00137 * 15 13 11 19 19 C 1.53002 * 109.47317 * 299.71807 * 9 8 7 20 20 C 1.53002 * 117.49773 * 300.00698 * 19 9 8 21 21 C 1.53000 * 60.02940 * 252.51785 * 20 19 9 22 22 C 1.38242 * 119.97261 * 90.00314 * 3 2 1 23 23 H 1.08999 * 109.46922 * 60.00301 * 1 2 3 24 24 H 1.08999 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47109 * 300.00166 * 1 2 3 26 26 H 1.08995 * 109.47216 * 240.00192 * 2 1 3 27 27 H 1.08997 * 109.47437 * 119.99722 * 2 1 3 28 28 H 1.07997 * 120.02821 * 359.97438 * 4 3 2 29 29 H 0.96693 * 114.00014 * 89.99827 * 6 5 4 30 30 H 1.08000 * 120.02532 * 180.29819 * 7 5 4 31 31 H 0.96999 * 119.99950 * 180.02562 * 14 13 11 32 32 H 1.09000 * 115.55766 * 85.69014 * 19 9 8 33 33 H 1.09002 * 117.49918 * 145.01819 * 20 19 9 34 34 H 1.09002 * 117.49754 * 0.02562 * 20 19 9 35 35 H 1.09008 * 117.49673 * 107.47884 * 21 20 19 36 36 H 1.08999 * 117.49942 * 252.47315 * 21 20 19 37 37 H 1.08007 * 119.94357 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0715 -1.1969 5 6 2.7256 3.3791 -1.1963 6 8 2.9526 4.0214 -2.3722 7 6 2.9505 4.0323 0.0071 8 6 2.7240 3.3756 1.2009 9 6 2.9734 4.0827 2.5082 10 1 2.7362 3.4127 3.3346 11 6 2.1020 5.3094 2.5900 12 1 1.4347 5.5530 1.7766 13 6 2.1568 6.1208 3.7034 14 7 2.9699 5.8245 4.6937 15 14 1.0771 7.6419 3.8046 16 1 0.2592 7.7514 2.5700 17 1 0.1809 7.5352 4.9837 18 1 1.9327 8.8481 3.9407 19 6 4.4443 4.4953 2.5923 20 6 5.4945 3.3846 2.5265 21 6 5.2188 4.0982 3.8515 22 6 2.2625 2.0720 1.1975 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0835 1.5621 -2.1322 29 1 2.1856 4.5020 -2.7123 30 1 3.3063 5.0521 0.0102 31 1 3.0081 6.3951 5.4772 32 1 4.6921 5.4503 2.1289 33 1 6.4332 3.6088 2.0199 34 1 5.1375 2.3599 2.4228 35 1 4.6801 3.5432 4.6195 36 1 5.9763 4.7917 4.2168 37 1 2.0817 1.5617 2.1321 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260294117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:22 Heat of formation + Delta-G solvation = -31.072832 kcal Electronic energy + Delta-G solvation = -17781.101524 eV Core-core repulsion = 15101.781485 eV Total energy + Delta-G solvation = -2679.320039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82662 -38.59994 -37.58898 -35.01561 -34.32764 -31.87118 -29.93195 -28.86012 -25.46734 -24.72623 -23.04833 -22.71071 -22.05111 -20.34453 -18.61796 -18.43997 -17.13214 -16.68148 -16.55370 -16.13654 -15.72330 -14.96950 -14.64423 -14.57024 -14.38803 -13.81097 -13.70215 -13.21817 -12.88702 -12.78538 -12.72395 -12.38860 -12.24812 -12.17436 -11.95006 -11.80474 -11.67663 -11.62415 -11.19322 -10.62373 -10.56758 -10.21059 -9.35845 -9.30291 -8.05293 -6.18326 0.48011 0.61561 1.39159 1.42516 1.52164 2.43690 2.86521 3.21084 3.34738 3.42849 3.93517 4.09958 4.23847 4.34489 4.38996 4.48698 4.49041 4.58473 4.62475 4.78101 4.80217 4.89377 4.99011 5.11546 5.14864 5.20297 5.30981 5.32639 5.44175 5.47870 5.55325 5.62274 5.66127 5.74588 5.86308 6.08452 6.11978 6.38664 6.88430 6.94378 7.47799 8.98882 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.007299 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.163902 B = 3835.339171 C = 4032.570311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.064 4.064 4 C -0.164 4.164 5 C 0.101 3.899 6 O -0.509 6.509 7 C -0.155 4.155 8 C -0.027 4.027 9 C 0.110 3.890 10 H 0.007 0.993 11 C -0.528 4.528 12 H 0.047 0.953 13 C 0.023 3.977 14 N -0.895 5.895 15 Si 0.946 3.054 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.099 4.099 20 C -0.193 4.193 21 C -0.139 4.139 22 C -0.150 4.150 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.145 0.855 29 H 0.405 0.595 30 H 0.106 0.894 31 H 0.259 0.741 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 -8.648 -9.499 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.064 4.064 4 C -0.183 4.183 5 C 0.057 3.943 6 O -0.321 6.321 7 C -0.174 4.174 8 C -0.027 4.027 9 C 0.091 3.909 10 H 0.025 0.975 11 C -0.566 4.566 12 H 0.066 0.934 13 C -0.177 4.177 14 N -0.532 5.532 15 Si 0.772 3.228 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.118 4.118 20 C -0.230 4.230 21 C -0.176 4.176 22 C -0.168 4.168 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.162 0.838 29 H 0.263 0.737 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.498 -8.819 -9.268 12.881 hybrid contribution -0.833 1.619 0.564 1.906 sum -2.332 -7.200 -8.704 11.534 Atomic orbital electron populations 1.21726 0.94095 1.02536 1.01707 1.20575 0.96656 0.90716 1.03705 1.19967 0.97439 0.97247 0.91723 1.21262 1.03581 0.94649 0.98783 1.18513 0.99051 0.92043 0.84689 1.84721 1.42041 1.69603 1.35777 1.21182 1.04045 1.00164 0.91971 1.20169 0.93546 0.93432 0.95592 1.17323 0.90947 0.93721 0.88875 0.97507 1.21270 1.22940 1.09229 1.03151 0.93434 1.25620 0.96490 1.00098 0.95542 1.70140 1.37316 1.38620 1.07137 0.85695 0.79035 0.80156 0.77877 1.19624 1.20743 1.20802 1.21977 0.93102 0.95756 1.00952 1.23042 1.00628 0.97416 1.01923 1.22365 1.01998 1.02402 0.90850 1.21072 1.03028 0.94565 0.98166 0.92545 0.90451 0.93880 0.89335 0.90651 0.83766 0.73724 0.87622 0.93228 0.92002 0.88958 0.89817 0.91113 0.90695 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.89 71.98 0.71 -2.22 16 2 C -0.08 -1.78 6.06 29.85 0.18 -1.60 16 3 C -0.06 -1.95 5.13 -19.88 -0.10 -2.05 16 4 C -0.16 -4.95 9.64 22.36 0.22 -4.74 16 5 C 0.10 3.48 6.71 22.51 0.15 3.63 16 6 O -0.51 -15.04 13.50 -92.44 -1.25 -16.29 16 7 C -0.15 -6.36 8.75 22.37 0.20 -6.17 16 8 C -0.03 -1.18 4.39 -19.88 -0.09 -1.27 16 9 C 0.11 5.48 2.10 -12.29 -0.03 5.46 16 10 H 0.01 0.37 7.63 -2.39 -0.02 0.36 16 11 C -0.53 -28.83 8.21 25.60 0.21 -28.62 16 12 H 0.05 2.62 7.59 -2.91 -0.02 2.60 16 13 C 0.02 1.28 5.30 84.65 0.45 1.73 16 14 N -0.89 -50.02 11.44 21.45 0.25 -49.77 16 15 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 C -0.10 -4.72 3.88 -10.77 -0.04 -4.76 16 20 C -0.19 -7.76 9.87 30.60 0.30 -7.46 16 21 C -0.14 -6.22 9.06 30.62 0.28 -5.94 16 22 C -0.15 -5.65 9.32 22.28 0.21 -5.44 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 27 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 28 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 29 H 0.40 7.91 9.06 -74.06 -0.67 7.24 16 30 H 0.11 4.64 8.05 -2.91 -0.02 4.62 16 31 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.06 3.16 8.11 -2.39 -0.02 3.14 16 33 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.07 3.35 8.05 -2.38 -0.02 3.33 16 36 H 0.07 3.22 8.14 -2.39 -0.02 3.21 16 37 H 0.11 4.20 7.94 -2.91 -0.02 4.18 16 Total: -1.00 -61.46 311.94 4.04 -57.41 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.37 Total: 22.63 kcal Atomic # 6 Polarization: -62.09 SS G_CDS: 2.64 Total: -59.44 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.25 Total: -49.77 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -1.25 Total: -16.29 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -61.46 4.04 -57.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260294117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.341 kcal (2) G-P(sol) polarization free energy of solvation -61.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds