Wall clock time and date at job start Mon Mar 30 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47094 * 2 1 4 4 C 1.38164 * 119.96961 * 93.51364 * 3 2 1 5 5 C 1.38714 * 119.93837 * 179.97438 * 4 3 2 6 6 O 1.35902 * 120.05088 * 180.02562 * 5 4 3 7 7 C 1.42895 * 117.00267 * 359.97438 * 6 5 4 8 8 C 1.38753 * 119.89151 * 359.97438 * 5 4 3 9 9 C 1.38123 * 119.94431 * 0.02562 * 8 5 4 10 10 C 1.50701 * 119.97334 * 179.97438 * 9 8 5 11 11 C 1.50692 * 115.54831 * 117.69745 * 10 9 8 12 12 H 1.08004 * 120.00324 * 115.47269 * 11 10 9 13 13 C 1.37882 * 119.99984 * 295.47699 * 11 10 9 14 14 N 1.31523 * 119.99735 * 173.08422 * 13 11 10 15 15 Si 1.86795 * 119.99984 * 353.36041 * 13 11 10 16 16 H 1.48498 * 109.47305 * 84.78161 * 15 13 11 17 17 H 1.48507 * 109.47077 * 204.78412 * 15 13 11 18 18 H 1.48495 * 109.47066 * 324.77932 * 15 13 11 19 19 C 1.53002 * 117.49976 * 263.36700 * 10 9 8 20 20 C 1.52999 * 117.49799 * 332.02813 * 10 9 8 21 21 C 1.38250 * 119.96961 * 273.76210 * 3 2 1 22 22 H 1.08994 * 109.47173 * 60.00196 * 1 2 3 23 23 H 1.08998 * 109.46965 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47015 * 300.00060 * 1 2 3 25 25 H 1.09005 * 109.46694 * 239.99596 * 2 1 3 26 26 H 1.09005 * 109.47082 * 120.00263 * 2 1 3 27 27 H 1.07995 * 120.03180 * 0.02562 * 4 3 2 28 28 H 1.09007 * 109.46894 * 299.99727 * 7 6 5 29 29 H 1.08995 * 109.47317 * 59.99861 * 7 6 5 30 30 H 1.09002 * 109.47357 * 180.02562 * 7 6 5 31 31 H 1.08000 * 120.02572 * 180.02562 * 8 5 4 32 32 H 0.97002 * 119.99399 * 180.02562 * 14 13 11 33 33 H 1.08992 * 117.49699 * 214.99866 * 19 10 9 34 34 H 1.09001 * 117.49661 * 0.02649 * 19 10 9 35 35 H 1.09003 * 117.49908 * 359.97435 * 20 10 9 36 36 H 1.09004 * 117.49647 * 144.96825 * 20 10 9 37 37 H 1.07997 * 119.94202 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3316 2.0471 1.1947 5 6 2.7944 3.3547 1.1939 6 8 3.0899 3.9728 2.3676 7 6 2.8998 3.2164 3.5649 8 6 2.9562 4.0303 -0.0073 9 6 2.6556 3.3997 -1.1988 10 6 2.8305 4.1330 -2.5037 11 6 3.8376 3.5379 -3.4537 12 1 3.5146 3.1444 -4.4063 13 6 5.1714 3.4956 -3.1069 14 7 6.0298 2.8567 -3.8716 15 14 5.7580 4.3393 -1.5470 16 1 5.5702 3.4273 -0.3903 17 1 7.1972 4.6804 -1.6799 18 1 4.9730 5.5812 -1.3307 19 6 1.5942 4.7992 -3.1110 20 6 2.6949 5.6568 -2.4814 21 6 2.1885 2.0981 -1.1951 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.2060 1.5188 2.1281 28 1 1.8539 2.9200 3.6453 29 1 3.5285 2.3264 3.5362 30 1 3.1715 3.8259 4.4268 31 1 3.3168 5.0483 -0.0104 32 1 6.9680 2.8267 -3.6273 33 1 1.5094 4.8070 -4.1976 34 1 0.6545 4.7074 -2.5664 35 1 2.4787 6.1289 -1.5230 36 1 3.3344 6.2289 -3.1537 37 1 1.9498 1.6082 -2.1275 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260295606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:46 Heat of formation + Delta-G solvation = 2.254054 kcal Electronic energy + Delta-G solvation = -18087.613142 eV Core-core repulsion = 15409.738265 eV Total energy + Delta-G solvation = -2677.874877 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85579 -37.84437 -36.20049 -33.20254 -32.11605 -29.44078 -29.18700 -26.95970 -25.81933 -23.70082 -22.12552 -21.61282 -20.63447 -18.75500 -17.38430 -16.23210 -15.82826 -15.48869 -15.33257 -14.69047 -14.08218 -14.03470 -13.77879 -13.01087 -12.93630 -12.61251 -12.59015 -11.95949 -11.83497 -11.53874 -11.27979 -11.00364 -10.94974 -10.79877 -10.53111 -10.46382 -10.29367 -10.08095 -9.51479 -9.24505 -8.81324 -8.42970 -7.88083 -7.56051 -6.11888 -4.13960 1.92293 2.07133 3.39962 3.47223 3.52667 3.59380 4.31526 4.48860 4.88490 5.02514 5.14799 5.20777 5.24724 5.31468 5.38856 5.53964 5.55796 5.67016 5.74102 5.92813 5.96311 6.06855 6.08735 6.11096 6.19978 6.30707 6.37152 6.51291 6.54622 6.75754 6.82015 6.93294 7.12806 7.15213 7.40407 7.50266 7.71930 7.87530 8.47373 8.89304 9.51841 10.98550 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.009789 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.128986 B = 2859.600312 C = 3356.957675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.054 4.054 4 C -0.224 4.224 5 C 0.119 3.881 6 O -0.323 6.323 7 C 0.031 3.969 8 C -0.168 4.168 9 C 0.022 3.978 10 C 0.027 3.973 11 C -0.483 4.483 12 H 0.080 0.920 13 C 0.085 3.915 14 N -0.893 5.893 15 Si 0.866 3.134 16 H -0.269 1.269 17 H -0.296 1.296 18 H -0.252 1.252 19 C -0.171 4.171 20 C -0.194 4.194 21 C -0.127 4.127 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.265 0.735 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.805 -2.069 11.551 14.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.054 4.054 4 C -0.243 4.243 5 C 0.075 3.925 6 O -0.237 6.237 7 C -0.065 4.065 8 C -0.186 4.186 9 C 0.022 3.978 10 C 0.026 3.974 11 C -0.519 4.519 12 H 0.098 0.902 13 C -0.118 4.118 14 N -0.529 5.529 15 Si 0.693 3.307 16 H -0.194 1.194 17 H -0.223 1.223 18 H -0.176 1.176 19 C -0.208 4.208 20 C -0.231 4.231 21 C -0.145 4.145 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.535 -1.939 11.556 14.496 hybrid contribution 0.560 0.184 1.024 1.181 sum -7.975 -1.755 12.580 14.998 Atomic orbital electron populations 1.21724 0.95045 1.01142 1.02180 1.20501 0.95864 0.93032 1.02546 1.19585 0.97709 0.95455 0.92654 1.20813 1.10329 0.94839 0.98327 1.18910 0.96644 0.91586 0.85351 1.86036 1.83096 1.41635 1.12905 1.22935 1.00852 0.97012 0.85656 1.20397 1.07438 1.01257 0.89542 1.19555 0.91225 0.93788 0.93267 1.18212 0.97369 0.90103 0.91697 1.20214 0.89581 1.39972 1.02159 0.90214 1.24903 0.96611 0.93923 0.96400 1.69906 1.03451 1.40768 1.38816 0.87037 0.77298 0.82087 0.84252 1.19428 1.22281 1.17625 1.22797 0.92218 1.06218 0.99548 1.23126 1.02846 0.96281 1.00863 1.20736 1.02146 0.94516 0.97095 0.92272 0.92807 0.92964 0.90723 0.91719 0.86496 0.93060 0.93045 0.88861 0.85802 0.92491 0.89407 0.90823 0.90967 0.89326 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.90 37.16 0.37 -1.35 16 2 C -0.08 -1.15 6.06 -27.88 -0.17 -1.32 16 3 C -0.05 -0.96 5.13 -104.64 -0.54 -1.50 16 4 C -0.22 -3.93 8.68 -39.43 -0.34 -4.27 16 5 C 0.12 2.34 6.69 -39.22 -0.26 2.07 16 6 O -0.32 -5.69 10.50 -19.43 -0.20 -5.90 16 7 C 0.03 0.37 9.81 101.05 0.99 1.37 16 8 C -0.17 -3.64 6.76 -39.43 -0.27 -3.91 16 9 C 0.02 0.50 4.07 -104.65 -0.43 0.07 16 10 C 0.03 0.64 1.05 -156.81 -0.16 0.47 16 11 C -0.48 -13.43 9.26 -34.44 -0.32 -13.75 16 12 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 13 C 0.09 2.47 5.46 -17.81 -0.10 2.37 16 14 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 15 Si 0.87 22.39 24.09 -169.99 -4.10 18.29 16 16 H -0.27 -7.08 6.83 56.52 0.39 -6.70 16 17 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 18 H -0.25 -6.15 5.49 56.52 0.31 -5.84 16 19 C -0.17 -3.49 9.94 -26.69 -0.27 -3.75 16 20 C -0.19 -4.17 7.69 -26.69 -0.21 -4.37 16 21 C -0.13 -2.62 9.27 -39.56 -0.37 -2.99 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 26 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 27 H 0.12 1.69 6.30 -52.49 -0.33 1.35 16 28 H 0.05 0.55 7.66 -51.92 -0.40 0.15 16 29 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.12 2.72 5.80 -52.49 -0.30 2.41 16 32 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.45 6.96 -51.93 -0.36 1.09 16 36 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 37 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 299.73 15.07 4.52 4.52 Total: -1.00 -31.00 299.73 -6.75 -37.75 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.68 Total: 2.66 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: -2.06 Total: -30.85 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.77 Total: -26.48 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.20 Total: -5.90 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.10 Total: 18.29 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.00 -6.75 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.008 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds