Wall clock time and date at job start Mon Mar 30 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38161 * 120.03054 * 2 1 4 4 C 1.38246 * 120.05847 * 180.25584 * 3 2 1 5 5 C 1.38283 * 120.10734 * 359.77000 * 4 3 2 6 6 C 1.38122 * 120.05726 * 359.97438 * 5 4 3 7 7 C 1.38711 * 120.02637 * 179.77596 * 2 1 3 8 8 O 1.35900 * 120.05461 * 359.97438 * 7 2 1 9 9 C 1.42901 * 116.99728 * 174.39097 * 8 7 2 10 10 H 1.09000 * 110.43803 * 322.52519 * 9 8 7 11 11 C 1.54895 * 110.48642 * 85.06574 * 9 8 7 12 12 C 1.54887 * 102.74855 * 156.61732 * 11 9 8 13 13 C 1.54264 * 104.19723 * 322.06094 * 12 11 9 14 14 H 1.09001 * 110.03205 * 264.27511 * 13 12 11 15 15 C 1.50699 * 110.03366 * 142.89463 * 13 12 11 16 16 H 1.08002 * 120.00244 * 242.09314 * 15 13 12 17 17 C 1.37880 * 119.99983 * 62.08835 * 15 13 12 18 18 N 1.31516 * 120.00194 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99921 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47189 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47149 * 60.00580 * 19 17 15 22 22 H 1.48493 * 109.47148 * 300.00241 * 19 17 15 23 23 C 1.53866 * 106.64204 * 23.58576 * 13 12 11 24 24 H 1.09004 * 109.46987 * 270.23083 * 1 2 3 25 25 H 1.09005 * 109.47141 * 30.22912 * 1 2 3 26 26 H 1.08998 * 109.47321 * 150.22781 * 1 2 3 27 27 H 1.08004 * 119.97094 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.94755 * 179.75090 * 4 3 2 29 29 H 1.08001 * 119.96924 * 179.97438 * 5 4 3 30 30 H 1.08006 * 120.02542 * 180.02562 * 6 5 4 31 31 H 1.09004 * 110.75032 * 38.30766 * 11 9 8 32 32 H 1.08996 * 110.75836 * 274.93590 * 11 9 8 33 33 H 1.08997 * 110.48687 * 203.37883 * 12 11 9 34 34 H 1.09005 * 110.59781 * 80.79608 * 12 11 9 35 35 H 0.96999 * 119.99434 * 0.02562 * 18 17 15 36 36 H 1.09000 * 110.03875 * 119.31335 * 23 13 12 37 37 H 1.09009 * 110.03507 * 240.74268 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1968 -0.0053 5 6 4.2752 0.0009 -0.0059 6 6 3.5886 -1.1976 -0.0006 7 6 2.2011 -1.2009 0.0047 8 8 1.5233 -2.3788 0.0098 9 6 2.2980 -3.5736 -0.1100 10 1 3.1291 -3.4209 -0.7985 11 6 2.8192 -4.0232 1.2776 12 6 3.0675 -5.5385 1.0750 13 6 1.9019 -5.9956 0.1738 14 1 1.0962 -6.4040 0.7839 15 6 2.3837 -7.0339 -0.8064 16 1 2.3378 -6.8374 -1.8674 17 6 2.8832 -8.2348 -0.3488 18 7 2.9388 -8.4744 0.9432 19 14 3.4811 -9.5215 -1.5638 20 1 3.9660 -10.7140 -0.8235 21 1 4.5894 -8.9582 -2.3760 22 1 2.3629 -9.9155 -2.4579 23 6 1.4115 -4.7469 -0.5797 24 1 -0.3633 0.0041 1.0277 25 1 -0.3634 0.8880 -0.5174 26 1 -0.3634 -0.8920 -0.5103 27 1 1.6585 2.1315 0.0004 28 1 4.1196 2.1329 -0.0094 29 1 5.3552 0.0040 -0.0105 30 1 4.1314 -2.1314 -0.0006 31 1 2.0652 -3.8547 2.0465 32 1 3.7478 -3.5095 1.5265 33 1 3.0381 -6.0611 2.0311 34 1 4.0228 -5.7076 0.5781 35 1 2.6280 -7.8063 1.5740 36 1 1.5219 -4.8918 -1.6543 37 1 0.3680 -4.5486 -0.3346 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260315052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:52 Heat of formation + Delta-G solvation = -38.387366 kcal Electronic energy + Delta-G solvation = -17630.008967 eV Core-core repulsion = 14950.371746 eV Total energy + Delta-G solvation = -2679.637221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.18338 -37.96339 -36.00350 -32.85746 -32.24521 -29.93467 -28.27238 -27.22653 -26.52770 -23.92401 -22.42588 -21.38544 -20.00334 -19.24188 -17.93478 -16.87838 -15.86215 -15.58536 -14.98280 -14.68342 -13.98487 -13.80100 -13.74390 -13.16575 -13.04479 -12.74277 -12.38106 -12.22487 -11.94056 -11.66087 -11.32272 -11.10447 -10.98468 -10.69945 -10.53180 -10.19653 -10.12322 -9.95099 -9.82979 -9.59837 -8.76529 -8.46555 -8.35322 -7.93391 -6.34019 -4.07367 1.37365 1.54205 3.42955 3.44048 3.54633 3.63001 3.82692 4.52136 4.85340 4.89324 5.10609 5.19059 5.28664 5.29568 5.37077 5.47059 5.58503 5.64863 5.70624 5.75246 5.90190 6.05139 6.22795 6.29319 6.33581 6.35011 6.46886 6.51302 6.55075 6.58460 6.71937 6.87111 6.92164 7.04308 7.31333 7.59262 7.76024 8.21805 8.41848 8.87773 9.64530 11.03338 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041444 B = 0.004862 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.455393 B = 5758.092915 C = 5958.163972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.128 4.128 3 C -0.087 4.087 4 C -0.166 4.166 5 C -0.087 4.087 6 C -0.207 4.207 7 C 0.141 3.859 8 O -0.307 6.307 9 C 0.080 3.920 10 H 0.073 0.927 11 C -0.147 4.147 12 C -0.109 4.109 13 C 0.032 3.968 14 H 0.023 0.977 15 C -0.596 4.596 16 H 0.050 0.950 17 C 0.020 3.980 18 N -0.913 5.913 19 Si 1.066 2.934 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.288 1.288 23 C -0.099 4.099 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.272 0.728 36 H 0.066 0.934 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.243 16.696 -1.171 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.128 4.128 3 C -0.105 4.105 4 C -0.184 4.184 5 C -0.105 4.105 6 C -0.225 4.225 7 C 0.095 3.905 8 O -0.220 6.220 9 C 0.025 3.975 10 H 0.091 0.909 11 C -0.185 4.185 12 C -0.148 4.148 13 C 0.014 3.986 14 H 0.041 0.959 15 C -0.634 4.634 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.549 5.549 19 Si 0.894 3.106 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.137 4.137 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.149 0.851 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.195 15.103 -1.266 15.157 hybrid contribution -0.278 1.518 0.121 1.548 sum -0.083 16.621 -1.145 16.660 Atomic orbital electron populations 1.20582 0.90732 1.02573 1.02094 1.19291 0.96476 0.90530 1.06538 1.20814 0.94105 0.96568 0.99031 1.20951 0.94203 0.97833 1.05399 1.20920 0.99617 0.91949 0.98012 1.21432 0.93426 0.99631 1.08038 1.18941 0.90477 0.86325 0.94787 1.86134 1.36781 1.12391 1.86736 1.23629 0.94387 0.81946 0.97549 0.90943 1.23096 0.99954 0.99150 0.96280 1.22541 1.01208 0.90945 1.00090 1.19367 0.93356 0.91723 0.94173 0.95892 1.22089 1.46076 1.02016 0.93251 0.93220 1.25779 0.94874 0.98662 0.99171 1.70801 1.44184 1.38240 1.01666 0.83585 0.76379 0.75992 0.74617 1.20811 1.21509 1.21476 1.22273 0.97840 0.92705 1.00856 0.91638 0.92062 0.91038 0.85866 0.86338 0.86145 0.85056 0.91448 0.92606 0.92668 0.91917 0.91582 0.91523 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.79 36.01 0.35 -0.89 16 2 C -0.13 -1.79 5.89 -104.47 -0.62 -2.41 16 3 C -0.09 -1.04 9.70 -39.61 -0.38 -1.43 16 4 C -0.17 -1.92 10.04 -39.56 -0.40 -2.32 16 5 C -0.09 -1.10 10.04 -39.61 -0.40 -1.50 16 6 C -0.21 -3.09 8.67 -39.44 -0.34 -3.44 16 7 C 0.14 2.27 6.60 -39.22 -0.26 2.01 16 8 O -0.31 -5.49 8.91 -19.43 -0.17 -5.66 16 9 C 0.08 1.51 2.71 -25.01 -0.07 1.44 16 10 H 0.07 1.33 6.53 -51.93 -0.34 0.99 16 11 C -0.15 -2.77 6.21 -24.74 -0.15 -2.93 16 12 C -0.11 -2.47 5.27 -25.07 -0.13 -2.60 16 13 C 0.03 0.79 2.50 -90.66 -0.23 0.57 16 14 H 0.02 0.61 7.99 -51.93 -0.42 0.19 16 15 C -0.60 -16.35 8.37 -34.44 -0.29 -16.63 16 16 H 0.05 1.35 7.33 -52.49 -0.38 0.97 16 17 C 0.02 0.55 5.32 -17.82 -0.09 0.45 16 18 N -0.91 -26.93 13.41 55.43 0.74 -26.18 16 19 Si 1.07 24.80 29.90 -169.99 -5.08 19.71 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.10 -2.09 6.21 -25.56 -0.16 -2.25 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.07 0.95 7.53 -51.93 -0.39 0.55 16 27 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.13 1.98 5.27 -52.48 -0.28 1.70 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 0.95 7.20 -51.93 -0.37 0.58 16 33 H 0.05 1.28 6.86 -51.93 -0.36 0.92 16 34 H 0.06 1.50 7.85 -51.93 -0.41 1.09 16 35 H 0.27 7.92 5.45 -40.82 -0.22 7.69 16 36 H 0.07 1.42 7.37 -51.93 -0.38 1.04 16 37 H 0.06 1.15 8.07 -51.92 -0.42 0.73 16 LS Contribution 296.86 15.07 4.47 4.47 Total: -1.00 -29.38 296.86 -8.50 -37.88 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.30 Total: 1.70 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: -3.17 Total: -31.93 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.17 Total: -5.66 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.38 -8.50 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.503 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds