Wall clock time and date at job start Mon Mar 30 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38161 * 120.03054 * 2 1 4 4 C 1.38246 * 120.05847 * 180.25584 * 3 2 1 5 5 C 1.38283 * 120.10734 * 359.77000 * 4 3 2 6 6 C 1.38122 * 120.05726 * 359.97438 * 5 4 3 7 7 C 1.38711 * 120.02637 * 179.77596 * 2 1 3 8 8 O 1.35900 * 120.05461 * 359.97438 * 7 2 1 9 9 C 1.42901 * 116.99728 * 174.39097 * 8 7 2 10 10 H 1.09000 * 110.43803 * 322.52519 * 9 8 7 11 11 C 1.54895 * 110.48642 * 85.06574 * 9 8 7 12 12 C 1.54887 * 102.74855 * 156.61732 * 11 9 8 13 13 C 1.54264 * 104.19723 * 322.06094 * 12 11 9 14 14 H 1.09001 * 110.03205 * 264.27511 * 13 12 11 15 15 C 1.50699 * 110.03366 * 142.89463 * 13 12 11 16 16 H 1.08002 * 120.00244 * 242.09314 * 15 13 12 17 17 C 1.37880 * 119.99983 * 62.08835 * 15 13 12 18 18 N 1.31516 * 120.00194 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99921 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47189 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47149 * 60.00580 * 19 17 15 22 22 H 1.48493 * 109.47148 * 300.00241 * 19 17 15 23 23 C 1.53866 * 106.64204 * 23.58576 * 13 12 11 24 24 H 1.09004 * 109.46987 * 270.23083 * 1 2 3 25 25 H 1.09005 * 109.47141 * 30.22912 * 1 2 3 26 26 H 1.08998 * 109.47321 * 150.22781 * 1 2 3 27 27 H 1.08004 * 119.97094 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.94755 * 179.75090 * 4 3 2 29 29 H 1.08001 * 119.96924 * 179.97438 * 5 4 3 30 30 H 1.08006 * 120.02542 * 180.02562 * 6 5 4 31 31 H 1.09004 * 110.75032 * 38.30766 * 11 9 8 32 32 H 1.08996 * 110.75836 * 274.93590 * 11 9 8 33 33 H 1.08997 * 110.48687 * 203.37883 * 12 11 9 34 34 H 1.09005 * 110.59781 * 80.79608 * 12 11 9 35 35 H 0.96999 * 119.99434 * 0.02562 * 18 17 15 36 36 H 1.09000 * 110.03875 * 119.31335 * 23 13 12 37 37 H 1.09009 * 110.03507 * 240.74268 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1968 -0.0053 5 6 4.2752 0.0009 -0.0059 6 6 3.5886 -1.1976 -0.0006 7 6 2.2011 -1.2009 0.0047 8 8 1.5233 -2.3788 0.0098 9 6 2.2980 -3.5736 -0.1100 10 1 3.1291 -3.4209 -0.7985 11 6 2.8192 -4.0232 1.2776 12 6 3.0675 -5.5385 1.0750 13 6 1.9019 -5.9956 0.1738 14 1 1.0962 -6.4040 0.7839 15 6 2.3837 -7.0339 -0.8064 16 1 2.3378 -6.8374 -1.8674 17 6 2.8832 -8.2348 -0.3488 18 7 2.9388 -8.4744 0.9432 19 14 3.4811 -9.5215 -1.5638 20 1 3.9660 -10.7140 -0.8235 21 1 4.5894 -8.9582 -2.3760 22 1 2.3629 -9.9155 -2.4579 23 6 1.4115 -4.7469 -0.5797 24 1 -0.3633 0.0041 1.0277 25 1 -0.3634 0.8880 -0.5174 26 1 -0.3634 -0.8920 -0.5103 27 1 1.6585 2.1315 0.0004 28 1 4.1196 2.1329 -0.0094 29 1 5.3552 0.0040 -0.0105 30 1 4.1314 -2.1314 -0.0006 31 1 2.0652 -3.8547 2.0465 32 1 3.7478 -3.5095 1.5265 33 1 3.0381 -6.0611 2.0311 34 1 4.0228 -5.7076 0.5781 35 1 2.6280 -7.8063 1.5740 36 1 1.5219 -4.8918 -1.6543 37 1 0.3680 -4.5486 -0.3346 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260315052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:52 Heat of formation + Delta-G solvation = -52.873308 kcal Electronic energy + Delta-G solvation = -17630.637125 eV Core-core repulsion = 14950.371746 eV Total energy + Delta-G solvation = -2680.265378 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.40204 -39.33746 -37.54219 -34.50229 -33.59707 -31.01872 -30.06369 -28.83686 -27.58026 -25.93949 -23.64766 -22.43302 -21.56246 -21.01980 -19.22214 -18.88926 -17.10449 -16.61553 -16.36199 -16.12635 -15.64952 -15.36511 -15.14471 -14.45148 -14.26261 -14.02849 -13.93047 -13.65317 -13.15816 -12.97459 -12.75460 -12.71552 -12.39427 -12.22243 -12.00184 -11.94560 -11.70495 -11.66096 -11.47654 -11.44106 -10.54000 -10.46275 -9.75428 -9.04526 -8.57036 -6.31387 0.38218 0.50946 1.54007 1.61187 1.80396 2.23566 2.58266 2.82217 3.20094 3.64285 3.66093 3.88022 3.92049 4.01185 4.20760 4.25597 4.42202 4.47263 4.57972 4.60418 4.64547 4.74546 4.80115 4.81118 4.86220 4.89504 4.98830 5.06095 5.19729 5.32376 5.41474 5.47190 5.55322 5.59684 5.60599 5.93809 6.08971 6.23081 6.50562 6.67346 7.48617 8.80830 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041444 B = 0.004862 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.455393 B = 5758.092915 C = 5958.163972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.139 4.139 3 C -0.086 4.086 4 C -0.157 4.157 5 C -0.093 4.093 6 C -0.222 4.222 7 C 0.104 3.896 8 O -0.318 6.318 9 C 0.095 3.905 10 H 0.076 0.924 11 C -0.132 4.132 12 C -0.100 4.100 13 C 0.023 3.977 14 H -0.005 1.005 15 C -0.609 4.609 16 H 0.047 0.953 17 C -0.029 4.029 18 N -0.938 5.938 19 Si 1.111 2.889 20 H -0.285 1.285 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.094 4.094 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.143 0.857 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.061 0.939 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 19.208 -1.905 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.140 4.140 3 C -0.103 4.103 4 C -0.175 4.175 5 C -0.111 4.111 6 C -0.241 4.241 7 C 0.059 3.941 8 O -0.232 6.232 9 C 0.039 3.961 10 H 0.094 0.906 11 C -0.170 4.170 12 C -0.138 4.138 13 C 0.004 3.996 14 H 0.014 0.986 15 C -0.647 4.647 16 H 0.065 0.935 17 C -0.228 4.228 18 N -0.576 5.576 19 Si 0.934 3.066 20 H -0.211 1.211 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.132 4.132 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.173 0.827 28 H 0.170 0.830 29 H 0.161 0.839 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.842 17.651 -2.003 17.784 hybrid contribution -0.501 0.877 0.357 1.072 sum 0.341 18.529 -1.645 18.605 Atomic orbital electron populations 1.20605 0.89824 1.02931 1.02504 1.19652 0.97478 0.90554 1.06322 1.21233 0.94581 0.96955 0.97559 1.21404 0.94336 0.98731 1.03058 1.21253 1.00921 0.91557 0.97354 1.21508 0.93157 1.00413 1.09009 1.19286 0.91270 0.86070 0.97464 1.86078 1.36834 1.12667 1.87647 1.23244 0.93704 0.82043 0.97094 0.90580 1.22960 1.01074 0.96251 0.96706 1.22291 0.99373 0.93612 0.98561 1.19373 0.93244 0.92802 0.94151 0.98638 1.22455 1.45635 1.02943 0.93672 0.93468 1.27165 0.94700 1.00996 0.99911 1.70905 1.45882 1.38328 1.02449 0.82998 0.76922 0.73675 0.73046 1.21083 1.19623 1.19844 1.22097 0.98558 0.92494 1.00054 0.91190 0.89469 0.92893 0.82653 0.83026 0.83919 0.85913 0.91227 0.90480 0.94113 0.93616 0.92629 0.91984 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.29 9.79 71.24 0.70 -1.59 16 2 C -0.14 -3.63 5.89 -19.77 -0.12 -3.75 16 3 C -0.09 -1.73 9.70 22.25 0.22 -1.51 16 4 C -0.16 -3.03 10.04 22.28 0.22 -2.80 16 5 C -0.09 -2.10 10.04 22.25 0.22 -1.88 16 6 C -0.22 -6.37 8.67 22.36 0.19 -6.17 16 7 C 0.10 3.25 6.60 22.50 0.15 3.40 16 8 O -0.32 -11.34 8.91 -92.43 -0.82 -12.16 16 9 C 0.10 3.58 2.71 31.71 0.09 3.66 16 10 H 0.08 2.79 6.53 -2.39 -0.02 2.78 16 11 C -0.13 -5.00 6.21 31.89 0.20 -4.80 16 12 C -0.10 -4.65 5.27 31.67 0.17 -4.48 16 13 C 0.02 1.16 2.50 -10.82 -0.03 1.14 16 14 H 0.00 -0.25 7.99 -2.39 -0.02 -0.27 16 15 C -0.61 -34.15 8.37 25.60 0.21 -33.93 16 16 H 0.05 2.61 7.33 -2.91 -0.02 2.58 16 17 C -0.03 -1.66 5.32 84.66 0.45 -1.20 16 18 N -0.94 -56.80 13.41 21.45 0.29 -56.51 16 19 Si 1.11 50.01 29.90 68.60 2.05 52.06 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 C -0.09 -4.07 6.21 31.35 0.19 -3.87 16 24 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.09 1.45 8.09 -2.38 -0.02 1.44 16 26 H 0.05 1.37 7.53 -2.39 -0.02 1.35 16 27 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 28 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 29 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.12 3.62 5.27 -2.91 -0.02 3.60 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.08 2.58 7.20 -2.39 -0.02 2.57 16 33 H 0.04 1.97 6.86 -2.39 -0.02 1.95 16 34 H 0.04 2.24 7.85 -2.38 -0.02 2.22 16 35 H 0.26 15.92 5.45 -92.71 -0.51 15.41 16 36 H 0.06 2.69 7.37 -2.39 -0.02 2.67 16 37 H 0.06 2.53 8.07 -2.38 -0.02 2.51 16 Total: -1.00 -64.41 296.86 5.69 -58.72 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.31 Total: 15.68 kcal Atomic # 6 Polarization: -60.66 SS G_CDS: 2.87 Total: -57.79 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.29 Total: -56.51 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.82 Total: -12.16 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.06 kcal Total: -64.41 5.69 -58.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.847 kcal (2) G-P(sol) polarization free energy of solvation -64.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds