Wall clock time and date at job start Mon Mar 30 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38170 * 119.97096 * 2 1 4 4 C 1.38706 * 119.94091 * 179.97438 * 3 2 1 5 5 O 1.35905 * 120.05250 * 179.97438 * 4 3 2 6 6 C 1.38749 * 119.89147 * 0.02562 * 4 3 2 7 7 C 1.50702 * 120.02648 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47200 * 359.97438 * 7 6 4 9 9 C 1.50707 * 109.46617 * 239.99574 * 7 6 4 10 10 H 1.07999 * 120.00171 * 265.25676 * 9 7 6 11 11 C 1.37874 * 120.00126 * 85.25973 * 9 7 6 12 12 N 1.31516 * 119.99933 * 5.10726 * 11 9 7 13 13 Si 1.86801 * 120.00178 * 185.10947 * 11 9 7 14 14 H 1.48508 * 109.46961 * 89.99952 * 13 11 9 15 15 H 1.48497 * 109.47225 * 209.99342 * 13 11 9 16 16 H 1.48495 * 109.46916 * 329.99914 * 13 11 9 17 17 C 1.52996 * 109.47606 * 119.99966 * 7 6 4 18 18 C 1.53004 * 117.49795 * 254.12719 * 17 7 6 19 19 C 1.52996 * 117.50158 * 185.46584 * 17 7 6 20 20 C 1.38119 * 119.94662 * 359.97438 * 6 4 3 21 21 C 1.38243 * 119.97062 * 179.72796 * 2 1 3 22 22 C 1.50697 * 119.94865 * 359.97438 * 21 2 1 23 23 H 1.08995 * 109.46757 * 90.00103 * 1 2 3 24 24 H 1.09000 * 109.46727 * 329.99857 * 1 2 3 25 25 H 1.08995 * 109.46579 * 209.99672 * 1 2 3 26 26 H 1.08000 * 120.02589 * 359.97438 * 3 2 1 27 27 H 0.96695 * 114.00081 * 90.00219 * 5 4 3 28 28 H 0.97003 * 120.00321 * 179.97438 * 12 11 9 29 29 H 1.09003 * 115.54816 * 39.78894 * 17 7 6 30 30 H 1.09002 * 117.49698 * 0.02562 * 18 17 7 31 31 H 1.08998 * 117.49512 * 145.01405 * 18 17 7 32 32 H 1.08996 * 117.50102 * 214.97191 * 19 17 7 33 33 H 1.08998 * 117.49727 * 359.97438 * 19 17 7 34 34 H 1.07997 * 119.97497 * 179.97438 * 20 6 4 35 35 H 1.09003 * 109.47183 * 89.99816 * 22 21 2 36 36 H 1.08997 * 109.47424 * 210.00355 * 22 21 2 37 37 H 1.09008 * 109.46894 * 330.00245 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1962 0.0005 5 8 4.2656 2.3722 0.0000 6 6 4.2752 -0.0071 0.0005 7 6 5.7822 -0.0114 0.0017 8 1 6.1485 1.0152 0.0020 9 6 6.2834 -0.7229 -1.2287 10 1 6.5332 -1.7725 -1.1815 11 6 6.4230 -0.0337 -2.4147 12 7 6.2156 1.2645 -2.4492 13 14 6.9066 -0.9440 -3.9726 14 1 5.6831 -1.4088 -4.6744 15 1 7.6709 -0.0325 -4.8615 16 1 7.7500 -2.1144 -3.6204 17 6 6.2893 -0.7346 1.2509 18 6 6.8764 0.1226 2.3741 19 6 7.7983 -0.7350 1.5035 20 6 3.5806 -1.2009 0.0005 21 6 2.1977 -1.1976 0.0057 22 6 1.4424 -2.5016 0.0125 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 0.8900 0.5139 25 1 -0.3632 -0.8900 0.5138 26 1 1.6573 2.1322 -0.0004 27 1 4.4624 2.7131 0.8832 28 1 6.3142 1.7495 -3.2835 29 1 5.7308 -1.6258 1.5375 30 1 6.9010 1.2018 2.2231 31 1 6.7045 -0.2049 3.3994 32 1 8.2325 -1.6261 1.9566 33 1 8.4298 -0.2203 0.7794 34 1 4.1179 -2.1377 0.0001 35 1 1.2598 -2.8211 -1.0136 36 1 2.0305 -3.2595 0.5299 37 1 0.4902 -2.3673 0.5260 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260323544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:25 Heat of formation + Delta-G solvation = -11.243695 kcal Electronic energy + Delta-G solvation = -18123.113612 eV Core-core repulsion = 15444.653429 eV Total energy + Delta-G solvation = -2678.460183 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.27032 -36.68925 -36.16992 -33.15471 -31.76996 -31.02755 -28.59747 -26.13898 -25.04916 -23.13209 -21.66070 -21.46077 -19.94206 -18.81448 -16.94032 -16.35308 -15.29536 -14.97415 -14.64066 -14.22517 -13.77493 -13.64855 -13.15164 -12.78487 -12.55808 -12.43201 -12.23401 -11.84921 -11.45314 -11.26607 -10.99060 -10.85470 -10.75996 -10.71564 -10.44405 -10.39314 -9.90127 -9.62266 -9.29155 -9.16028 -8.65940 -8.36021 -7.77495 -7.27191 -5.92862 -3.98685 2.14945 2.28304 3.33691 3.40616 3.42389 4.42625 4.52840 4.78132 5.13865 5.35307 5.39321 5.51761 5.60492 5.62664 5.78910 5.85069 5.87802 5.92248 5.98334 6.07195 6.18116 6.27672 6.28467 6.42636 6.48514 6.59686 6.77465 6.81686 6.96336 7.01089 7.13379 7.22270 7.44480 7.58482 7.80721 7.89128 8.03521 8.40849 8.69431 9.05926 9.63012 11.11896 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.009438 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.097977 B = 2965.983207 C = 3479.392320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C -0.152 4.152 4 C 0.102 3.898 5 O -0.475 6.475 6 C -0.038 4.038 7 C 0.096 3.904 8 H 0.071 0.929 9 C -0.507 4.507 10 H 0.056 0.944 11 C 0.068 3.932 12 N -0.865 5.865 13 Si 0.883 3.117 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.119 4.119 18 C -0.202 4.202 19 C -0.171 4.171 20 C -0.099 4.099 21 C -0.109 4.109 22 C -0.108 4.108 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.367 0.633 28 H 0.259 0.741 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 -2.399 7.411 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C -0.170 4.170 4 C 0.057 3.943 5 O -0.281 6.281 6 C -0.039 4.039 7 C 0.078 3.922 8 H 0.090 0.910 9 C -0.545 4.545 10 H 0.074 0.926 11 C -0.136 4.136 12 N -0.500 5.500 13 Si 0.711 3.289 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.137 4.137 18 C -0.239 4.239 19 C -0.208 4.208 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.164 4.164 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.129 0.871 27 H 0.219 0.781 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.862 -2.285 6.658 9.830 hybrid contribution 0.279 -0.341 -0.630 0.769 sum -6.583 -2.626 6.027 9.304 Atomic orbital electron populations 1.20715 0.92379 1.01687 1.01436 1.19247 0.94863 0.92414 1.04472 1.21085 0.93807 0.97203 1.04935 1.18295 0.88849 0.85782 1.01334 1.85033 1.76368 1.35805 1.30915 1.20969 0.99245 0.90993 0.92712 1.17562 0.85851 0.98500 0.90290 0.91046 1.20829 1.44049 0.96057 0.93528 0.92613 1.25006 0.95068 0.94757 0.98813 1.70009 1.47515 1.06191 1.26330 0.86737 0.78504 0.79825 0.83831 1.20762 1.21338 1.19884 1.22508 0.94816 0.99629 0.96755 1.22988 1.07599 0.98028 0.95281 1.22716 0.94595 1.01004 1.02506 1.20701 0.92153 0.98198 1.00713 1.19609 0.93991 0.94075 1.03202 1.20744 0.99399 0.94756 1.01541 0.92136 0.92543 0.91862 0.87114 0.78061 0.93075 0.89929 0.89568 0.90606 0.90603 0.88657 0.86575 0.91994 0.92255 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.61 36.01 0.35 -1.10 16 2 C -0.11 -1.97 5.88 -104.64 -0.62 -2.59 16 3 C -0.15 -2.96 9.64 -39.43 -0.38 -3.34 16 4 C 0.10 2.25 6.68 -39.22 -0.26 1.98 16 5 O -0.47 -10.29 12.27 -19.44 -0.24 -10.53 16 6 C -0.04 -0.87 4.78 -104.48 -0.50 -1.37 16 7 C 0.10 2.32 2.03 -92.92 -0.19 2.13 16 8 H 0.07 1.91 6.19 -51.93 -0.32 1.59 16 9 C -0.51 -13.60 7.72 -34.44 -0.27 -13.86 16 10 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 11 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 12 N -0.86 -25.16 12.92 55.43 0.72 -24.44 16 13 Si 0.88 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.12 -2.44 4.92 -90.62 -0.45 -2.88 16 18 C -0.20 -3.59 10.18 -26.69 -0.27 -3.86 16 19 C -0.17 -3.25 10.02 -26.69 -0.27 -3.52 16 20 C -0.10 -2.09 8.32 -39.60 -0.33 -2.42 16 21 C -0.11 -2.01 5.88 -104.60 -0.62 -2.62 16 22 C -0.11 -1.56 9.60 36.00 0.35 -1.21 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 25 H 0.06 0.76 5.93 -51.93 -0.31 0.45 16 26 H 0.11 1.94 8.06 -52.49 -0.42 1.51 16 27 H 0.37 6.02 9.06 45.56 0.41 6.43 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.08 1.63 7.42 -51.93 -0.39 1.25 16 30 H 0.09 1.53 8.08 -51.93 -0.42 1.11 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 34 H 0.12 2.38 7.80 -52.49 -0.41 1.97 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.06 0.75 5.94 -51.92 -0.31 0.44 16 LS Contribution 308.24 15.07 4.65 4.65 Total: -1.00 -30.36 308.24 -8.11 -38.47 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.66 Total: 8.15 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: -3.55 Total: -32.87 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.72 Total: -24.44 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.24 Total: -10.53 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.36 -8.11 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.227 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds