Wall clock time and date at job start Mon Mar 30 2020 05:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38170 * 119.97096 * 2 1 4 4 C 1.38706 * 119.94091 * 179.97438 * 3 2 1 5 5 O 1.35905 * 120.05250 * 179.97438 * 4 3 2 6 6 C 1.38749 * 119.89147 * 0.02562 * 4 3 2 7 7 C 1.50702 * 120.02648 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47200 * 359.97438 * 7 6 4 9 9 C 1.50707 * 109.46617 * 239.99574 * 7 6 4 10 10 H 1.07999 * 120.00171 * 265.25676 * 9 7 6 11 11 C 1.37874 * 120.00126 * 85.25973 * 9 7 6 12 12 N 1.31516 * 119.99933 * 5.10726 * 11 9 7 13 13 Si 1.86801 * 120.00178 * 185.10947 * 11 9 7 14 14 H 1.48508 * 109.46961 * 89.99952 * 13 11 9 15 15 H 1.48497 * 109.47225 * 209.99342 * 13 11 9 16 16 H 1.48495 * 109.46916 * 329.99914 * 13 11 9 17 17 C 1.52996 * 109.47606 * 119.99966 * 7 6 4 18 18 C 1.53004 * 117.49795 * 254.12719 * 17 7 6 19 19 C 1.52996 * 117.50158 * 185.46584 * 17 7 6 20 20 C 1.38119 * 119.94662 * 359.97438 * 6 4 3 21 21 C 1.38243 * 119.97062 * 179.72796 * 2 1 3 22 22 C 1.50697 * 119.94865 * 359.97438 * 21 2 1 23 23 H 1.08995 * 109.46757 * 90.00103 * 1 2 3 24 24 H 1.09000 * 109.46727 * 329.99857 * 1 2 3 25 25 H 1.08995 * 109.46579 * 209.99672 * 1 2 3 26 26 H 1.08000 * 120.02589 * 359.97438 * 3 2 1 27 27 H 0.96695 * 114.00081 * 90.00219 * 5 4 3 28 28 H 0.97003 * 120.00321 * 179.97438 * 12 11 9 29 29 H 1.09003 * 115.54816 * 39.78894 * 17 7 6 30 30 H 1.09002 * 117.49698 * 0.02562 * 18 17 7 31 31 H 1.08998 * 117.49512 * 145.01405 * 18 17 7 32 32 H 1.08996 * 117.50102 * 214.97191 * 19 17 7 33 33 H 1.08998 * 117.49727 * 359.97438 * 19 17 7 34 34 H 1.07997 * 119.97497 * 179.97438 * 20 6 4 35 35 H 1.09003 * 109.47183 * 89.99816 * 22 21 2 36 36 H 1.08997 * 109.47424 * 210.00355 * 22 21 2 37 37 H 1.09008 * 109.46894 * 330.00245 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1962 0.0005 5 8 4.2656 2.3722 0.0000 6 6 4.2752 -0.0071 0.0005 7 6 5.7822 -0.0114 0.0017 8 1 6.1485 1.0152 0.0020 9 6 6.2834 -0.7229 -1.2287 10 1 6.5332 -1.7725 -1.1815 11 6 6.4230 -0.0337 -2.4147 12 7 6.2156 1.2645 -2.4492 13 14 6.9066 -0.9440 -3.9726 14 1 5.6831 -1.4088 -4.6744 15 1 7.6709 -0.0325 -4.8615 16 1 7.7500 -2.1144 -3.6204 17 6 6.2893 -0.7346 1.2509 18 6 6.8764 0.1226 2.3741 19 6 7.7983 -0.7350 1.5035 20 6 3.5806 -1.2009 0.0005 21 6 2.1977 -1.1976 0.0057 22 6 1.4424 -2.5016 0.0125 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 0.8900 0.5139 25 1 -0.3632 -0.8900 0.5138 26 1 1.6573 2.1322 -0.0004 27 1 4.4624 2.7131 0.8832 28 1 6.3142 1.7495 -3.2835 29 1 5.7308 -1.6258 1.5375 30 1 6.9010 1.2018 2.2231 31 1 6.7045 -0.2049 3.3994 32 1 8.2325 -1.6261 1.9566 33 1 8.4298 -0.2203 0.7794 34 1 4.1179 -2.1377 0.0001 35 1 1.2598 -2.8211 -1.0136 36 1 2.0305 -3.2595 0.5299 37 1 0.4902 -2.3673 0.5260 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260323544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:24 Heat of formation + Delta-G solvation = -28.557762 kcal Electronic energy + Delta-G solvation = -18123.864406 eV Core-core repulsion = 15444.653429 eV Total energy + Delta-G solvation = -2679.210977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81919 -38.25737 -37.74553 -34.98258 -33.48532 -32.41325 -30.21524 -27.60178 -26.66067 -24.88088 -23.15905 -22.96066 -21.48667 -20.50440 -18.51531 -18.34400 -16.83346 -16.62380 -16.45151 -15.82983 -15.25546 -14.91248 -14.80556 -14.27307 -14.12409 -13.80837 -13.50005 -13.39518 -13.17202 -12.89090 -12.58281 -12.51060 -12.24548 -12.21784 -12.18414 -11.89962 -11.60889 -11.21580 -11.02285 -10.93855 -10.40776 -10.34598 -9.32445 -8.82894 -8.01793 -6.12830 0.61363 0.74748 1.37197 1.38666 1.47254 2.42828 2.96710 3.20554 3.29092 3.65727 4.05288 4.12414 4.18721 4.31220 4.36330 4.44638 4.52112 4.67477 4.80381 4.84640 4.90041 4.91425 4.97469 5.07301 5.13826 5.17333 5.22125 5.33206 5.44509 5.48069 5.53913 5.67748 5.76160 5.88289 5.98343 6.15134 6.30835 6.44673 6.97967 7.20111 7.50756 9.00861 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.009438 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.097977 B = 2965.983207 C = 3479.392320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.107 4.107 3 C -0.160 4.160 4 C 0.078 3.922 5 O -0.496 6.496 6 C -0.068 4.068 7 C 0.102 3.898 8 H 0.035 0.965 9 C -0.509 4.509 10 H 0.049 0.951 11 C 0.017 3.983 12 N -0.898 5.898 13 Si 0.938 3.062 14 H -0.283 1.283 15 H -0.287 1.287 16 H -0.265 1.265 17 C -0.139 4.139 18 C -0.178 4.178 19 C -0.172 4.172 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.105 4.105 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.128 0.872 27 H 0.384 0.616 28 H 0.254 0.746 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.691 -3.801 8.360 12.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.107 4.107 3 C -0.178 4.178 4 C 0.034 3.966 5 O -0.305 6.305 6 C -0.069 4.069 7 C 0.083 3.917 8 H 0.053 0.947 9 C -0.548 4.548 10 H 0.068 0.932 11 C -0.184 4.184 12 N -0.536 5.536 13 Si 0.764 3.236 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.157 4.157 18 C -0.214 4.214 19 C -0.209 4.209 20 C -0.134 4.134 21 C -0.111 4.111 22 C -0.162 4.162 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.146 0.854 27 H 0.238 0.762 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.710 -3.701 7.624 12.152 hybrid contribution 0.805 0.095 -0.848 1.174 sum -7.904 -3.606 6.776 11.018 Atomic orbital electron populations 1.20794 0.88843 1.03709 1.02584 1.19796 0.97389 0.91484 1.02045 1.21355 0.92898 0.98889 1.04687 1.18577 0.90056 0.85456 1.02529 1.84966 1.76778 1.36036 1.32738 1.20907 0.98499 0.92295 0.95187 1.17311 0.87146 0.96335 0.90862 0.94673 1.21154 1.43062 0.95749 0.94786 0.93227 1.25684 0.95711 0.95411 1.01561 1.70162 1.49622 1.07420 1.26394 0.85870 0.78105 0.78957 0.80651 1.20885 1.21296 1.18902 1.22382 0.95821 1.00621 0.96918 1.23021 1.04996 0.97439 0.95994 1.22733 0.93466 1.02201 1.02542 1.20802 0.93638 0.97295 1.01641 1.20064 0.93221 0.96343 1.01477 1.20812 1.00237 0.92621 1.02493 0.91216 0.90953 0.89538 0.85398 0.76163 0.93729 0.89159 0.90150 0.87403 0.87961 0.91134 0.86982 0.91320 0.91387 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.41 9.61 71.24 0.68 -1.72 16 2 C -0.11 -3.59 5.88 -19.88 -0.12 -3.71 16 3 C -0.16 -6.09 9.64 22.37 0.22 -5.88 16 4 C 0.08 3.50 6.68 22.50 0.15 3.65 16 5 O -0.50 -22.36 12.27 -92.49 -1.13 -23.50 16 6 C -0.07 -3.17 4.78 -19.77 -0.09 -3.27 16 7 C 0.10 5.07 2.03 -12.28 -0.02 5.05 16 8 H 0.04 1.98 6.19 -2.39 -0.01 1.96 16 9 C -0.51 -28.11 7.72 25.60 0.20 -27.91 16 10 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 11 C 0.02 0.94 5.45 84.65 0.46 1.41 16 12 N -0.90 -54.28 12.92 21.45 0.28 -54.00 16 13 Si 0.94 45.29 29.54 68.60 2.03 47.32 16 14 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 16 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 17 C -0.14 -5.74 4.92 -10.79 -0.05 -5.79 16 18 C -0.18 -6.15 10.18 30.62 0.31 -5.84 16 19 C -0.17 -6.49 10.02 30.62 0.31 -6.19 16 20 C -0.12 -4.84 8.32 22.26 0.19 -4.66 16 21 C -0.11 -3.88 5.88 -19.85 -0.12 -4.00 16 22 C -0.11 -2.68 9.60 71.23 0.68 -2.00 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 25 H 0.09 1.63 5.93 -2.39 -0.01 1.62 16 26 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 27 H 0.38 13.24 9.06 -74.06 -0.67 12.57 16 28 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16 29 H 0.09 3.55 7.42 -2.39 -0.02 3.53 16 30 H 0.08 2.86 8.08 -2.39 -0.02 2.84 16 31 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.11 4.63 7.80 -2.91 -0.02 4.61 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 37 H 0.09 1.76 5.94 -2.38 -0.01 1.75 16 Total: -1.00 -67.30 308.24 4.35 -62.95 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.39 Total: 28.08 kcal Atomic # 6 Polarization: -63.64 SS G_CDS: 2.79 Total: -60.85 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.28 Total: -54.00 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -1.13 Total: -23.50 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.30 4.35 -62.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.392 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds