Wall clock time and date at job start Mon Mar 30 2020 05:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.35904 * 116.99628 * 179.97438 * 10 9 7 12 12 C 1.38758 * 120.05922 * 359.72826 * 11 10 9 13 13 C 1.38121 * 119.94303 * 179.69478 * 12 11 10 14 14 C 1.38284 * 120.05670 * 0.60266 * 13 12 11 15 15 C 1.38245 * 120.11162 * 359.67148 * 14 13 12 16 16 C 1.50704 * 119.97222 * 179.97438 * 15 14 13 17 17 C 1.54269 * 110.02552 * 57.93363 * 16 15 14 18 18 C 1.54965 * 104.15921 * 217.13193 * 17 16 15 19 19 C 1.54894 * 102.77327 * 37.88915 * 18 17 16 20 20 C 1.53872 * 110.03442 * 300.71803 * 16 15 14 21 21 C 1.38173 * 120.05607 * 0.02881 * 15 14 13 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.08003 * 120.02200 * 359.97438 * 12 11 10 26 26 H 1.07998 * 119.96674 * 180.29445 * 13 12 11 27 27 H 1.08003 * 119.94493 * 179.69558 * 14 13 12 28 28 H 1.08994 * 110.01631 * 179.32111 * 16 15 14 29 29 H 1.08995 * 110.49043 * 335.78146 * 17 16 15 30 30 H 1.09005 * 110.48326 * 98.43023 * 17 16 15 31 31 H 1.09000 * 110.72266 * 279.58158 * 18 17 16 32 32 H 1.08993 * 110.92890 * 156.29580 * 18 17 16 33 33 H 1.09000 * 110.48541 * 203.40194 * 19 18 17 34 34 H 1.09004 * 110.59580 * 80.81912 * 19 18 17 35 35 H 1.09004 * 110.03024 * 238.56677 * 20 16 15 36 36 H 1.09003 * 110.03067 * 359.94828 * 20 16 15 37 37 H 1.07997 * 120.02733 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.6600 -4.8412 0.0011 12 6 0.2846 -5.0243 0.0073 13 6 -0.2408 -6.3017 0.0015 14 6 0.6026 -7.3975 0.0020 15 6 1.9733 -7.2178 0.0016 16 6 2.8895 -8.4143 0.0027 17 6 2.5995 -9.3030 -1.2245 18 6 2.7753 -10.7489 -0.6955 19 6 2.1811 -10.6657 0.7325 20 6 2.6239 -9.2803 1.2466 21 6 2.5039 -5.9420 0.0011 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 -0.3745 -4.1687 0.0121 26 1 -1.3113 -6.4446 0.0015 27 1 0.1897 -8.3955 0.0024 28 1 3.9294 -8.0879 -0.0099 29 1 1.5797 -9.1469 -1.5761 30 1 3.3145 -9.0979 -2.0214 31 1 3.8302 -11.0208 -0.6596 32 1 2.2158 -11.4575 -1.3060 33 1 2.5906 -11.4553 1.3626 34 1 1.0935 -10.7307 0.6996 35 1 3.5353 -9.3750 1.8371 36 1 1.8330 -8.8347 1.8498 37 1 3.5748 -5.8021 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260325710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:14 Heat of formation + Delta-G solvation = -44.277875 kcal Electronic energy + Delta-G solvation = -17085.501307 eV Core-core repulsion = 14405.608655 eV Total energy + Delta-G solvation = -2679.892652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75241 -38.18464 -36.12808 -32.91737 -31.43346 -29.77901 -28.73196 -27.40176 -27.24084 -23.34799 -22.07325 -21.41868 -20.67956 -19.25685 -17.19298 -16.57734 -15.79453 -15.51390 -15.14380 -14.66405 -14.55770 -14.37155 -13.80604 -13.43444 -12.95824 -12.68496 -12.32793 -11.86980 -11.59513 -11.33004 -11.20010 -11.13588 -11.11515 -10.95759 -10.85913 -10.66402 -10.63332 -10.35466 -10.10351 -10.04514 -9.27719 -8.60135 -8.34455 -7.44211 -6.24344 -4.28137 1.77819 1.99734 3.26285 3.29031 3.32515 4.15573 4.19787 4.47512 4.54858 4.68247 4.75712 5.12688 5.21072 5.27813 5.38140 5.51755 5.52411 5.54628 5.58235 5.63539 5.78323 5.81605 5.84988 5.96443 5.99158 6.18199 6.20756 6.26497 6.31252 6.51824 6.78647 6.90386 7.01189 7.04933 7.16111 7.35413 7.68830 7.96700 8.50254 8.85011 9.37041 10.86909 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.055023 B = 0.003994 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.753811 B = 7009.290231 C = 7281.406694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.070 0.930 9 C 0.193 3.807 10 O -0.318 6.318 11 C 0.155 3.845 12 C -0.217 4.217 13 C -0.079 4.079 14 C -0.174 4.174 15 C -0.042 4.042 16 C -0.051 4.051 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.168 4.168 22 H 0.268 0.732 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.131 0.869 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 -18.760 -0.001 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.088 0.912 9 C 0.121 3.879 10 O -0.231 6.231 11 C 0.107 3.893 12 C -0.236 4.236 13 C -0.098 4.098 14 C -0.193 4.193 15 C -0.042 4.042 16 C -0.070 4.070 17 C -0.154 4.154 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.187 4.187 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.149 0.851 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.469 -18.534 0.004 18.698 hybrid contribution 0.001 1.072 0.013 1.072 sum 2.470 -17.462 0.018 17.636 Atomic orbital electron populations 1.69942 1.06141 1.27705 1.49518 1.24936 0.95050 0.99534 0.94666 0.86299 0.79278 0.81383 0.78998 1.19844 1.20982 1.19835 1.20951 0.94241 0.88806 1.52311 0.91203 1.20629 0.88660 0.81801 0.96833 1.86113 1.39098 1.11852 1.86049 1.19250 0.91646 0.86395 0.92046 1.21454 0.94816 0.98523 1.08766 1.20855 0.99140 0.92051 0.97721 1.20627 0.92754 0.98118 1.07759 1.19477 0.93732 0.92998 0.97970 1.20749 0.98308 0.92803 0.95100 1.22510 1.02254 0.93797 0.96876 1.22520 1.00724 0.96824 0.96231 1.22369 1.00573 0.96930 0.96293 1.22247 1.01535 0.94702 0.97014 1.20288 0.99351 0.90039 1.09019 0.92279 0.96110 0.96123 0.85104 0.86578 0.86855 0.90426 0.90965 0.91633 0.91671 0.91771 0.91973 0.91707 0.91838 0.91184 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -15.23 9.43 -34.44 -0.32 -15.56 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.26 4.49 36.01 0.16 5.42 16 10 O -0.32 -7.97 10.12 -19.44 -0.20 -8.16 16 11 C 0.15 3.28 6.69 -39.22 -0.26 3.02 16 12 C -0.22 -4.27 9.04 -39.43 -0.36 -4.62 16 13 C -0.08 -1.29 10.04 -39.61 -0.40 -1.69 16 14 C -0.17 -2.56 8.10 -39.56 -0.32 -2.88 16 15 C -0.04 -0.63 4.69 -104.64 -0.49 -1.12 16 16 C -0.05 -0.61 3.13 -90.65 -0.28 -0.89 16 17 C -0.12 -1.21 6.27 -25.03 -0.16 -1.37 16 18 C -0.13 -1.07 6.91 -24.70 -0.17 -1.25 16 19 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 20 C -0.12 -1.23 6.24 -25.62 -0.16 -1.39 16 21 C -0.17 -3.03 9.62 -39.43 -0.38 -3.41 16 22 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.02 0.59 7.65 -51.93 -0.40 0.19 16 24 H 0.02 0.58 7.68 -51.93 -0.40 0.19 16 25 H 0.13 2.71 6.30 -52.48 -0.33 2.38 16 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.11 1.40 7.77 -52.48 -0.41 0.99 16 28 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 29 H 0.07 0.79 6.91 -51.93 -0.36 0.43 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.80 7.28 -51.93 -0.38 0.42 16 37 H 0.12 2.07 7.96 -52.49 -0.42 1.66 16 LS Contribution 303.69 15.07 4.58 4.58 Total: -1.00 -29.68 303.69 -8.92 -38.60 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.60 Total: -0.63 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -3.41 Total: -25.38 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.74 Total: -25.43 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.20 Total: -8.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.68 -8.92 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.681 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds