Wall clock time and date at job start Mon Mar 30 2020 05:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.35904 * 116.99628 * 179.97438 * 10 9 7 12 12 C 1.38758 * 120.05922 * 359.72826 * 11 10 9 13 13 C 1.38121 * 119.94303 * 179.69478 * 12 11 10 14 14 C 1.38284 * 120.05670 * 0.60266 * 13 12 11 15 15 C 1.38245 * 120.11162 * 359.67148 * 14 13 12 16 16 C 1.50704 * 119.97222 * 179.97438 * 15 14 13 17 17 C 1.54269 * 110.02552 * 57.93363 * 16 15 14 18 18 C 1.54965 * 104.15921 * 217.13193 * 17 16 15 19 19 C 1.54894 * 102.77327 * 37.88915 * 18 17 16 20 20 C 1.53872 * 110.03442 * 300.71803 * 16 15 14 21 21 C 1.38173 * 120.05607 * 0.02881 * 15 14 13 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.08003 * 120.02200 * 359.97438 * 12 11 10 26 26 H 1.07998 * 119.96674 * 180.29445 * 13 12 11 27 27 H 1.08003 * 119.94493 * 179.69558 * 14 13 12 28 28 H 1.08994 * 110.01631 * 179.32111 * 16 15 14 29 29 H 1.08995 * 110.49043 * 335.78146 * 17 16 15 30 30 H 1.09005 * 110.48326 * 98.43023 * 17 16 15 31 31 H 1.09000 * 110.72266 * 279.58158 * 18 17 16 32 32 H 1.08993 * 110.92890 * 156.29580 * 18 17 16 33 33 H 1.09000 * 110.48541 * 203.40194 * 19 18 17 34 34 H 1.09004 * 110.59580 * 80.81912 * 19 18 17 35 35 H 1.09004 * 110.03024 * 238.56677 * 20 16 15 36 36 H 1.09003 * 110.03067 * 359.94828 * 20 16 15 37 37 H 1.07997 * 120.02733 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.6600 -4.8412 0.0011 12 6 0.2846 -5.0243 0.0073 13 6 -0.2408 -6.3017 0.0015 14 6 0.6026 -7.3975 0.0020 15 6 1.9733 -7.2178 0.0016 16 6 2.8895 -8.4143 0.0027 17 6 2.5995 -9.3030 -1.2245 18 6 2.7753 -10.7489 -0.6955 19 6 2.1811 -10.6657 0.7325 20 6 2.6239 -9.2803 1.2466 21 6 2.5039 -5.9420 0.0011 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 -0.3745 -4.1687 0.0121 26 1 -1.3113 -6.4446 0.0015 27 1 0.1897 -8.3955 0.0024 28 1 3.9294 -8.0879 -0.0099 29 1 1.5797 -9.1469 -1.5761 30 1 3.3145 -9.0979 -2.0214 31 1 3.8302 -11.0208 -0.6596 32 1 2.2158 -11.4575 -1.3060 33 1 2.5906 -11.4553 1.3626 34 1 1.0935 -10.7307 0.6996 35 1 3.5353 -9.3750 1.8371 36 1 1.8330 -8.8347 1.8498 37 1 3.5748 -5.8021 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260325710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:14 Heat of formation + Delta-G solvation = -59.543214 kcal Electronic energy + Delta-G solvation = -17086.163262 eV Core-core repulsion = 14405.608655 eV Total energy + Delta-G solvation = -2680.554607 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14161 -39.49871 -37.49763 -35.08324 -32.64389 -31.34373 -29.49792 -29.40865 -28.34523 -25.30761 -23.47423 -22.80253 -21.38736 -20.47362 -18.97691 -18.32169 -17.16063 -16.92359 -16.49792 -16.42922 -16.20197 -15.69656 -14.98711 -14.49139 -14.23699 -14.18605 -13.75475 -13.54726 -13.08241 -12.91299 -12.84165 -12.42565 -12.30423 -12.15154 -11.91400 -11.85092 -11.77256 -11.66036 -11.43908 -11.35523 -11.26035 -10.73818 -9.71602 -9.02454 -8.41932 -6.57104 0.38810 0.55453 1.37386 1.42583 1.51122 2.25464 2.71477 2.81718 2.92614 3.66782 3.81093 3.88139 3.96748 4.18844 4.28082 4.39807 4.48134 4.56430 4.62722 4.67918 4.73143 4.76798 4.90918 4.92953 4.93849 5.07693 5.10562 5.16241 5.31463 5.38217 5.41187 5.44251 5.50201 5.54770 5.57251 5.71651 5.81182 5.98146 6.48036 6.78255 7.15297 8.70308 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.055023 B = 0.003994 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.753811 B = 7009.290231 C = 7281.406694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.562 4.562 8 H 0.066 0.934 9 C 0.214 3.786 10 O -0.341 6.341 11 C 0.109 3.891 12 C -0.237 4.237 13 C -0.076 4.076 14 C -0.156 4.156 15 C -0.031 4.031 16 C -0.053 4.053 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.175 4.175 22 H 0.275 0.725 23 H 0.000 1.000 24 H -0.001 1.001 25 H 0.107 0.893 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -20.755 -0.017 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.812 3.188 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.599 4.599 8 H 0.085 0.915 9 C 0.140 3.860 10 O -0.255 6.255 11 C 0.063 3.937 12 C -0.256 4.256 13 C -0.094 4.094 14 C -0.174 4.174 15 C -0.031 4.031 16 C -0.072 4.072 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.194 4.194 22 H 0.084 0.916 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.125 0.875 26 H 0.164 0.836 27 H 0.168 0.832 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.919 -20.567 -0.012 20.773 hybrid contribution -0.180 1.495 0.021 1.506 sum 2.739 -19.071 0.008 19.267 Atomic orbital electron populations 1.70053 1.07811 1.29190 1.49324 1.25998 0.96052 1.03449 0.93295 0.85137 0.78074 0.76096 0.79539 1.18836 1.19624 1.18827 1.21308 0.94383 0.90217 1.53974 0.91542 1.20149 0.88406 0.82696 0.94714 1.86027 1.38835 1.13036 1.87602 1.19683 0.93071 0.85551 0.95387 1.21422 0.94007 0.99591 1.10596 1.21190 1.01047 0.90755 0.96368 1.21057 0.92351 0.99222 1.04798 1.19906 0.94779 0.92896 0.95518 1.20867 0.97509 0.91832 0.96962 1.22519 1.02086 0.94766 0.96102 1.22506 1.01498 0.95586 0.96100 1.22374 1.00971 0.95996 0.96482 1.22248 1.01699 0.95402 0.96103 1.20508 0.99381 0.90341 1.09149 0.91637 0.98267 0.98287 0.87507 0.83559 0.83184 0.90358 0.91298 0.91482 0.90954 0.90430 0.90574 0.91225 0.91090 0.92189 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 2 C 0.01 0.67 5.46 84.66 0.46 1.13 16 3 Si 0.99 44.21 29.54 68.60 2.03 46.24 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.56 -34.02 9.43 25.60 0.24 -33.78 16 8 H 0.07 3.95 7.81 -2.91 -0.02 3.93 16 9 C 0.21 12.48 4.49 71.24 0.32 12.80 16 10 O -0.34 -18.28 10.12 -92.47 -0.94 -19.22 16 11 C 0.11 4.89 6.69 22.51 0.15 5.05 16 12 C -0.24 -9.82 9.04 22.37 0.20 -9.61 16 13 C -0.08 -2.38 10.04 22.25 0.22 -2.16 16 14 C -0.16 -4.22 8.10 22.28 0.18 -4.04 16 15 C -0.03 -0.89 4.69 -19.88 -0.09 -0.98 16 16 C -0.05 -1.14 3.13 -10.81 -0.03 -1.17 16 17 C -0.12 -2.08 6.27 31.70 0.20 -1.88 16 18 C -0.12 -1.59 6.91 31.91 0.22 -1.37 16 19 C -0.12 -1.64 6.83 31.67 0.22 -1.43 16 20 C -0.12 -2.10 6.24 31.32 0.20 -1.90 16 21 C -0.18 -6.44 9.62 22.37 0.22 -6.22 16 22 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 23 H 0.00 -0.03 7.65 -2.39 -0.02 -0.05 16 24 H 0.00 -0.04 7.68 -2.39 -0.02 -0.06 16 25 H 0.11 4.84 6.30 -2.91 -0.02 4.83 16 26 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 27 H 0.15 3.02 7.77 -2.91 -0.02 3.00 16 28 H 0.08 1.68 7.91 -2.39 -0.02 1.66 16 29 H 0.07 1.28 6.91 -2.39 -0.02 1.26 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.06 1.20 7.28 -2.39 -0.02 1.19 16 37 H 0.13 4.40 7.96 -2.91 -0.02 4.38 16 Total: -1.00 -66.97 303.69 5.11 -61.86 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 1.03 Total: 11.95 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 2.70 Total: -45.57 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.94 Total: -19.22 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.97 5.11 -61.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.314 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds