Wall clock time and date at job start Mon Mar 30 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38165 * 120.03232 * 2 1 4 4 C 1.50704 * 119.96949 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.05927 * 180.02562 * 3 2 1 6 6 C 1.50696 * 119.94130 * 179.97438 * 5 3 2 7 7 H 1.08997 * 109.47776 * 353.81914 * 6 5 3 8 8 C 1.50702 * 109.47017 * 233.81696 * 6 5 3 9 9 H 1.08000 * 120.00407 * 274.94419 * 8 6 5 10 10 C 1.37878 * 119.99816 * 94.94345 * 8 6 5 11 11 N 1.31507 * 120.00175 * 356.90037 * 10 8 6 12 12 Si 1.86805 * 120.00013 * 176.90109 * 10 8 6 13 13 H 1.48501 * 109.47227 * 59.99813 * 12 10 8 14 14 H 1.48500 * 109.46775 * 300.00221 * 12 10 8 15 15 H 1.48498 * 109.47044 * 179.97438 * 12 10 8 16 16 C 1.52998 * 109.46941 * 113.82362 * 6 5 3 17 17 C 1.53001 * 117.49633 * 245.58234 * 16 6 5 18 18 C 1.53006 * 117.49825 * 176.92540 * 16 6 5 19 19 C 1.38288 * 120.11072 * 0.27156 * 5 3 2 20 20 C 1.38122 * 120.05079 * 359.45580 * 19 5 3 21 21 C 1.38713 * 120.02771 * 180.02562 * 2 1 3 22 22 O 1.35898 * 120.05282 * 359.95260 * 21 2 1 23 23 H 1.08995 * 109.47300 * 89.99798 * 1 2 3 24 24 H 1.08997 * 109.46872 * 210.00390 * 1 2 3 25 25 H 1.08997 * 109.46747 * 329.99803 * 1 2 3 26 26 H 1.09000 * 109.47232 * 269.96957 * 4 3 2 27 27 H 1.09001 * 109.46865 * 29.97374 * 4 3 2 28 28 H 1.08996 * 109.47272 * 149.97225 * 4 3 2 29 29 H 0.96997 * 120.00281 * 5.49072 * 11 10 8 30 30 H 1.08998 * 115.55361 * 31.25138 * 16 6 5 31 31 H 1.09002 * 117.50080 * 359.97438 * 17 16 6 32 32 H 1.09003 * 117.49675 * 145.01920 * 17 16 6 33 33 H 1.09003 * 117.49552 * 214.97477 * 18 16 6 34 34 H 1.08999 * 117.49862 * 359.97438 * 18 16 6 35 35 H 1.07996 * 119.97089 * 179.72438 * 19 5 3 36 36 H 1.08006 * 120.02259 * 180.27826 * 20 19 5 37 37 H 0.96696 * 114.00200 * 90.00592 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 1.4450 2.5013 0.0006 5 6 3.5810 1.1968 -0.0005 6 6 4.3325 2.5030 -0.0011 7 1 3.6282 3.3275 -0.1117 8 6 5.3096 2.5198 -1.1483 9 1 6.2877 2.0771 -1.0312 10 6 4.9549 3.1004 -2.3475 11 7 3.7433 3.5851 -2.5105 12 14 6.1953 3.1985 -3.7408 13 1 6.6247 1.8281 -4.1188 14 1 7.3761 3.9827 -3.2979 15 1 5.5711 3.8623 -4.9134 16 6 5.0924 2.6547 1.3181 17 6 4.6618 3.7848 2.2554 18 6 5.9798 3.8900 1.4842 19 6 4.2753 0.0009 -0.0067 20 6 3.5887 -1.1976 -0.0011 21 6 2.2012 -1.2010 -0.0005 22 8 1.5233 -2.3788 -0.0001 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.2634 2.8165 -1.0269 27 1 0.4926 2.3707 0.5144 28 1 2.0341 3.2607 0.5148 29 1 3.1250 3.6066 -1.7635 30 1 5.4332 1.7252 1.7740 31 1 3.8374 4.4204 1.9320 32 1 4.7197 3.5987 3.3279 33 1 6.9044 3.7731 2.0497 34 1 6.0227 4.5943 0.6534 35 1 5.3552 0.0040 -0.0116 36 1 4.1314 -2.1313 -0.0014 37 1 1.3266 -2.7197 -0.8833 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260326118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:32 Heat of formation + Delta-G solvation = -13.428313 kcal Electronic energy + Delta-G solvation = -18203.988986 eV Core-core repulsion = 15525.434071 eV Total energy + Delta-G solvation = -2678.554915 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.56371 -37.38887 -35.90021 -33.19787 -32.74233 -30.73838 -28.11463 -25.78415 -25.63110 -23.51355 -21.59045 -20.82530 -20.40834 -19.27231 -17.42933 -16.66296 -15.66476 -15.38562 -14.75178 -13.85494 -13.65382 -13.60304 -13.29652 -12.89277 -12.84275 -12.36990 -12.23367 -12.11965 -11.59643 -11.39481 -10.99619 -10.94032 -10.79773 -10.76590 -10.43786 -10.17613 -9.85211 -9.66982 -9.51416 -9.33229 -8.44816 -8.43318 -7.89121 -7.42961 -6.38788 -4.08993 2.03316 2.06129 3.41570 3.42023 3.60726 4.30882 4.47288 4.71492 4.79779 5.28669 5.40549 5.42770 5.56797 5.71637 5.76856 5.80694 5.88841 5.92420 6.01645 6.18307 6.22688 6.31900 6.32604 6.40320 6.44135 6.51091 6.65374 6.72170 6.82695 6.91870 7.00808 7.10929 7.17167 7.40505 7.60543 7.66577 8.13948 8.18960 8.40550 8.84497 9.60311 11.00453 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.008837 C = 0.007654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.020871 B = 3167.599906 C = 3657.207502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.115 4.115 3 C -0.083 4.083 4 C -0.113 4.113 5 C -0.028 4.028 6 C 0.078 3.922 7 H 0.057 0.943 8 C -0.576 4.576 9 H 0.052 0.948 10 C 0.024 3.976 11 N -0.911 5.911 12 Si 1.063 2.937 13 H -0.288 1.288 14 H -0.287 1.287 15 H -0.283 1.283 16 C -0.117 4.117 17 C -0.201 4.201 18 C -0.167 4.167 19 C -0.096 4.096 20 C -0.152 4.152 21 C 0.067 3.933 22 O -0.502 6.502 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.273 0.727 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 -4.582 4.682 7.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.083 4.083 4 C -0.169 4.169 5 C -0.028 4.028 6 C 0.059 3.941 7 H 0.075 0.925 8 C -0.614 4.614 9 H 0.070 0.930 10 C -0.181 4.181 11 N -0.548 5.548 12 Si 0.891 3.109 13 H -0.215 1.215 14 H -0.214 1.214 15 H -0.209 1.209 16 C -0.135 4.135 17 C -0.239 4.239 18 C -0.204 4.204 19 C -0.114 4.114 20 C -0.171 4.171 21 C 0.023 3.977 22 O -0.311 6.311 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.747 -4.047 3.711 6.140 hybrid contribution -0.055 -0.741 0.987 1.235 sum -2.802 -4.788 4.699 7.270 Atomic orbital electron populations 1.20662 0.91885 1.02280 1.01604 1.19861 0.95733 0.92331 1.03672 1.19514 0.93640 0.93912 1.01242 1.20867 0.98757 0.94783 1.02531 1.20623 0.92162 0.97552 0.92474 1.17847 0.94290 0.90575 0.91345 0.92491 1.21750 1.00554 1.40928 0.98145 0.92989 1.25765 0.98946 0.93471 0.99941 1.70802 1.05316 1.44295 1.34382 0.83622 0.74805 0.76500 0.75925 1.21503 1.21385 1.20859 1.22408 1.01969 0.91681 0.97449 1.23010 0.99218 1.04855 0.96770 1.22735 0.92756 1.02886 1.02067 1.20793 0.99864 0.91100 0.99612 1.21233 0.93254 0.98383 1.04196 1.18046 0.89704 0.84177 1.05753 1.84770 1.76884 1.36686 1.32714 0.92018 0.91806 0.91573 0.90850 0.92466 0.91341 0.91429 0.89844 0.89718 0.90419 0.90509 0.88533 0.86178 0.86821 0.77003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.38 36.01 0.34 -1.32 16 2 C -0.12 -2.19 5.89 -104.47 -0.62 -2.80 16 3 C -0.08 -1.72 5.88 -104.64 -0.62 -2.34 16 4 C -0.11 -2.14 8.33 36.01 0.30 -1.84 16 5 C -0.03 -0.61 4.77 -104.60 -0.50 -1.11 16 6 C 0.08 1.82 1.78 -92.93 -0.17 1.65 16 7 H 0.06 1.41 3.59 -51.93 -0.19 1.22 16 8 C -0.58 -15.01 7.18 -34.44 -0.25 -15.25 16 9 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 10 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 11 N -0.91 -25.99 13.63 55.43 0.76 -25.24 16 12 Si 1.06 24.45 29.90 -169.99 -5.08 19.37 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 C -0.12 -2.41 5.09 -90.62 -0.46 -2.87 16 17 C -0.20 -3.65 10.18 -26.69 -0.27 -3.93 16 18 C -0.17 -3.21 9.81 -26.69 -0.26 -3.47 16 19 C -0.10 -2.02 8.71 -39.61 -0.35 -2.36 16 20 C -0.15 -2.90 9.99 -39.43 -0.39 -3.29 16 21 C 0.07 1.25 6.68 -39.22 -0.26 0.98 16 22 O -0.50 -7.94 12.55 -19.42 -0.24 -8.19 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.92 7.53 -51.93 -0.39 0.53 16 25 H 0.07 0.94 5.95 -51.93 -0.31 0.64 16 26 H 0.07 1.48 7.44 -51.93 -0.39 1.09 16 27 H 0.06 0.91 5.94 -51.93 -0.31 0.60 16 28 H 0.07 1.32 6.21 -51.93 -0.32 1.00 16 29 H 0.27 7.53 5.15 -40.82 -0.21 7.32 16 30 H 0.08 1.68 7.74 -51.93 -0.40 1.28 16 31 H 0.08 1.54 8.04 -51.93 -0.42 1.12 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.10 2.02 8.07 -51.93 -0.42 1.60 16 35 H 0.12 2.49 7.88 -52.49 -0.41 2.08 16 36 H 0.11 1.90 8.06 -52.48 -0.42 1.47 16 37 H 0.38 4.27 9.06 45.56 0.41 4.69 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -29.44 299.43 -7.91 -37.35 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.25 Total: 9.60 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: -3.60 Total: -37.40 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.76 Total: -25.24 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.24 Total: -8.19 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.44 -7.91 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260326118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.917 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds