Wall clock time and date at job start Mon Mar 30 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38165 * 120.03232 * 2 1 4 4 C 1.50704 * 119.96949 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.05927 * 180.02562 * 3 2 1 6 6 C 1.50696 * 119.94130 * 179.97438 * 5 3 2 7 7 H 1.08997 * 109.47776 * 353.81914 * 6 5 3 8 8 C 1.50702 * 109.47017 * 233.81696 * 6 5 3 9 9 H 1.08000 * 120.00407 * 274.94419 * 8 6 5 10 10 C 1.37878 * 119.99816 * 94.94345 * 8 6 5 11 11 N 1.31507 * 120.00175 * 356.90037 * 10 8 6 12 12 Si 1.86805 * 120.00013 * 176.90109 * 10 8 6 13 13 H 1.48501 * 109.47227 * 59.99813 * 12 10 8 14 14 H 1.48500 * 109.46775 * 300.00221 * 12 10 8 15 15 H 1.48498 * 109.47044 * 179.97438 * 12 10 8 16 16 C 1.52998 * 109.46941 * 113.82362 * 6 5 3 17 17 C 1.53001 * 117.49633 * 245.58234 * 16 6 5 18 18 C 1.53006 * 117.49825 * 176.92540 * 16 6 5 19 19 C 1.38288 * 120.11072 * 0.27156 * 5 3 2 20 20 C 1.38122 * 120.05079 * 359.45580 * 19 5 3 21 21 C 1.38713 * 120.02771 * 180.02562 * 2 1 3 22 22 O 1.35898 * 120.05282 * 359.95260 * 21 2 1 23 23 H 1.08995 * 109.47300 * 89.99798 * 1 2 3 24 24 H 1.08997 * 109.46872 * 210.00390 * 1 2 3 25 25 H 1.08997 * 109.46747 * 329.99803 * 1 2 3 26 26 H 1.09000 * 109.47232 * 269.96957 * 4 3 2 27 27 H 1.09001 * 109.46865 * 29.97374 * 4 3 2 28 28 H 1.08996 * 109.47272 * 149.97225 * 4 3 2 29 29 H 0.96997 * 120.00281 * 5.49072 * 11 10 8 30 30 H 1.08998 * 115.55361 * 31.25138 * 16 6 5 31 31 H 1.09002 * 117.50080 * 359.97438 * 17 16 6 32 32 H 1.09003 * 117.49675 * 145.01920 * 17 16 6 33 33 H 1.09003 * 117.49552 * 214.97477 * 18 16 6 34 34 H 1.08999 * 117.49862 * 359.97438 * 18 16 6 35 35 H 1.07996 * 119.97089 * 179.72438 * 19 5 3 36 36 H 1.08006 * 120.02259 * 180.27826 * 20 19 5 37 37 H 0.96696 * 114.00200 * 90.00592 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 1.4450 2.5013 0.0006 5 6 3.5810 1.1968 -0.0005 6 6 4.3325 2.5030 -0.0011 7 1 3.6282 3.3275 -0.1117 8 6 5.3096 2.5198 -1.1483 9 1 6.2877 2.0771 -1.0312 10 6 4.9549 3.1004 -2.3475 11 7 3.7433 3.5851 -2.5105 12 14 6.1953 3.1985 -3.7408 13 1 6.6247 1.8281 -4.1188 14 1 7.3761 3.9827 -3.2979 15 1 5.5711 3.8623 -4.9134 16 6 5.0924 2.6547 1.3181 17 6 4.6618 3.7848 2.2554 18 6 5.9798 3.8900 1.4842 19 6 4.2753 0.0009 -0.0067 20 6 3.5887 -1.1976 -0.0011 21 6 2.2012 -1.2010 -0.0005 22 8 1.5233 -2.3788 -0.0001 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.2634 2.8165 -1.0269 27 1 0.4926 2.3707 0.5144 28 1 2.0341 3.2607 0.5148 29 1 3.1250 3.6066 -1.7635 30 1 5.4332 1.7252 1.7740 31 1 3.8374 4.4204 1.9320 32 1 4.7197 3.5987 3.3279 33 1 6.9044 3.7731 2.0497 34 1 6.0227 4.5943 0.6534 35 1 5.3552 0.0040 -0.0116 36 1 4.1314 -2.1313 -0.0014 37 1 1.3266 -2.7197 -0.8833 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260326118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:31 Heat of formation + Delta-G solvation = -29.516644 kcal Electronic energy + Delta-G solvation = -18204.686629 eV Core-core repulsion = 15525.434071 eV Total energy + Delta-G solvation = -2679.252557 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06269 -38.91013 -37.34364 -35.03585 -34.25378 -32.33893 -29.70254 -27.31534 -27.16670 -25.41254 -23.11201 -22.34720 -21.90421 -20.95397 -18.87061 -18.49382 -17.21466 -16.87294 -16.15193 -15.70615 -15.30799 -15.11541 -14.83548 -14.56075 -14.30795 -13.82044 -13.73214 -13.54606 -13.25443 -12.95177 -12.67960 -12.43048 -12.30457 -12.25943 -12.00837 -11.97781 -11.41940 -11.34839 -11.13373 -10.96207 -10.44106 -10.22684 -9.40064 -9.01648 -8.47834 -6.17949 0.51763 0.52828 1.53570 1.59758 1.78126 2.58404 2.81536 3.13345 3.30143 3.42831 3.90693 4.04420 4.07313 4.20991 4.27745 4.30747 4.43993 4.53335 4.63253 4.75910 4.79776 4.81576 4.84871 4.92104 4.97115 5.04806 5.12147 5.22255 5.27447 5.37046 5.47194 5.52406 5.59252 5.80491 5.93940 6.10787 6.27989 6.34857 6.79329 6.92814 7.57422 8.92826 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.008837 C = 0.007654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.020871 B = 3167.599906 C = 3657.207502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.122 4.122 3 C -0.101 4.101 4 C -0.104 4.104 5 C -0.055 4.055 6 C 0.080 3.920 7 H 0.037 0.963 8 C -0.575 4.575 9 H 0.042 0.958 10 C -0.025 4.025 11 N -0.943 5.943 12 Si 1.101 2.899 13 H -0.278 1.278 14 H -0.272 1.272 15 H -0.289 1.289 16 C -0.138 4.138 17 C -0.180 4.180 18 C -0.167 4.167 19 C -0.113 4.113 20 C -0.154 4.154 21 C 0.074 3.926 22 O -0.499 6.499 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.268 0.732 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -5.848 5.491 8.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.123 4.123 3 C -0.102 4.102 4 C -0.161 4.161 5 C -0.055 4.055 6 C 0.061 3.939 7 H 0.055 0.945 8 C -0.613 4.613 9 H 0.060 0.940 10 C -0.224 4.224 11 N -0.582 5.582 12 Si 0.925 3.075 13 H -0.204 1.204 14 H -0.198 1.198 15 H -0.214 1.214 16 C -0.156 4.156 17 C -0.216 4.216 18 C -0.204 4.204 19 C -0.131 4.131 20 C -0.173 4.173 21 C 0.030 3.970 22 O -0.311 6.311 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.278 -5.330 4.527 7.723 hybrid contribution 0.064 -0.452 0.795 0.917 sum -3.213 -5.783 5.322 8.490 Atomic orbital electron populations 1.20702 0.89210 1.03436 1.02642 1.20253 0.97767 0.91737 1.02500 1.19756 0.93377 0.95321 1.01698 1.20782 0.99880 0.93851 1.01553 1.20582 0.93141 0.97205 0.94618 1.17709 0.93647 0.90762 0.91767 0.94503 1.21996 1.00618 1.39668 0.99055 0.94004 1.26866 0.99698 0.93416 1.02377 1.70867 1.06221 1.46543 1.34596 0.83123 0.73637 0.77075 0.73667 1.20410 1.19779 1.21443 1.22322 1.03366 0.92629 0.97328 1.23049 0.98203 1.02512 0.97884 1.22734 0.94412 1.01356 1.01932 1.20815 0.99680 0.91747 1.00855 1.21462 0.93896 0.98477 1.03428 1.18115 0.89652 0.85052 1.04210 1.84707 1.76299 1.35335 1.34739 0.90897 0.90471 0.90586 0.92711 0.89382 0.92536 0.91938 0.89519 0.90209 0.87457 0.88002 0.90919 0.86933 0.84534 0.74252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.87 9.38 71.24 0.67 -2.20 16 2 C -0.12 -4.40 5.89 -19.77 -0.12 -4.52 16 3 C -0.10 -4.18 5.88 -19.88 -0.12 -4.30 16 4 C -0.10 -3.96 8.33 71.24 0.59 -3.36 16 5 C -0.05 -2.48 4.77 -19.85 -0.09 -2.58 16 6 C 0.08 3.81 1.78 -12.29 -0.02 3.79 16 7 H 0.04 1.90 3.59 -2.39 -0.01 1.89 16 8 C -0.58 -30.73 7.18 25.60 0.18 -30.55 16 9 H 0.04 2.25 7.82 -2.91 -0.02 2.23 16 10 C -0.02 -1.36 5.46 84.66 0.46 -0.90 16 11 N -0.94 -55.38 13.63 21.45 0.29 -55.09 16 12 Si 1.10 49.94 29.90 68.60 2.05 51.99 16 13 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 15 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 16 C -0.14 -5.71 5.09 -10.79 -0.05 -5.77 16 17 C -0.18 -6.32 10.18 30.62 0.31 -6.01 16 18 C -0.17 -6.35 9.81 30.62 0.30 -6.05 16 19 C -0.11 -4.77 8.71 22.25 0.19 -4.58 16 20 C -0.15 -5.66 9.99 22.37 0.22 -5.43 16 21 C 0.07 2.58 6.68 22.51 0.15 2.73 16 22 O -0.50 -14.06 12.55 -92.40 -1.16 -15.22 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.08 1.94 7.53 -2.39 -0.02 1.92 16 25 H 0.08 1.94 5.95 -2.39 -0.01 1.93 16 26 H 0.05 2.26 7.44 -2.39 -0.02 2.24 16 27 H 0.09 2.68 5.94 -2.39 -0.01 2.67 16 28 H 0.06 2.23 6.21 -2.39 -0.01 2.22 16 29 H 0.27 15.42 5.15 -92.71 -0.48 14.94 16 30 H 0.09 3.49 7.74 -2.39 -0.02 3.47 16 31 H 0.08 2.88 8.04 -2.39 -0.02 2.86 16 32 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.07 3.09 8.07 -2.39 -0.02 3.07 16 35 H 0.11 4.78 7.88 -2.91 -0.02 4.75 16 36 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.40 7.56 9.06 -74.06 -0.67 6.89 16 Total: -1.00 -63.72 299.43 4.57 -59.15 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.70 Total: 28.88 kcal Atomic # 6 Polarization: -72.40 SS G_CDS: 2.68 Total: -69.72 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.29 Total: -55.09 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -1.16 Total: -15.22 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 2.05 Total: 51.99 kcal Total: -63.72 4.57 -59.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260326118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.637 kcal (2) G-P(sol) polarization free energy of solvation -63.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds