Wall clock time and date at job start Mon Mar 30 2020 05:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 120.00076 * 2 1 4 4 H 1.48498 * 109.47252 * 239.99406 * 3 2 1 5 5 H 1.48502 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47028 * 119.99538 * 3 2 1 7 7 C 1.38662 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99819 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99798 * 185.05357 * 9 7 2 11 11 C 1.38906 * 120.06876 * 354.46689 * 10 9 7 12 12 C 1.38070 * 119.93086 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.07090 * 0.02640 * 12 11 10 14 14 C 1.38281 * 120.13850 * 0.25168 * 13 12 11 15 15 C 1.50697 * 119.96936 * 179.70395 * 14 13 12 16 16 C 1.52998 * 109.47113 * 59.99738 * 15 14 13 17 17 C 1.52999 * 109.47279 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47370 * 59.99824 * 17 16 15 19 19 C 1.52998 * 109.47063 * 300.00308 * 18 17 16 20 20 C 1.52999 * 109.47279 * 59.99636 * 19 18 17 21 21 C 1.38123 * 120.06699 * 359.44674 * 14 13 12 22 22 H 0.96997 * 120.00481 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.03046 * 359.97438 * 11 10 9 24 24 H 1.08003 * 119.96711 * 179.97438 * 12 11 10 25 25 H 1.08001 * 119.93613 * 179.97438 * 13 12 11 26 26 H 1.09004 * 109.47434 * 179.97438 * 15 14 13 27 27 H 1.09004 * 109.47000 * 300.00302 * 16 15 14 28 28 H 1.09004 * 109.47376 * 60.00156 * 16 15 14 29 29 H 1.09004 * 109.47050 * 299.99902 * 17 16 15 30 30 H 1.09004 * 109.47218 * 180.02562 * 17 16 15 31 31 H 1.08995 * 109.47250 * 180.02562 * 18 17 16 32 32 H 1.09004 * 109.46970 * 60.00029 * 18 17 16 33 33 H 1.09004 * 109.47000 * 299.99703 * 19 18 17 34 34 H 1.09004 * 109.47376 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47218 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.47050 * 60.00098 * 20 19 18 37 37 H 1.08003 * 120.03862 * 180.27880 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1032 1.6964 1.2126 7 6 2.0089 -1.2009 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 3.4574 -3.4395 0.0952 12 6 4.2024 -4.5968 0.2048 13 6 3.5686 -5.8202 0.3264 14 6 2.1875 -5.8890 0.3334 15 6 1.5009 -7.2245 0.4593 16 6 1.9110 -7.8866 1.7762 17 6 1.2145 -9.2428 1.9039 18 6 1.6241 -10.1388 0.7333 19 6 1.2140 -9.4767 -0.5836 20 6 1.9106 -8.1205 -0.7112 21 6 1.4366 -4.7343 0.2303 22 1 -0.4851 0.8400 -0.0004 23 1 3.9528 -2.4846 -0.0002 24 1 5.2812 -4.5469 0.1948 25 1 4.1534 -6.7241 0.4116 26 1 0.4205 -7.0803 0.4466 27 1 2.9914 -8.0307 1.7894 28 1 1.6195 -7.2481 2.6102 29 1 0.1340 -9.0990 1.8906 30 1 1.5063 -9.7143 2.8423 31 1 1.1275 -11.1048 0.8240 32 1 2.7046 -10.2826 0.7466 33 1 0.1336 -9.3329 -0.5969 34 1 1.5062 -10.1148 -1.4176 35 1 1.6187 -7.6490 -1.6497 36 1 2.9910 -8.2643 -0.6979 37 1 0.3579 -4.7881 0.2403 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260328633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:39 Heat of formation + Delta-G solvation = -36.105052 kcal Electronic energy + Delta-G solvation = -17370.942912 eV Core-core repulsion = 14691.404660 eV Total energy + Delta-G solvation = -2679.538252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45332 -38.18614 -36.12576 -32.34983 -31.91729 -30.65527 -29.39490 -27.79256 -25.33336 -22.91343 -22.44758 -21.69066 -20.55122 -19.30763 -17.59449 -16.92411 -15.29636 -15.08402 -14.53402 -14.36840 -14.09480 -14.01376 -13.85596 -13.56377 -12.78595 -12.60091 -12.48109 -12.13382 -12.10124 -11.65766 -11.20697 -11.10149 -11.05356 -10.93795 -10.78199 -10.69668 -10.49349 -10.19133 -9.98576 -9.88048 -9.28848 -8.80414 -7.98844 -7.17806 -6.41483 -4.00801 2.21165 2.43095 3.14804 3.16057 3.18653 3.99131 4.56738 4.72710 4.82243 4.90346 5.11638 5.19169 5.37337 5.38266 5.55894 5.59538 5.59689 5.67922 5.69312 5.74247 5.93461 6.00287 6.05513 6.13119 6.17011 6.23356 6.26811 6.31947 6.42394 6.49800 6.57258 6.77287 6.97973 7.11604 7.37938 7.43595 7.48443 7.88429 8.03664 9.04190 9.75362 10.76712 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.047195 B = 0.004547 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.136484 B = 6156.173248 C = 6404.267265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.237 4.237 12 C -0.075 4.075 13 C -0.206 4.206 14 C -0.038 4.038 15 C -0.042 4.042 16 C -0.109 4.109 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.189 4.189 22 H 0.270 0.730 23 H 0.125 0.875 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 -14.913 1.188 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.256 4.256 12 C -0.093 4.093 13 C -0.225 4.225 14 C -0.038 4.038 15 C -0.060 4.060 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.146 4.146 21 C -0.208 4.208 22 H 0.080 0.920 23 H 0.142 0.858 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.795 -14.685 1.164 15.212 hybrid contribution 0.572 0.949 -0.014 1.108 sum 4.367 -13.736 1.150 14.459 Atomic orbital electron populations 1.70028 1.05935 1.27687 1.46318 1.25272 0.95826 0.98765 0.96630 0.85795 0.78696 0.79865 0.79150 1.19544 1.20293 1.19535 1.21271 0.91748 0.80898 1.52940 0.89200 1.83977 1.34265 1.11393 1.78719 1.19351 0.90274 0.88012 0.92274 1.21155 0.93840 0.98932 1.11720 1.20718 0.98305 0.92450 0.97852 1.20373 0.93632 0.96710 1.11791 1.19295 0.93317 0.93097 0.98078 1.20079 0.99511 0.91675 0.94782 1.21574 1.00440 0.95429 0.97193 1.21556 1.00524 0.95860 0.97786 1.21533 1.01001 0.98052 0.95021 1.21557 1.00520 0.96574 0.97075 1.21572 1.00442 0.94448 0.98158 1.20083 0.99221 0.89934 1.11551 0.92035 0.85758 0.87666 0.87855 0.90897 0.91839 0.91868 0.92090 0.92321 0.92524 0.92169 0.92084 0.92323 0.91889 0.91837 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.67 13.67 55.48 0.76 -24.91 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 9 O -0.18 -5.24 9.76 0.05 0.00 -5.24 16 10 C 0.15 3.83 6.65 -39.10 -0.26 3.57 16 11 C -0.24 -5.30 9.17 -39.40 -0.36 -5.66 16 12 C -0.07 -1.42 10.04 -39.61 -0.40 -1.81 16 13 C -0.21 -3.63 8.71 -39.53 -0.34 -3.97 16 14 C -0.04 -0.68 4.78 -104.65 -0.50 -1.18 16 15 C -0.04 -0.60 2.36 -91.77 -0.22 -0.82 16 16 C -0.11 -1.38 5.02 -26.73 -0.13 -1.51 16 17 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 18 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 19 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 20 C -0.11 -1.37 5.02 -26.73 -0.13 -1.51 16 21 C -0.19 -4.10 9.62 -39.39 -0.38 -4.47 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.12 2.77 5.64 -52.49 -0.30 2.48 16 24 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 25 H 0.10 1.56 7.09 -52.49 -0.37 1.19 16 26 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 27 H 0.06 0.79 7.38 -51.93 -0.38 0.41 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.79 7.38 -51.93 -0.38 0.41 16 37 H 0.11 2.43 7.94 -52.48 -0.42 2.01 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -30.12 298.43 -8.25 -38.37 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.47 Total: 2.92 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -3.01 Total: -31.38 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.76 Total: -24.91 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.12 -8.25 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.263 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds