Wall clock time and date at job start Mon Mar 30 2020 05:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 120.00076 * 2 1 4 4 H 1.48498 * 109.47252 * 239.99406 * 3 2 1 5 5 H 1.48502 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47028 * 119.99538 * 3 2 1 7 7 C 1.38662 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99819 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99798 * 185.05357 * 9 7 2 11 11 C 1.38906 * 120.06876 * 354.46689 * 10 9 7 12 12 C 1.38070 * 119.93086 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.07090 * 0.02640 * 12 11 10 14 14 C 1.38281 * 120.13850 * 0.25168 * 13 12 11 15 15 C 1.50697 * 119.96936 * 179.70395 * 14 13 12 16 16 C 1.52998 * 109.47113 * 59.99738 * 15 14 13 17 17 C 1.52999 * 109.47279 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47370 * 59.99824 * 17 16 15 19 19 C 1.52998 * 109.47063 * 300.00308 * 18 17 16 20 20 C 1.52999 * 109.47279 * 59.99636 * 19 18 17 21 21 C 1.38123 * 120.06699 * 359.44674 * 14 13 12 22 22 H 0.96997 * 120.00481 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.03046 * 359.97438 * 11 10 9 24 24 H 1.08003 * 119.96711 * 179.97438 * 12 11 10 25 25 H 1.08001 * 119.93613 * 179.97438 * 13 12 11 26 26 H 1.09004 * 109.47434 * 179.97438 * 15 14 13 27 27 H 1.09004 * 109.47000 * 300.00302 * 16 15 14 28 28 H 1.09004 * 109.47376 * 60.00156 * 16 15 14 29 29 H 1.09004 * 109.47050 * 299.99902 * 17 16 15 30 30 H 1.09004 * 109.47218 * 180.02562 * 17 16 15 31 31 H 1.08995 * 109.47250 * 180.02562 * 18 17 16 32 32 H 1.09004 * 109.46970 * 60.00029 * 18 17 16 33 33 H 1.09004 * 109.47000 * 299.99703 * 19 18 17 34 34 H 1.09004 * 109.47376 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47218 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.47050 * 60.00098 * 20 19 18 37 37 H 1.08003 * 120.03862 * 180.27880 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1032 1.6964 1.2126 7 6 2.0089 -1.2009 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 3.4574 -3.4395 0.0952 12 6 4.2024 -4.5968 0.2048 13 6 3.5686 -5.8202 0.3264 14 6 2.1875 -5.8890 0.3334 15 6 1.5009 -7.2245 0.4593 16 6 1.9110 -7.8866 1.7762 17 6 1.2145 -9.2428 1.9039 18 6 1.6241 -10.1388 0.7333 19 6 1.2140 -9.4767 -0.5836 20 6 1.9106 -8.1205 -0.7112 21 6 1.4366 -4.7343 0.2303 22 1 -0.4851 0.8400 -0.0004 23 1 3.9528 -2.4846 -0.0002 24 1 5.2812 -4.5469 0.1948 25 1 4.1534 -6.7241 0.4116 26 1 0.4205 -7.0803 0.4466 27 1 2.9914 -8.0307 1.7894 28 1 1.6195 -7.2481 2.6102 29 1 0.1340 -9.0990 1.8906 30 1 1.5063 -9.7143 2.8423 31 1 1.1275 -11.1048 0.8240 32 1 2.7046 -10.2826 0.7466 33 1 0.1336 -9.3329 -0.5969 34 1 1.5062 -10.1148 -1.4176 35 1 1.6187 -7.6490 -1.6497 36 1 2.9910 -8.2643 -0.6979 37 1 0.3579 -4.7881 0.2403 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260328633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:39 Heat of formation + Delta-G solvation = -52.130603 kcal Electronic energy + Delta-G solvation = -17371.637832 eV Core-core repulsion = 14691.404660 eV Total energy + Delta-G solvation = -2680.233172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00285 -39.61943 -37.69652 -34.32677 -33.27020 -31.57045 -31.04766 -29.22444 -27.36205 -24.21349 -23.36732 -23.32081 -21.95704 -20.43138 -19.45025 -18.71722 -16.76813 -16.52578 -16.17676 -15.91315 -15.54476 -15.38443 -14.99312 -14.91360 -14.26297 -14.20859 -13.72847 -13.54623 -13.40322 -13.01615 -12.85753 -12.49972 -12.38072 -12.35252 -12.15766 -11.95946 -11.84119 -11.33647 -11.18371 -10.98815 -10.88542 -10.78042 -9.60024 -8.96947 -8.47469 -6.16513 0.56954 0.75159 1.33931 1.45260 1.50674 2.17501 2.82494 3.15692 3.40889 3.83470 3.87412 3.98718 4.13860 4.29717 4.34330 4.39565 4.45571 4.58073 4.63281 4.68653 4.71442 4.74919 4.80766 4.93624 5.12604 5.17730 5.21182 5.23203 5.31310 5.31660 5.34549 5.44522 5.51624 5.60252 5.68532 5.74891 5.86050 6.02444 6.25890 6.96904 7.78471 8.75816 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.047195 B = 0.004547 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.136484 B = 6156.173248 C = 6404.267265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.020 2.980 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.114 3.886 11 C -0.251 4.251 12 C -0.069 4.069 13 C -0.185 4.185 14 C -0.028 4.028 15 C -0.042 4.042 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.106 4.106 21 C -0.208 4.208 22 H 0.273 0.727 23 H 0.117 0.883 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -17.344 1.477 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.064 3.936 11 C -0.271 4.271 12 C -0.087 4.087 13 C -0.203 4.203 14 C -0.028 4.028 15 C -0.061 4.061 16 C -0.143 4.143 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.143 4.143 21 C -0.227 4.227 22 H 0.082 0.918 23 H 0.135 0.865 24 H 0.163 0.837 25 H 0.163 0.837 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.394 -17.175 1.456 18.384 hybrid contribution -0.156 1.380 -0.085 1.391 sum 6.238 -15.796 1.371 17.038 Atomic orbital electron populations 1.70183 1.08070 1.28866 1.48922 1.26618 0.96865 1.02768 0.95806 0.84638 0.77390 0.74164 0.79949 1.18102 1.19529 1.18147 1.21802 0.92530 0.81495 1.53412 0.88165 1.83938 1.35996 1.12605 1.81626 1.19915 0.91728 0.87824 0.94141 1.21279 0.92998 1.00266 1.12508 1.21162 1.00212 0.91411 0.95943 1.20902 0.93441 0.97847 1.08142 1.19765 0.93958 0.93554 0.95537 1.20163 0.98717 0.90139 0.97055 1.21555 1.01246 0.96359 0.95189 1.21545 1.00105 0.94679 0.99142 1.21532 1.01703 0.98356 0.93698 1.21546 1.00107 0.95405 0.98410 1.21554 1.01246 0.95169 0.96356 1.20313 0.99260 0.90511 1.12623 0.91835 0.86476 0.83662 0.83658 0.91874 0.90843 0.93263 0.92449 0.90786 0.90877 0.91320 0.92437 0.90763 0.93214 0.90840 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.81 13.67 21.62 0.30 -57.52 16 2 C -0.02 -1.36 5.49 84.84 0.47 -0.89 16 3 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.42 -24.97 9.49 67.92 0.64 -24.32 16 8 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -14.68 9.76 -22.74 -0.22 -14.90 16 10 C 0.11 5.94 6.65 22.58 0.15 6.09 16 11 C -0.25 -11.34 9.17 22.39 0.21 -11.14 16 12 C -0.07 -2.44 10.04 22.25 0.22 -2.21 16 13 C -0.19 -5.89 8.71 22.30 0.19 -5.69 16 14 C -0.03 -0.98 4.78 -19.88 -0.10 -1.08 16 15 C -0.04 -1.14 2.36 -11.54 -0.03 -1.17 16 16 C -0.11 -2.40 5.02 30.59 0.15 -2.25 16 17 C -0.12 -2.08 5.92 30.59 0.18 -1.90 16 18 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 19 C -0.12 -2.07 5.92 30.59 0.18 -1.88 16 20 C -0.11 -2.38 5.02 30.59 0.15 -2.23 16 21 C -0.21 -9.40 9.62 22.39 0.22 -9.19 16 22 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.12 5.35 5.64 -2.91 -0.02 5.34 16 24 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 25 H 0.15 3.52 7.09 -2.91 -0.02 3.50 16 26 H 0.06 1.84 7.87 -2.38 -0.02 1.82 16 27 H 0.07 1.52 7.38 -2.38 -0.02 1.50 16 28 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 1.51 7.38 -2.38 -0.02 1.50 16 37 H 0.10 4.73 7.94 -2.91 -0.02 4.71 16 Total: -1.00 -70.50 298.43 5.97 -64.53 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 1.04 Total: 21.69 kcal Atomic # 6 Polarization: -62.26 SS G_CDS: 2.83 Total: -59.43 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.30 Total: -57.52 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.22 Total: -14.90 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -70.50 5.97 -64.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.399 kcal (2) G-P(sol) polarization free energy of solvation -70.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds