Wall clock time and date at job start Mon Mar 30 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99580 * 2 1 4 4 H 1.48496 * 109.47369 * 269.99936 * 3 2 1 5 5 H 1.48503 * 109.47316 * 30.00084 * 3 2 1 6 6 H 1.48501 * 109.46867 * 149.99866 * 3 2 1 7 7 C 1.37872 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00076 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00143 * 0.02562 * 7 2 1 10 10 H 1.08990 * 110.01685 * 58.60767 * 9 7 2 11 11 C 1.54271 * 110.06915 * 297.19027 * 9 7 2 12 12 C 1.54887 * 104.19545 * 217.07853 * 11 9 7 13 13 C 1.54969 * 102.77593 * 37.92097 * 12 11 9 14 14 C 1.53868 * 110.03409 * 180.02562 * 9 7 2 15 15 H 1.09003 * 110.03331 * 238.66590 * 14 9 7 16 16 O 1.42903 * 110.03370 * 0.04494 * 14 9 7 17 17 C 1.42899 * 114.00342 * 209.31501 * 16 14 9 18 18 C 1.50701 * 109.47103 * 180.02562 * 17 16 14 19 19 C 1.38235 * 119.99808 * 89.99842 * 18 17 16 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.00069 * 0.09581 * 20 19 18 22 22 C 1.38234 * 119.99842 * 359.83724 * 21 20 19 23 23 C 1.38230 * 119.99865 * 269.97588 * 18 17 16 24 24 H 0.97000 * 120.00294 * 0.02562 * 1 2 3 25 25 H 1.08995 * 110.49120 * 335.76042 * 11 9 7 26 26 H 1.09004 * 110.47926 * 98.40917 * 11 9 7 27 27 H 1.08997 * 110.75776 * 156.25765 * 12 11 9 28 28 H 1.08993 * 110.76054 * 279.44982 * 12 11 9 29 29 H 1.08996 * 110.53431 * 203.42768 * 13 12 11 30 30 H 1.09006 * 110.47780 * 80.76223 * 13 12 11 31 31 H 1.08993 * 109.47528 * 59.99500 * 17 16 14 32 32 H 1.09001 * 109.46686 * 299.99411 * 17 16 14 33 33 H 1.08000 * 120.00616 * 359.70324 * 19 18 17 34 34 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99649 * 179.97438 * 21 20 19 36 36 H 1.08008 * 119.99453 * 180.11401 * 22 21 20 37 37 H 1.08001 * 120.00350 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6030 -2.5550 -0.8761 11 6 0.4125 -2.6275 1.2868 12 6 0.5036 -4.1301 1.6512 13 6 1.9675 -4.4833 1.2856 14 6 2.2396 -3.6784 -0.0015 15 1 2.0720 -4.3062 -0.8766 16 8 3.5830 -3.1911 0.0008 17 6 4.5184 -4.0623 -0.6378 18 6 5.8953 -3.4528 -0.5765 19 6 6.7248 -3.7256 0.4951 20 6 7.9880 -3.1669 0.5511 21 6 8.4209 -2.3339 -0.4635 22 6 7.5919 -2.0623 -1.5358 23 6 6.3289 -2.6214 -1.5921 24 1 -0.4850 0.8400 -0.0004 25 1 0.8386 -2.0156 2.0819 26 1 -0.6226 -2.3428 1.0980 27 1 0.3240 -4.2811 2.7156 28 1 -0.1974 -4.7152 1.0559 29 1 2.0670 -5.5520 1.0956 30 1 2.6450 -4.1716 2.0806 31 1 4.2298 -4.2049 -1.6791 32 1 4.5248 -5.0254 -0.1275 33 1 6.3844 -4.3717 1.2908 34 1 8.6359 -3.3797 1.3886 35 1 9.4077 -1.8971 -0.4196 36 1 7.9309 -1.4129 -2.3295 37 1 5.6811 -2.4088 -2.4297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260348737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:34 Heat of formation + Delta-G solvation = -33.563962 kcal Electronic energy + Delta-G solvation = -17740.085659 eV Core-core repulsion = 15060.657596 eV Total energy + Delta-G solvation = -2679.428062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.13263 -37.93882 -35.15221 -32.28547 -31.48019 -30.70836 -28.10767 -26.86073 -25.26370 -23.76719 -22.38148 -21.06485 -19.76536 -18.97094 -16.89711 -16.51885 -15.37554 -15.22827 -14.93216 -14.63054 -14.06604 -13.80912 -13.48030 -13.19919 -12.94192 -12.46113 -12.28970 -11.88140 -11.50361 -11.14136 -10.96665 -10.83212 -10.73931 -10.52597 -10.38472 -9.99180 -9.79135 -9.56402 -9.21847 -8.73061 -8.64680 -8.55950 -8.49788 -8.22433 -5.85588 -3.83168 1.49789 1.59769 3.40961 3.47094 3.54105 3.89032 4.58418 4.70985 5.02570 5.11224 5.22001 5.34488 5.44530 5.52230 5.64028 5.66520 5.71536 5.84509 5.87259 5.89756 6.13168 6.17494 6.24194 6.40881 6.56451 6.62336 6.66151 6.71892 6.82228 6.86903 6.91636 7.17880 7.20424 7.39850 7.70089 7.93958 8.14138 8.18571 8.69436 9.26363 9.80084 11.25461 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.007973 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.302424 B = 3511.086222 C = 4711.963067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.490 4.490 8 H 0.076 0.924 9 C 0.045 3.955 10 H 0.032 0.968 11 C -0.091 4.091 12 C -0.131 4.131 13 C -0.141 4.141 14 C 0.090 3.910 15 H 0.040 0.960 16 O -0.341 6.341 17 C 0.093 3.907 18 C -0.075 4.075 19 C -0.102 4.102 20 C -0.127 4.127 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.097 4.097 24 H 0.256 0.744 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.090 -8.543 -0.535 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.027 3.973 10 H 0.050 0.950 11 C -0.129 4.129 12 C -0.168 4.168 13 C -0.179 4.179 14 C 0.033 3.967 15 H 0.058 0.942 16 O -0.260 6.260 17 C 0.016 3.984 18 C -0.075 4.075 19 C -0.120 4.120 20 C -0.145 4.145 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.115 4.115 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.990 -8.238 -0.452 13.742 hybrid contribution 0.327 0.741 -0.073 0.813 sum 11.317 -7.497 -0.525 13.585 Atomic orbital electron populations 1.69980 1.05835 1.26067 1.52142 1.24978 0.94728 0.98886 0.95868 0.86669 0.80040 0.83882 0.77865 1.21019 1.21629 1.19909 1.21192 0.94079 0.89323 1.48288 0.90592 1.19410 0.91373 0.92079 0.94450 0.94993 1.22277 1.00514 0.90913 0.99243 1.22551 0.95155 0.99911 0.99215 1.22848 0.97955 0.97743 0.99371 1.22965 0.82942 0.96490 0.94352 0.94230 1.88303 1.16630 1.43358 1.77733 1.21282 0.87228 0.92833 0.97085 1.19746 0.94911 0.98016 0.94840 1.21050 0.93821 0.99903 0.97203 1.21079 0.96326 0.98313 0.98813 1.21100 0.99656 0.98730 0.94670 1.21120 0.94440 1.00171 0.98607 1.21127 0.95702 0.95711 0.98923 0.93445 0.92693 0.92403 0.93204 0.92891 0.93630 0.91319 0.93298 0.93757 0.86166 0.86334 0.86466 0.86221 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 12.43 55.43 0.69 -25.85 16 2 C 0.06 1.58 5.33 -17.82 -0.09 1.48 16 3 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.27 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.49 -13.87 8.08 -34.44 -0.28 -14.15 16 8 H 0.08 2.21 6.12 -52.48 -0.32 1.89 16 9 C 0.05 1.15 2.82 -90.65 -0.26 0.89 16 10 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 11 C -0.09 -2.17 5.44 -25.07 -0.14 -2.30 16 12 C -0.13 -2.48 6.91 -24.70 -0.17 -2.65 16 13 C -0.14 -2.62 6.56 -25.05 -0.16 -2.79 16 14 C 0.09 1.91 3.35 -25.64 -0.09 1.82 16 15 H 0.04 0.77 7.81 -51.93 -0.41 0.37 16 16 O -0.34 -7.37 7.61 -35.23 -0.27 -7.64 16 17 C 0.09 1.57 5.90 36.01 0.21 1.79 16 18 C -0.08 -1.22 5.51 -104.63 -0.58 -1.80 16 19 C -0.10 -1.49 9.70 -39.58 -0.38 -1.88 16 20 C -0.13 -1.66 10.05 -39.58 -0.40 -2.05 16 21 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 22 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 23 C -0.10 -1.50 9.70 -39.59 -0.38 -1.89 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.05 1.41 7.85 -51.93 -0.41 1.00 16 26 H 0.06 1.45 7.97 -51.93 -0.41 1.03 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 31 H 0.05 0.78 8.04 -51.93 -0.42 0.36 16 32 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -30.48 305.45 -9.25 -39.73 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.75 Total: -0.63 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -3.51 Total: -27.60 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.69 Total: -25.85 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.27 Total: -7.64 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.48 -9.25 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.170 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds