Wall clock time and date at job start Mon Mar 30 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99580 * 2 1 4 4 H 1.48496 * 109.47369 * 269.99936 * 3 2 1 5 5 H 1.48503 * 109.47316 * 30.00084 * 3 2 1 6 6 H 1.48501 * 109.46867 * 149.99866 * 3 2 1 7 7 C 1.37872 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00076 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00143 * 0.02562 * 7 2 1 10 10 H 1.08990 * 110.01685 * 58.60767 * 9 7 2 11 11 C 1.54271 * 110.06915 * 297.19027 * 9 7 2 12 12 C 1.54887 * 104.19545 * 217.07853 * 11 9 7 13 13 C 1.54969 * 102.77593 * 37.92097 * 12 11 9 14 14 C 1.53868 * 110.03409 * 180.02562 * 9 7 2 15 15 H 1.09003 * 110.03331 * 238.66590 * 14 9 7 16 16 O 1.42903 * 110.03370 * 0.04494 * 14 9 7 17 17 C 1.42899 * 114.00342 * 209.31501 * 16 14 9 18 18 C 1.50701 * 109.47103 * 180.02562 * 17 16 14 19 19 C 1.38235 * 119.99808 * 89.99842 * 18 17 16 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.00069 * 0.09581 * 20 19 18 22 22 C 1.38234 * 119.99842 * 359.83724 * 21 20 19 23 23 C 1.38230 * 119.99865 * 269.97588 * 18 17 16 24 24 H 0.97000 * 120.00294 * 0.02562 * 1 2 3 25 25 H 1.08995 * 110.49120 * 335.76042 * 11 9 7 26 26 H 1.09004 * 110.47926 * 98.40917 * 11 9 7 27 27 H 1.08997 * 110.75776 * 156.25765 * 12 11 9 28 28 H 1.08993 * 110.76054 * 279.44982 * 12 11 9 29 29 H 1.08996 * 110.53431 * 203.42768 * 13 12 11 30 30 H 1.09006 * 110.47780 * 80.76223 * 13 12 11 31 31 H 1.08993 * 109.47528 * 59.99500 * 17 16 14 32 32 H 1.09001 * 109.46686 * 299.99411 * 17 16 14 33 33 H 1.08000 * 120.00616 * 359.70324 * 19 18 17 34 34 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99649 * 179.97438 * 21 20 19 36 36 H 1.08008 * 119.99453 * 180.11401 * 22 21 20 37 37 H 1.08001 * 120.00350 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6030 -2.5550 -0.8761 11 6 0.4125 -2.6275 1.2868 12 6 0.5036 -4.1301 1.6512 13 6 1.9675 -4.4833 1.2856 14 6 2.2396 -3.6784 -0.0015 15 1 2.0720 -4.3062 -0.8766 16 8 3.5830 -3.1911 0.0008 17 6 4.5184 -4.0623 -0.6378 18 6 5.8953 -3.4528 -0.5765 19 6 6.7248 -3.7256 0.4951 20 6 7.9880 -3.1669 0.5511 21 6 8.4209 -2.3339 -0.4635 22 6 7.5919 -2.0623 -1.5358 23 6 6.3289 -2.6214 -1.5921 24 1 -0.4850 0.8400 -0.0004 25 1 0.8386 -2.0156 2.0819 26 1 -0.6226 -2.3428 1.0980 27 1 0.3240 -4.2811 2.7156 28 1 -0.1974 -4.7152 1.0559 29 1 2.0670 -5.5520 1.0956 30 1 2.6450 -4.1716 2.0806 31 1 4.2298 -4.2049 -1.6791 32 1 4.5248 -5.0254 -0.1275 33 1 6.3844 -4.3717 1.2908 34 1 8.6359 -3.3797 1.3886 35 1 9.4077 -1.8971 -0.4196 36 1 7.9309 -1.4129 -2.3295 37 1 5.6811 -2.4088 -2.4297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260348737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:34 Heat of formation + Delta-G solvation = -49.233068 kcal Electronic energy + Delta-G solvation = -17740.765122 eV Core-core repulsion = 15060.657596 eV Total energy + Delta-G solvation = -2680.107526 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33346 -39.46539 -36.76301 -34.38623 -32.66765 -31.76109 -30.01665 -28.45822 -26.61916 -25.79898 -23.44300 -22.19666 -21.38942 -20.81743 -18.66218 -17.76646 -16.90757 -16.85077 -16.40649 -16.12584 -15.76912 -15.30277 -14.87093 -14.30233 -14.27891 -14.19678 -13.62731 -13.45702 -13.16731 -12.86940 -12.80957 -12.45795 -12.30716 -11.93481 -11.77517 -11.62617 -11.58827 -11.37306 -11.07864 -10.63304 -10.43092 -10.12322 -9.79174 -9.69337 -8.05865 -6.08859 0.40174 0.52761 1.37987 1.38964 1.50599 2.47123 2.75016 3.25240 3.36421 3.93356 3.95483 4.06645 4.09438 4.17981 4.29637 4.35345 4.41064 4.46807 4.57094 4.70856 4.79624 4.93836 4.96313 5.05249 5.09090 5.11451 5.18535 5.27764 5.37086 5.55093 5.58250 5.61695 5.73412 5.75108 5.92938 5.98690 6.13773 6.38895 6.76882 7.05515 7.57317 9.04444 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.007973 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.302424 B = 3511.086222 C = 4711.963067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.064 0.936 9 C 0.032 3.968 10 H 0.001 0.999 11 C -0.086 4.086 12 C -0.119 4.119 13 C -0.130 4.130 14 C 0.092 3.908 15 H 0.054 0.946 16 O -0.373 6.373 17 C 0.092 3.908 18 C -0.102 4.102 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.121 4.121 24 H 0.256 0.744 25 H 0.027 0.973 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.023 -9.510 0.158 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.014 3.986 10 H 0.019 0.981 11 C -0.124 4.124 12 C -0.156 4.156 13 C -0.168 4.168 14 C 0.034 3.966 15 H 0.072 0.928 16 O -0.292 6.292 17 C 0.015 3.985 18 C -0.102 4.102 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.139 4.139 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.932 -9.215 0.236 15.881 hybrid contribution -0.208 1.049 -0.329 1.119 sum 12.724 -8.166 -0.093 15.119 Atomic orbital electron populations 1.70094 1.06949 1.26650 1.53144 1.25684 0.95546 1.01966 0.95935 0.85760 0.78721 0.80361 0.78031 1.20331 1.21021 1.19998 1.21449 0.93760 0.91020 1.47634 0.91786 1.19426 0.92250 0.93077 0.93855 0.98065 1.22049 0.98349 0.94404 0.97636 1.22487 0.96197 0.95937 1.00994 1.22769 0.97054 0.99478 0.97490 1.22820 0.82298 0.94883 0.96577 0.92835 1.88225 1.17073 1.45501 1.78427 1.21441 0.86780 0.93140 0.97090 1.19859 0.94922 0.99360 0.96094 1.21289 0.94511 1.00396 0.96988 1.21479 0.95977 0.97472 0.99687 1.21531 1.00749 0.97949 0.93792 1.21435 0.93803 1.00088 0.99704 1.21279 0.96891 0.96698 0.99078 0.93513 0.95438 0.94770 0.90935 0.91045 0.89760 0.91874 0.93125 0.91573 0.85099 0.83400 0.83297 0.84174 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 12.43 21.45 0.27 -56.00 16 2 C 0.01 0.32 5.33 84.65 0.45 0.77 16 3 Si 0.94 46.83 29.54 68.60 2.03 48.86 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.50 -29.12 8.08 25.60 0.21 -28.91 16 8 H 0.06 3.83 6.12 -2.91 -0.02 3.81 16 9 C 0.03 1.69 2.82 -10.82 -0.03 1.65 16 10 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 11 C -0.09 -4.17 5.44 31.67 0.17 -4.00 16 12 C -0.12 -4.28 6.91 31.91 0.22 -4.06 16 13 C -0.13 -4.52 6.56 31.68 0.21 -4.31 16 14 C 0.09 3.84 3.35 31.30 0.10 3.94 16 15 H 0.05 2.04 7.81 -2.39 -0.02 2.03 16 16 O -0.37 -16.09 7.61 -148.98 -1.13 -17.23 16 17 C 0.09 3.06 5.90 71.24 0.42 3.48 16 18 C -0.10 -3.28 5.51 -19.87 -0.11 -3.39 16 19 C -0.11 -3.16 9.70 22.27 0.22 -2.94 16 20 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 21 C -0.12 -2.76 10.05 22.27 0.22 -2.54 16 22 C -0.13 -3.41 10.05 22.27 0.22 -3.18 16 23 C -0.12 -3.76 9.70 22.27 0.22 -3.55 16 24 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.03 1.43 7.85 -2.39 -0.02 1.41 16 26 H 0.03 1.76 7.97 -2.38 -0.02 1.74 16 27 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.06 2.27 8.08 -2.38 -0.02 2.25 16 31 H 0.05 1.62 8.04 -2.39 -0.02 1.60 16 32 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 33 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -67.44 305.45 4.93 -62.51 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.02 Total: 11.66 kcal Atomic # 6 Polarization: -52.55 SS G_CDS: 2.75 Total: -49.80 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.27 Total: -56.00 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -1.13 Total: -17.23 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -67.44 4.93 -62.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.274 kcal (2) G-P(sol) polarization free energy of solvation -67.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds