Wall clock time and date at job start Mon Mar 30 2020 05:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.01635 * 300.05741 * 9 7 2 11 11 C 1.53875 * 110.03241 * 61.45446 * 9 7 2 12 12 C 1.54264 * 106.59533 * 119.28348 * 11 9 7 13 13 C 1.54883 * 104.19989 * 23.61067 * 12 11 9 14 14 C 1.54269 * 110.02773 * 178.62123 * 9 7 2 15 15 H 1.08999 * 110.49116 * 335.78205 * 14 9 7 16 16 O 1.42897 * 110.48667 * 98.43103 * 14 9 7 17 17 C 1.42904 * 113.99793 * 209.99808 * 16 14 9 18 18 C 1.50700 * 109.47105 * 179.97438 * 17 16 14 19 19 C 1.38236 * 119.99846 * 269.72693 * 18 17 16 20 20 C 1.38241 * 119.99700 * 179.78808 * 19 18 17 21 21 C 1.38234 * 119.99907 * 0.44141 * 20 19 18 22 22 C 1.38228 * 120.00304 * 359.80838 * 21 20 19 23 23 C 1.38233 * 120.00097 * 89.99610 * 18 17 16 24 24 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 25 25 H 1.08995 * 110.02811 * 238.56718 * 11 9 7 26 26 H 1.08998 * 110.02834 * 359.97438 * 11 9 7 27 27 H 1.09004 * 110.48243 * 142.29063 * 12 11 9 28 28 H 1.08997 * 110.48839 * 264.79463 * 12 11 9 29 29 H 1.09000 * 110.75753 * 80.36699 * 13 12 11 30 30 H 1.08999 * 110.75980 * 203.55537 * 13 12 11 31 31 H 1.08997 * 109.47027 * 299.99277 * 17 16 14 32 32 H 1.08995 * 109.47516 * 59.99802 * 17 16 14 33 33 H 1.07997 * 120.00297 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.99802 * 180.26842 * 20 19 18 35 35 H 1.08001 * 119.99653 * 179.83743 * 21 20 19 36 36 H 1.08000 * 120.00377 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.00108 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6199 -2.5655 0.8868 11 6 0.3897 -2.6105 -1.2697 12 6 0.8870 -3.8563 -2.0314 13 6 1.5493 -4.7309 -0.9381 14 6 2.2417 -3.6812 -0.0337 15 1 3.1917 -3.3704 -0.4684 16 8 2.4396 -4.2061 1.2806 17 6 3.7334 -4.7756 1.4902 18 6 3.8310 -5.2944 2.9017 19 6 4.2910 -4.4695 3.9111 20 6 4.3764 -4.9441 5.2066 21 6 4.0106 -6.2465 5.4911 22 6 3.5556 -7.0730 4.4809 23 6 3.4660 -6.5970 3.1861 24 1 -0.4850 -0.8401 0.0004 25 1 -0.6593 -2.7318 -0.9999 26 1 0.5164 -1.7203 -1.8859 27 1 0.0493 -4.3845 -2.4869 28 1 1.6164 -3.5736 -2.7904 29 1 0.7963 -5.2860 -0.3787 30 1 2.2808 -5.4096 -1.3767 31 1 3.8869 -5.5963 0.7897 32 1 4.4961 -4.0136 1.3301 33 1 4.5807 -3.4533 3.6881 34 1 4.7316 -4.2983 5.9960 35 1 4.0799 -6.6181 6.5028 36 1 3.2694 -8.0904 4.7032 37 1 3.1104 -7.2428 2.3968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260348740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:36 Heat of formation + Delta-G solvation = -42.868208 kcal Electronic energy + Delta-G solvation = -17492.987449 eV Core-core repulsion = 14813.155924 eV Total energy + Delta-G solvation = -2679.831525 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.24686 -38.08214 -35.55416 -32.57060 -31.60735 -30.81869 -27.83992 -27.03272 -25.49415 -23.57228 -22.48934 -21.17676 -20.00684 -19.19864 -17.10992 -16.59591 -16.24526 -15.34337 -15.18245 -14.14002 -14.05756 -13.72438 -13.65008 -13.30966 -13.00690 -12.82838 -12.55488 -11.96517 -11.54742 -11.34706 -11.08793 -10.91090 -10.72080 -10.58940 -10.31484 -10.21899 -10.06913 -9.80510 -9.46384 -8.84692 -8.77400 -8.69817 -8.34977 -8.25900 -6.28809 -3.99783 1.37660 1.48403 3.45447 3.49419 3.62203 3.76658 4.50120 4.58464 4.92073 5.00582 5.10746 5.23994 5.38912 5.41701 5.51560 5.55903 5.57651 5.73108 5.77732 5.78293 6.06261 6.12691 6.13468 6.29045 6.35239 6.51188 6.55624 6.57521 6.63502 6.74336 6.76591 6.97218 7.06653 7.11373 7.40240 7.53893 8.09324 8.29600 8.47920 8.93987 9.71448 11.10256 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.006064 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.184927 B = 4616.142078 C = 5556.506315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.018 3.982 3 Si 1.071 2.929 4 H -0.291 1.291 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.589 4.589 8 H 0.047 0.953 9 C 0.035 3.965 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.119 4.119 13 C -0.146 4.146 14 C 0.096 3.904 15 H 0.060 0.940 16 O -0.368 6.368 17 C 0.100 3.900 18 C -0.079 4.079 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.102 4.102 24 H 0.273 0.727 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -12.145 4.751 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.186 4.186 3 Si 0.900 3.100 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.628 4.628 8 H 0.065 0.935 9 C 0.017 3.983 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.157 4.157 13 C -0.184 4.184 14 C 0.039 3.961 15 H 0.078 0.922 16 O -0.288 6.288 17 C 0.024 3.976 18 C -0.079 4.079 19 C -0.115 4.115 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.120 4.120 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.378 -10.480 4.888 13.717 hybrid contribution 0.348 -1.705 -0.191 1.750 sum 7.725 -12.185 4.696 15.172 Atomic orbital electron populations 1.70706 1.06805 1.31126 1.46433 1.25732 0.96588 1.02378 0.93870 0.83517 0.74447 0.75106 0.76918 1.21668 1.21427 1.21395 1.22044 0.93812 0.91323 1.55591 0.93483 1.19460 0.92951 0.92140 0.93764 0.95261 1.22331 0.97912 0.96282 0.98524 1.22251 0.99114 0.97193 0.97160 1.22968 0.99701 0.97891 0.97805 1.23278 0.98920 0.93159 0.80751 0.92244 1.88014 1.30398 1.77461 1.32908 1.21255 0.87646 0.96717 0.92022 1.19765 0.98952 0.93936 0.95257 1.21168 0.98302 0.99521 0.92516 1.21141 1.00662 0.95882 0.96545 1.21127 0.99654 0.94273 0.98983 1.21092 1.00627 0.99759 0.93044 1.21062 0.98753 0.95415 0.96806 0.91529 0.94181 0.91374 0.93068 0.92400 0.91551 0.93152 0.93420 0.92785 0.85675 0.86065 0.86328 0.86230 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.65 13.26 55.43 0.73 -26.92 16 2 C 0.02 0.53 5.07 -17.82 -0.09 0.44 16 3 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.59 -16.64 8.34 -34.44 -0.29 -16.93 16 8 H 0.05 1.33 7.55 -52.48 -0.40 0.93 16 9 C 0.04 0.91 2.28 -90.65 -0.21 0.70 16 10 H 0.03 0.84 7.94 -51.93 -0.41 0.43 16 11 C -0.11 -2.63 4.87 -25.61 -0.12 -2.75 16 12 C -0.12 -2.28 6.83 -25.08 -0.17 -2.45 16 13 C -0.15 -2.71 6.62 -24.74 -0.16 -2.87 16 14 C 0.10 2.09 2.87 -25.07 -0.07 2.02 16 15 H 0.06 1.29 7.36 -51.93 -0.38 0.91 16 16 O -0.37 -7.85 10.04 -35.23 -0.35 -8.20 16 17 C 0.10 1.70 5.90 36.01 0.21 1.91 16 18 C -0.08 -1.24 5.51 -104.62 -0.58 -1.81 16 19 C -0.10 -1.44 9.70 -39.58 -0.38 -1.82 16 20 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 21 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 22 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 23 C -0.10 -1.41 9.70 -39.58 -0.38 -1.79 16 24 H 0.27 8.21 5.95 -40.82 -0.24 7.97 16 25 H 0.04 0.92 7.87 -51.93 -0.41 0.52 16 26 H 0.07 1.75 7.17 -51.93 -0.37 1.38 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.05 0.90 8.05 -51.93 -0.42 0.48 16 33 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -31.05 305.18 -9.20 -40.25 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.65 Total: 0.97 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -3.44 Total: -31.10 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.73 Total: -26.92 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.35 Total: -8.20 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.05 -9.20 -40.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.622 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds