Wall clock time and date at job start Mon Mar 30 2020 05:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.01635 * 300.05741 * 9 7 2 11 11 C 1.53875 * 110.03241 * 61.45446 * 9 7 2 12 12 C 1.54264 * 106.59533 * 119.28348 * 11 9 7 13 13 C 1.54883 * 104.19989 * 23.61067 * 12 11 9 14 14 C 1.54269 * 110.02773 * 178.62123 * 9 7 2 15 15 H 1.08999 * 110.49116 * 335.78205 * 14 9 7 16 16 O 1.42897 * 110.48667 * 98.43103 * 14 9 7 17 17 C 1.42904 * 113.99793 * 209.99808 * 16 14 9 18 18 C 1.50700 * 109.47105 * 179.97438 * 17 16 14 19 19 C 1.38236 * 119.99846 * 269.72693 * 18 17 16 20 20 C 1.38241 * 119.99700 * 179.78808 * 19 18 17 21 21 C 1.38234 * 119.99907 * 0.44141 * 20 19 18 22 22 C 1.38228 * 120.00304 * 359.80838 * 21 20 19 23 23 C 1.38233 * 120.00097 * 89.99610 * 18 17 16 24 24 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 25 25 H 1.08995 * 110.02811 * 238.56718 * 11 9 7 26 26 H 1.08998 * 110.02834 * 359.97438 * 11 9 7 27 27 H 1.09004 * 110.48243 * 142.29063 * 12 11 9 28 28 H 1.08997 * 110.48839 * 264.79463 * 12 11 9 29 29 H 1.09000 * 110.75753 * 80.36699 * 13 12 11 30 30 H 1.08999 * 110.75980 * 203.55537 * 13 12 11 31 31 H 1.08997 * 109.47027 * 299.99277 * 17 16 14 32 32 H 1.08995 * 109.47516 * 59.99802 * 17 16 14 33 33 H 1.07997 * 120.00297 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.99802 * 180.26842 * 20 19 18 35 35 H 1.08001 * 119.99653 * 179.83743 * 21 20 19 36 36 H 1.08000 * 120.00377 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.00108 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6199 -2.5655 0.8868 11 6 0.3897 -2.6105 -1.2697 12 6 0.8870 -3.8563 -2.0314 13 6 1.5493 -4.7309 -0.9381 14 6 2.2417 -3.6812 -0.0337 15 1 3.1917 -3.3704 -0.4684 16 8 2.4396 -4.2061 1.2806 17 6 3.7334 -4.7756 1.4902 18 6 3.8310 -5.2944 2.9017 19 6 4.2910 -4.4695 3.9111 20 6 4.3764 -4.9441 5.2066 21 6 4.0106 -6.2465 5.4911 22 6 3.5556 -7.0730 4.4809 23 6 3.4660 -6.5970 3.1861 24 1 -0.4850 -0.8401 0.0004 25 1 -0.6593 -2.7318 -0.9999 26 1 0.5164 -1.7203 -1.8859 27 1 0.0493 -4.3845 -2.4869 28 1 1.6164 -3.5736 -2.7904 29 1 0.7963 -5.2860 -0.3787 30 1 2.2808 -5.4096 -1.3767 31 1 3.8869 -5.5963 0.7897 32 1 4.4961 -4.0136 1.3301 33 1 4.5807 -3.4533 3.6881 34 1 4.7316 -4.2983 5.9960 35 1 4.0799 -6.6181 6.5028 36 1 3.2694 -8.0904 4.7032 37 1 3.1104 -7.2428 2.3968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260348740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:36 Heat of formation + Delta-G solvation = -59.537560 kcal Electronic energy + Delta-G solvation = -17493.710286 eV Core-core repulsion = 14813.155924 eV Total energy + Delta-G solvation = -2680.554362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43276 -39.62635 -37.20579 -34.61572 -32.76875 -31.81424 -29.75409 -28.67223 -26.87714 -25.61645 -23.49421 -22.26996 -21.61878 -21.11257 -19.04974 -17.98309 -17.65043 -16.57007 -16.35061 -15.86624 -15.56562 -15.42779 -15.19421 -14.70389 -14.31233 -14.26102 -13.79547 -13.53677 -13.15558 -12.88094 -12.85209 -12.57158 -12.16873 -11.97966 -11.89606 -11.84656 -11.78202 -11.47322 -11.33889 -10.65940 -10.44478 -10.22774 -9.84573 -9.76914 -8.59495 -6.31127 0.33050 0.47509 1.50244 1.59904 1.75498 2.55374 2.64574 3.15192 3.25840 3.78421 3.85642 3.92402 3.94606 4.11838 4.18073 4.26953 4.31621 4.35730 4.47204 4.63600 4.64645 4.74078 4.80082 4.85980 4.96315 5.04688 5.06892 5.13517 5.22595 5.31667 5.43862 5.52879 5.57350 5.59182 5.67968 6.06509 6.08473 6.21848 6.47266 6.66006 7.48847 8.79734 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.006064 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.184927 B = 4616.142078 C = 5556.506315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.032 4.032 3 Si 1.116 2.884 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.602 4.602 8 H 0.041 0.959 9 C 0.024 3.976 10 H -0.015 1.015 11 C -0.106 4.106 12 C -0.110 4.110 13 C -0.133 4.133 14 C 0.100 3.900 15 H 0.055 0.945 16 O -0.395 6.395 17 C 0.099 3.901 18 C -0.107 4.107 19 C -0.123 4.123 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.112 4.112 24 H 0.261 0.739 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.808 -13.974 5.025 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.230 4.230 3 Si 0.939 3.061 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.640 4.640 8 H 0.059 0.941 9 C 0.005 3.995 10 H 0.003 0.997 11 C -0.145 4.145 12 C -0.147 4.147 13 C -0.170 4.170 14 C 0.043 3.957 15 H 0.073 0.927 16 O -0.315 6.315 17 C 0.023 3.977 18 C -0.107 4.107 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.478 -12.335 5.158 15.831 hybrid contribution 0.024 -1.184 -0.161 1.195 sum 8.502 -13.519 4.996 16.734 Atomic orbital electron populations 1.70822 1.07751 1.30476 1.48506 1.27183 0.96675 1.06171 0.92968 0.82944 0.74213 0.71509 0.77473 1.19826 1.20186 1.20807 1.22389 0.93739 0.92891 1.54945 0.94079 1.19487 0.93578 0.93394 0.92997 0.99662 1.22127 0.97218 0.97586 0.97560 1.22223 1.00403 0.95041 0.97076 1.22886 1.00155 0.97268 0.96716 1.23069 0.97800 0.93004 0.81867 0.92670 1.87967 1.32924 1.77884 1.32695 1.21423 0.85416 0.97003 0.93892 1.19812 1.01039 0.95207 0.94623 1.21282 0.99651 0.99318 0.93824 1.21442 1.00295 0.96988 0.96016 1.21570 0.97942 0.93554 1.00589 1.21503 0.99429 1.01243 0.92218 1.21294 0.98678 0.94767 0.98268 0.92823 0.95009 0.94284 0.90125 0.91240 0.91371 0.89522 0.91137 0.93514 0.86840 0.83996 0.83007 0.83110 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.26 21.45 0.28 -58.43 16 2 C -0.03 -1.88 5.07 84.65 0.43 -1.45 16 3 Si 1.12 51.81 29.90 68.60 2.05 53.87 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.60 -35.13 8.34 25.60 0.21 -34.92 16 8 H 0.04 2.38 7.55 -2.91 -0.02 2.36 16 9 C 0.02 1.28 2.28 -10.81 -0.02 1.26 16 10 H -0.01 -0.90 7.94 -2.39 -0.02 -0.92 16 11 C -0.11 -5.11 4.87 31.32 0.15 -4.96 16 12 C -0.11 -3.99 6.83 31.67 0.22 -3.77 16 13 C -0.13 -4.65 6.62 31.88 0.21 -4.44 16 14 C 0.10 4.37 2.87 31.67 0.09 4.46 16 15 H 0.06 2.42 7.36 -2.39 -0.02 2.40 16 16 O -0.39 -17.11 10.04 -148.98 -1.50 -18.61 16 17 C 0.10 3.35 5.90 71.24 0.42 3.77 16 18 C -0.11 -3.32 5.51 -19.87 -0.11 -3.43 16 19 C -0.12 -3.68 9.70 22.27 0.22 -3.47 16 20 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 21 C -0.12 -2.43 10.05 22.27 0.22 -2.20 16 22 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 23 C -0.11 -2.91 9.70 22.27 0.22 -2.69 16 24 H 0.26 16.52 5.95 -92.71 -0.55 15.97 16 25 H 0.03 1.52 7.87 -2.39 -0.02 1.50 16 26 H 0.04 2.06 7.17 -2.39 -0.02 2.04 16 27 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 2.02 8.09 -2.39 -0.02 2.00 16 32 H 0.05 1.60 8.05 -2.39 -0.02 1.58 16 33 H 0.11 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -69.95 305.18 4.78 -65.16 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.24 Total: 15.18 kcal Atomic # 6 Polarization: -59.88 SS G_CDS: 2.70 Total: -57.17 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.28 Total: -58.43 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -1.50 Total: -18.61 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.87 kcal Total: -69.95 4.78 -65.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.625 kcal (2) G-P(sol) polarization free energy of solvation -69.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds