Wall clock time and date at job start Mon Mar 30 2020 05:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 H 1.09000 * 110.43544 * 61.09086 * 9 7 2 11 11 C 1.54257 * 110.48778 * 298.54323 * 9 7 2 12 12 C 1.53872 * 106.60145 * 217.71544 * 11 9 7 13 13 C 1.54268 * 106.59710 * 359.97438 * 12 11 9 14 14 C 1.54887 * 104.19466 * 23.61200 * 13 12 11 15 15 H 1.08995 * 110.75650 * 80.37387 * 14 13 12 16 16 O 1.42900 * 110.75489 * 203.74225 * 14 13 12 17 17 C 1.42894 * 113.99951 * 263.32448 * 16 14 13 18 18 C 1.50701 * 109.47093 * 180.02562 * 17 16 14 19 19 C 1.38238 * 119.99972 * 269.73180 * 18 17 16 20 20 C 1.38238 * 119.99669 * 179.74404 * 19 18 17 21 21 C 1.38234 * 120.00097 * 0.55324 * 20 19 18 22 22 C 1.38232 * 119.99989 * 359.69720 * 21 20 19 23 23 C 1.38234 * 120.00091 * 90.00291 * 18 17 16 24 24 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 25 25 H 1.09003 * 110.03729 * 337.00152 * 11 9 7 26 26 H 1.09005 * 110.03104 * 98.42991 * 11 9 7 27 27 H 1.08999 * 110.03314 * 119.28750 * 12 11 9 28 28 H 1.09005 * 110.03316 * 240.66812 * 12 11 9 29 29 H 1.08994 * 110.48515 * 142.28971 * 13 12 11 30 30 H 1.08997 * 110.48747 * 264.80199 * 13 12 11 31 31 H 1.08991 * 109.47579 * 300.00272 * 17 16 14 32 32 H 1.09000 * 109.46969 * 60.00414 * 17 16 14 33 33 H 1.08001 * 120.00121 * 359.97438 * 19 18 17 34 34 H 1.07999 * 119.99778 * 180.26854 * 20 19 18 35 35 H 1.08004 * 120.00124 * 179.72740 * 21 20 19 36 36 H 1.08000 * 119.99969 * 180.02562 * 22 21 20 37 37 H 1.08000 * 119.99595 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 1 3.8924 -0.7006 0.8930 11 6 4.0509 -0.5034 -1.2705 12 6 5.2973 -1.2941 -1.7053 13 6 5.4722 -2.4374 -0.6845 14 6 4.0539 -2.6416 -0.0963 15 1 3.4396 -3.2406 -0.7684 16 8 4.1244 -3.2425 1.1983 17 6 3.9458 -4.6602 1.1915 18 6 4.0380 -5.1849 2.6012 19 6 5.2601 -5.5788 3.1135 20 6 5.3455 -6.0551 4.4084 21 6 4.2072 -6.1483 5.1871 22 6 2.9844 -5.7592 4.6731 23 6 2.8998 -5.2775 3.3801 24 1 -0.4850 0.8401 0.0004 25 1 3.2983 -0.5299 -2.0586 26 1 4.3223 0.5284 -1.0474 27 1 5.1495 -1.7043 -2.7043 28 1 6.1735 -0.6457 -1.6941 29 1 5.8128 -3.3449 -1.1828 30 1 6.1734 -2.1465 0.0976 31 1 2.9666 -4.9011 0.7779 32 1 4.7217 -5.1212 0.5804 33 1 6.1486 -5.5109 2.5033 34 1 6.3009 -6.3588 4.8101 35 1 4.2732 -6.5245 6.1974 36 1 2.0951 -5.8316 5.2816 37 1 1.9444 -4.9742 2.9782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260348746.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:37 Heat of formation + Delta-G solvation = -51.034734 kcal Electronic energy + Delta-G solvation = -17515.195947 eV Core-core repulsion = 14835.010295 eV Total energy + Delta-G solvation = -2680.185652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37938 -39.55102 -37.06268 -34.55850 -32.74382 -31.78491 -30.74061 -28.70546 -26.79055 -25.43381 -23.46445 -22.24716 -21.48233 -21.11455 -18.80001 -17.82140 -17.67110 -16.86999 -16.46897 -16.17067 -15.53939 -15.24483 -15.12908 -14.61476 -14.28096 -14.22110 -14.02350 -13.69786 -13.26589 -12.98893 -12.90500 -12.50046 -12.28956 -12.03374 -11.83495 -11.77449 -11.59823 -11.46797 -11.23192 -10.97996 -10.73684 -10.19048 -9.81730 -9.73831 -8.29836 -6.32198 0.36156 0.50360 1.30373 1.34985 1.45279 2.33738 2.66993 3.04563 3.25100 3.81525 3.88847 3.95304 3.97573 4.15098 4.23586 4.29607 4.35476 4.40049 4.50613 4.65353 4.67442 4.77437 4.86003 4.90058 4.97380 5.08084 5.11111 5.16410 5.21384 5.31043 5.40568 5.55767 5.60178 5.60439 5.71345 5.71830 6.11295 6.28930 6.50754 6.71725 7.31917 8.87351 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024350 B = 0.006112 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.597975 B = 4579.734936 C = 5318.968249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.012 3.988 3 Si 0.943 3.057 4 H -0.258 1.258 5 H -0.295 1.295 6 H -0.251 1.251 7 C -0.508 4.508 8 H 0.027 0.973 9 C 0.008 3.992 10 H 0.023 0.977 11 C -0.134 4.134 12 C -0.111 4.111 13 C -0.133 4.133 14 C 0.097 3.903 15 H 0.054 0.946 16 O -0.390 6.390 17 C 0.100 3.900 18 C -0.105 4.105 19 C -0.109 4.109 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.131 4.131 23 C -0.124 4.124 24 H 0.265 0.735 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.139 0.861 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.875 -10.823 4.510 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.185 4.185 3 Si 0.768 3.232 4 H -0.182 1.182 5 H -0.222 1.222 6 H -0.176 1.176 7 C -0.546 4.546 8 H 0.045 0.955 9 C -0.011 4.011 10 H 0.041 0.959 11 C -0.171 4.171 12 C -0.148 4.148 13 C -0.171 4.171 14 C 0.039 3.961 15 H 0.072 0.928 16 O -0.309 6.309 17 C 0.024 3.976 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.143 4.143 21 C -0.136 4.136 22 C -0.149 4.149 23 C -0.142 4.142 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.157 0.843 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.759 -10.613 4.656 17.990 hybrid contribution -0.830 0.808 -0.276 1.190 sum 12.929 -9.805 4.380 16.808 Atomic orbital electron populations 1.70060 1.08169 1.27907 1.53161 1.25853 0.95413 1.02951 0.94268 0.85901 0.79081 0.78722 0.79469 1.18249 1.22177 1.17557 1.21234 0.91175 0.92681 1.49523 0.95467 1.19983 0.93610 0.93035 0.94424 0.95924 1.22466 0.97801 0.98543 0.98338 1.22016 0.97119 0.96802 0.98911 1.22752 0.96127 0.99425 0.98794 1.23134 0.95796 0.93919 0.83231 0.92808 1.87942 1.93045 1.19980 1.29973 1.21397 1.00217 0.81931 0.94082 1.19811 0.94762 1.00323 0.95658 1.21297 0.96531 0.98124 0.96731 1.21512 0.99893 0.99329 0.93557 1.21558 0.92120 0.98981 1.00971 1.21414 0.99465 0.99192 0.94819 1.21260 0.98213 0.99266 0.95484 0.92638 0.92766 0.93256 0.90487 0.90090 0.89748 0.90929 0.94158 0.90777 0.84525 0.82943 0.83048 0.84342 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 2 C 0.01 0.70 5.46 84.66 0.46 1.16 16 3 Si 0.94 46.14 24.67 68.60 1.69 47.83 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.25 -11.67 6.36 99.48 0.63 -11.04 16 7 C -0.51 -30.26 8.98 25.60 0.23 -30.03 16 8 H 0.03 1.80 8.02 -2.91 -0.02 1.77 16 9 C 0.01 0.41 2.02 -10.47 -0.02 0.39 16 10 H 0.02 1.18 7.31 -2.39 -0.02 1.16 16 11 C -0.13 -5.53 4.65 31.31 0.15 -5.39 16 12 C -0.11 -3.44 6.80 31.32 0.21 -3.22 16 13 C -0.13 -4.18 6.55 31.67 0.21 -3.98 16 14 C 0.10 3.99 2.78 31.88 0.09 4.08 16 15 H 0.05 2.28 7.74 -2.39 -0.02 2.27 16 16 O -0.39 -16.37 10.11 -148.98 -1.51 -17.87 16 17 C 0.10 3.40 5.90 71.24 0.42 3.82 16 18 C -0.11 -3.32 5.51 -19.87 -0.11 -3.43 16 19 C -0.11 -2.77 9.70 22.27 0.22 -2.55 16 20 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 21 C -0.12 -2.48 10.05 22.27 0.22 -2.25 16 22 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 23 C -0.12 -3.92 9.70 22.27 0.22 -3.70 16 24 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 25 H 0.05 2.39 7.82 -2.39 -0.02 2.37 16 26 H 0.05 1.99 5.73 -2.38 -0.01 1.97 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.04 1.44 8.06 -2.39 -0.02 1.43 16 32 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 33 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 37 H 0.11 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -71.23 301.44 4.18 -67.05 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.95 Total: 14.59 kcal Atomic # 6 Polarization: -53.33 SS G_CDS: 2.74 Total: -50.60 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.30 Total: -61.01 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -1.51 Total: -17.87 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.69 Total: 47.83 kcal Total: -71.23 4.18 -67.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348746.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.018 kcal (2) G-P(sol) polarization free energy of solvation -71.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds