Wall clock time and date at job start Mon Mar 30 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35890 * 117.00139 * 2 1 4 4 C 1.38762 * 120.05549 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94193 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05977 * 0.02609 * 5 4 3 7 7 C 1.50692 * 119.94620 * 179.97438 * 6 5 4 8 8 C 1.38250 * 120.10952 * 359.97438 * 6 5 4 9 9 C 1.50702 * 119.96782 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47446 * 354.47210 * 9 8 6 11 11 C 1.50705 * 109.46848 * 234.47291 * 9 8 6 12 12 H 1.08004 * 120.00110 * 359.97438 * 11 9 8 13 13 C 1.37876 * 120.00073 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99668 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00079 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47094 * 89.99442 * 15 13 11 17 17 H 1.48497 * 109.47320 * 209.99806 * 15 13 11 18 18 H 1.48500 * 109.47101 * 329.99754 * 15 13 11 19 19 C 1.52998 * 109.47083 * 114.47524 * 9 8 6 20 20 C 1.52994 * 117.51836 * 231.28295 * 19 9 8 21 21 C 1.52997 * 60.00367 * 107.47854 * 20 19 9 22 22 C 1.38163 * 120.05463 * 0.23519 * 8 6 5 23 23 H 1.08994 * 109.46950 * 300.00008 * 1 2 3 24 24 H 1.09001 * 109.47000 * 60.00216 * 1 2 3 25 25 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.02810 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.96855 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47412 * 264.56617 * 7 6 5 29 29 H 1.09003 * 109.47147 * 24.56622 * 7 6 5 30 30 H 1.09003 * 109.47055 * 144.55975 * 7 6 5 31 31 H 0.97006 * 119.99840 * 180.02562 * 14 13 11 32 32 H 1.09006 * 115.54866 * 85.57668 * 19 9 8 33 33 H 1.08999 * 117.49982 * 214.97095 * 20 19 9 34 34 H 1.09005 * 117.49737 * 359.97438 * 20 19 9 35 35 H 1.08998 * 117.49996 * 252.51165 * 21 20 19 36 36 H 1.09003 * 117.49898 * 107.48864 * 21 20 19 37 37 H 1.07998 * 120.02533 * 179.74256 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9861 5.0184 -0.0028 8 6 4.0560 2.5170 -0.0011 9 6 5.5609 2.5981 -0.0023 10 1 5.8686 3.6389 -0.1025 11 6 6.1060 1.7996 -1.1583 12 1 5.4304 1.2846 -1.8252 13 6 7.4674 1.7258 -1.3640 14 7 8.2900 2.3525 -0.5517 15 14 8.1431 0.7355 -2.7965 16 1 8.2606 1.6098 -3.9910 17 1 9.4820 0.2008 -2.4408 18 1 7.2238 -0.3915 -3.0965 19 6 6.1033 2.0301 1.3107 20 6 7.0948 2.8900 2.0969 21 6 5.6645 2.7099 2.6093 22 6 3.4311 1.2848 -0.0049 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2129 2.3204 -0.0014 27 1 1.3341 4.5113 -0.0019 28 1 4.2375 5.2973 -1.0261 29 1 3.3185 5.7668 0.4242 30 1 4.8973 4.9624 0.5928 31 1 9.2478 2.3009 -0.6967 32 1 6.2468 0.9497 1.3318 33 1 7.8908 2.3755 2.6352 34 1 7.3612 3.8607 1.6785 35 1 4.9897 3.5621 2.5281 36 1 5.5194 2.0768 3.4847 37 1 4.0207 0.3799 -0.0087 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260358010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:35 Heat of formation + Delta-G solvation = 0.418977 kcal Electronic energy + Delta-G solvation = -18041.592672 eV Core-core repulsion = 15363.638221 eV Total energy + Delta-G solvation = -2677.954451 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.69161 -37.78852 -35.91716 -32.69147 -31.50488 -31.01738 -28.08885 -26.65624 -25.34496 -23.50100 -21.63987 -21.17032 -20.25962 -18.93099 -17.11448 -16.57933 -15.57406 -15.36371 -14.64956 -14.53096 -14.17626 -13.67760 -13.25818 -13.16929 -12.70199 -12.57524 -12.01865 -11.80863 -11.73283 -11.38799 -10.96489 -10.92717 -10.73912 -10.50384 -10.39086 -10.30828 -9.93076 -9.74954 -9.62016 -8.71720 -8.64774 -8.26558 -7.91462 -7.37560 -5.97217 -4.03177 2.09350 2.11462 3.32448 3.39457 3.43921 3.70028 4.40342 4.52549 5.13165 5.17951 5.29963 5.33039 5.38233 5.45701 5.59282 5.72600 5.88575 5.96220 6.05528 6.20010 6.26883 6.34258 6.40048 6.46384 6.56157 6.63885 6.85995 6.93361 6.98398 7.05794 7.16107 7.28224 7.33922 7.51656 7.61065 7.84650 7.95843 8.04126 8.39630 8.98954 9.60544 11.08659 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.008202 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.217928 B = 3412.920042 C = 4009.686124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.322 6.322 3 C 0.109 3.891 4 C -0.230 4.230 5 C -0.090 4.090 6 C -0.131 4.131 7 C -0.105 4.105 8 C 0.011 3.989 9 C 0.100 3.900 10 H 0.048 0.952 11 C -0.514 4.514 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.875 5.875 15 Si 0.887 3.113 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.080 4.080 20 C -0.137 4.137 21 C -0.227 4.227 22 C -0.132 4.132 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.259 0.741 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 0.965 2.858 11.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.065 3.935 4 C -0.249 4.249 5 C -0.108 4.108 6 C -0.132 4.132 7 C -0.162 4.162 8 C 0.011 3.989 9 C 0.082 3.918 10 H 0.066 0.934 11 C -0.552 4.552 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.512 5.512 15 Si 0.715 3.285 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.099 4.099 20 C -0.174 4.174 21 C -0.264 4.264 22 C -0.151 4.151 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.680 0.809 2.895 11.095 hybrid contribution 0.151 -0.493 -0.780 0.935 sum -10.529 0.316 2.115 10.744 Atomic orbital electron populations 1.22908 0.79657 1.02986 1.00838 1.86054 1.20346 1.27793 1.89400 1.19087 0.92542 0.83469 0.98420 1.20902 0.98800 0.92591 1.12572 1.20625 0.93956 0.96280 0.99944 1.19740 0.92975 0.95617 1.04829 1.20712 1.00253 0.93066 1.02150 1.20198 0.98078 0.90365 0.90287 1.17639 0.83916 0.98078 0.92160 0.93441 1.21043 0.91530 1.31528 1.11098 0.92353 1.24935 0.97070 0.95495 0.95995 1.70023 1.02731 1.42026 1.36388 0.86670 0.78316 0.80586 0.82914 1.20797 1.21336 1.19906 1.22173 1.00389 0.97094 0.90214 1.22429 0.90197 1.01959 1.02791 1.23074 0.99672 1.04086 0.99575 1.20358 0.90028 0.99340 1.05357 0.93214 0.93198 0.89002 0.86785 0.87019 0.91757 0.93121 0.90968 0.93167 0.89972 0.91206 0.89643 0.90395 0.91154 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.37 16 2 O -0.32 -5.54 10.50 -19.39 -0.20 -5.75 16 3 C 0.11 2.06 6.69 -39.21 -0.26 1.79 16 4 C -0.23 -3.85 9.04 -39.43 -0.36 -4.21 16 5 C -0.09 -1.53 9.67 -39.61 -0.38 -1.91 16 6 C -0.13 -2.52 5.88 -104.60 -0.62 -3.14 16 7 C -0.11 -1.81 9.15 36.00 0.33 -1.48 16 8 C 0.01 0.24 4.40 -104.64 -0.46 -0.22 16 9 C 0.10 2.40 1.83 -92.92 -0.17 2.23 16 10 H 0.05 1.20 5.46 -51.93 -0.28 0.92 16 11 C -0.51 -13.71 8.06 -34.44 -0.28 -13.99 16 12 H 0.06 1.59 7.43 -52.48 -0.39 1.20 16 13 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 14 N -0.87 -23.84 11.43 55.43 0.63 -23.21 16 15 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.08 -1.85 3.99 -90.62 -0.36 -2.21 16 20 C -0.14 -2.97 9.04 -26.74 -0.24 -3.22 16 21 C -0.23 -4.56 9.87 -26.73 -0.26 -4.82 16 22 C -0.13 -2.82 8.70 -39.43 -0.34 -3.16 16 23 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 24 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.11 1.57 6.30 -52.49 -0.33 1.23 16 27 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 30 H 0.07 1.32 6.48 -51.93 -0.34 0.98 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.08 2.02 8.11 -51.93 -0.42 1.60 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.09 1.93 8.05 -51.93 -0.42 1.51 16 35 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.13 2.88 7.90 -52.49 -0.41 2.46 16 LS Contribution 304.38 15.07 4.59 4.59 Total: -1.00 -28.09 304.38 -7.99 -36.09 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.48 Total: 3.45 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: -2.51 Total: -31.23 kcal Atomic # 7 Polarization: -23.84 SS G_CDS: 0.63 Total: -23.21 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.20 Total: -5.75 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.09 -7.99 -36.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.505 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds