Wall clock time and date at job start Mon Mar 30 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35890 * 117.00139 * 2 1 4 4 C 1.38762 * 120.05549 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94193 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05977 * 0.02609 * 5 4 3 7 7 C 1.50692 * 119.94620 * 179.97438 * 6 5 4 8 8 C 1.38250 * 120.10952 * 359.97438 * 6 5 4 9 9 C 1.50702 * 119.96782 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47446 * 354.47210 * 9 8 6 11 11 C 1.50705 * 109.46848 * 234.47291 * 9 8 6 12 12 H 1.08004 * 120.00110 * 359.97438 * 11 9 8 13 13 C 1.37876 * 120.00073 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99668 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00079 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47094 * 89.99442 * 15 13 11 17 17 H 1.48497 * 109.47320 * 209.99806 * 15 13 11 18 18 H 1.48500 * 109.47101 * 329.99754 * 15 13 11 19 19 C 1.52998 * 109.47083 * 114.47524 * 9 8 6 20 20 C 1.52994 * 117.51836 * 231.28295 * 19 9 8 21 21 C 1.52997 * 60.00367 * 107.47854 * 20 19 9 22 22 C 1.38163 * 120.05463 * 0.23519 * 8 6 5 23 23 H 1.08994 * 109.46950 * 300.00008 * 1 2 3 24 24 H 1.09001 * 109.47000 * 60.00216 * 1 2 3 25 25 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.02810 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.96855 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47412 * 264.56617 * 7 6 5 29 29 H 1.09003 * 109.47147 * 24.56622 * 7 6 5 30 30 H 1.09003 * 109.47055 * 144.55975 * 7 6 5 31 31 H 0.97006 * 119.99840 * 180.02562 * 14 13 11 32 32 H 1.09006 * 115.54866 * 85.57668 * 19 9 8 33 33 H 1.08999 * 117.49982 * 214.97095 * 20 19 9 34 34 H 1.09005 * 117.49737 * 359.97438 * 20 19 9 35 35 H 1.08998 * 117.49996 * 252.51165 * 21 20 19 36 36 H 1.09003 * 117.49898 * 107.48864 * 21 20 19 37 37 H 1.07998 * 120.02533 * 179.74256 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9861 5.0184 -0.0028 8 6 4.0560 2.5170 -0.0011 9 6 5.5609 2.5981 -0.0023 10 1 5.8686 3.6389 -0.1025 11 6 6.1060 1.7996 -1.1583 12 1 5.4304 1.2846 -1.8252 13 6 7.4674 1.7258 -1.3640 14 7 8.2900 2.3525 -0.5517 15 14 8.1431 0.7355 -2.7965 16 1 8.2606 1.6098 -3.9910 17 1 9.4820 0.2008 -2.4408 18 1 7.2238 -0.3915 -3.0965 19 6 6.1033 2.0301 1.3107 20 6 7.0948 2.8900 2.0969 21 6 5.6645 2.7099 2.6093 22 6 3.4311 1.2848 -0.0049 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2129 2.3204 -0.0014 27 1 1.3341 4.5113 -0.0019 28 1 4.2375 5.2973 -1.0261 29 1 3.3185 5.7668 0.4242 30 1 4.8973 4.9624 0.5928 31 1 9.2478 2.3009 -0.6967 32 1 6.2468 0.9497 1.3318 33 1 7.8908 2.3755 2.6352 34 1 7.3612 3.8607 1.6785 35 1 4.9897 3.5621 2.5281 36 1 5.5194 2.0768 3.4847 37 1 4.0207 0.3799 -0.0087 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260358010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:35 Heat of formation + Delta-G solvation = -13.349526 kcal Electronic energy + Delta-G solvation = -18042.189719 eV Core-core repulsion = 15363.638221 eV Total energy + Delta-G solvation = -2678.551499 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.08665 -39.26205 -37.52418 -34.65434 -32.90849 -32.63400 -29.51975 -28.09574 -26.65027 -25.37286 -23.19775 -22.87179 -21.74662 -20.59927 -18.50290 -18.49848 -16.97580 -16.52946 -16.51857 -16.06035 -15.90401 -15.13841 -14.71278 -14.67257 -14.24994 -14.12286 -13.68828 -13.16018 -13.05773 -12.85252 -12.74836 -12.56207 -12.37690 -12.17611 -11.93496 -11.91220 -11.60445 -11.46480 -11.36610 -10.59217 -10.50861 -10.15636 -9.45583 -8.78405 -8.02992 -6.14143 0.64826 0.66722 1.39890 1.42177 1.51168 2.45693 2.52456 3.00055 3.24075 3.39942 4.02275 4.13783 4.25573 4.29460 4.38955 4.45374 4.49773 4.53771 4.59954 4.73245 4.74890 4.80723 4.92486 4.93519 4.98975 5.18826 5.24975 5.32143 5.42049 5.50794 5.53590 5.61081 5.64556 5.71917 5.91451 6.08509 6.16341 6.45803 6.65676 6.92224 7.50918 9.00974 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.008202 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.217928 B = 3412.920042 C = 4009.686124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.107 3.893 4 C -0.220 4.220 5 C -0.080 4.080 6 C -0.147 4.147 7 C -0.101 4.101 8 C -0.013 4.013 9 C 0.107 3.893 10 H 0.029 0.971 11 C -0.529 4.529 12 H 0.042 0.958 13 C 0.026 3.974 14 N -0.893 5.893 15 Si 0.941 3.059 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.277 1.277 19 C -0.100 4.100 20 C -0.138 4.138 21 C -0.193 4.193 22 C -0.161 4.161 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.258 0.742 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 1.719 3.179 13.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C 0.063 3.937 4 C -0.238 4.238 5 C -0.097 4.097 6 C -0.147 4.147 7 C -0.157 4.157 8 C -0.013 4.013 9 C 0.089 3.911 10 H 0.047 0.953 11 C -0.567 4.567 12 H 0.060 0.940 13 C -0.175 4.175 14 N -0.530 5.530 15 Si 0.767 3.233 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.202 1.202 19 C -0.119 4.119 20 C -0.175 4.175 21 C -0.230 4.230 22 C -0.180 4.180 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.134 0.866 26 H 0.171 0.829 27 H 0.170 0.830 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.247 1.559 3.215 13.721 hybrid contribution 0.818 -0.783 -0.880 1.434 sum -12.430 0.775 2.335 12.671 Atomic orbital electron populations 1.23304 0.76634 1.05257 1.02216 1.86029 1.23470 1.27289 1.89147 1.19106 0.91817 0.85006 0.97818 1.21312 1.00614 0.91475 1.10401 1.21051 0.93066 0.97983 0.97638 1.19986 0.94263 0.95308 1.05131 1.20686 1.00135 0.93149 1.01780 1.20031 0.96850 0.91717 0.92683 1.17407 0.86029 0.96177 0.91536 0.95322 1.21289 0.91711 1.31776 1.11963 0.94005 1.25541 0.97359 0.96466 0.98101 1.70114 1.02689 1.42823 1.37400 0.85831 0.77614 0.79278 0.80543 1.20292 1.20827 1.20223 1.21956 1.02526 0.95791 0.91651 1.22351 0.91239 1.01020 1.02860 1.23055 0.98144 1.03540 0.98221 1.20206 0.91590 0.98215 1.07958 0.91552 0.91856 0.86584 0.82915 0.83026 0.92296 0.89570 0.92876 0.93241 0.92527 0.90897 0.90846 0.89442 0.89170 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.34 -11.43 10.50 -92.31 -0.97 -12.40 16 3 C 0.11 3.93 6.69 22.51 0.15 4.08 16 4 C -0.22 -6.58 9.04 22.37 0.20 -6.38 16 5 C -0.08 -2.41 9.67 22.25 0.22 -2.20 16 6 C -0.15 -5.44 5.88 -19.85 -0.12 -5.56 16 7 C -0.10 -3.34 9.15 71.23 0.65 -2.69 16 8 C -0.01 -0.56 4.40 -19.88 -0.09 -0.65 16 9 C 0.11 5.34 1.83 -12.28 -0.02 5.31 16 10 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 11 C -0.53 -29.58 8.06 25.60 0.21 -29.38 16 12 H 0.04 2.40 7.43 -2.91 -0.02 2.38 16 13 C 0.03 1.45 5.30 84.66 0.45 1.90 16 14 N -0.89 -50.13 11.43 21.45 0.25 -49.89 16 15 Si 0.94 44.44 29.54 68.60 2.03 46.47 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 C -0.10 -4.81 3.99 -10.79 -0.04 -4.86 16 20 C -0.14 -6.11 9.04 30.59 0.28 -5.83 16 21 C -0.19 -7.67 9.87 30.59 0.30 -7.37 16 22 C -0.16 -7.06 8.70 22.36 0.19 -6.86 16 23 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 24 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 25 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.15 3.36 6.30 -2.91 -0.02 3.34 16 27 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.09 2.18 8.05 -2.39 -0.02 2.16 16 30 H 0.05 1.94 6.48 -2.39 -0.02 1.92 16 31 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 32 H 0.06 2.95 8.11 -2.38 -0.02 2.93 16 33 H 0.07 3.13 8.14 -2.39 -0.02 3.12 16 34 H 0.07 3.42 8.05 -2.38 -0.02 3.40 16 35 H 0.09 3.32 8.11 -2.39 -0.02 3.30 16 36 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.10 4.80 7.90 -2.91 -0.02 4.78 16 Total: -1.00 -62.91 304.38 5.84 -57.07 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 1.04 Total: 17.70 kcal Atomic # 6 Polarization: -62.44 SS G_CDS: 3.49 Total: -58.95 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.25 Total: -49.89 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.97 Total: -12.40 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -62.91 5.84 -57.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.719 kcal (2) G-P(sol) polarization free energy of solvation -62.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds