Wall clock time and date at job start Mon Mar 30 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38165 * 120.02638 * 2 1 4 4 C 1.38249 * 120.05216 * 179.77199 * 3 2 1 5 5 C 1.38293 * 120.10956 * 0.51013 * 4 3 2 6 6 C 1.50701 * 119.96937 * 179.76850 * 5 4 3 7 7 C 1.38118 * 120.05669 * 359.74231 * 5 4 3 8 8 C 1.50698 * 120.02758 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47225 * 355.43384 * 8 7 5 10 10 C 1.50702 * 109.47317 * 115.43322 * 8 7 5 11 11 H 1.08007 * 119.99645 * 0.02562 * 10 8 7 12 12 C 1.37870 * 120.00688 * 179.97438 * 10 8 7 13 13 N 1.31518 * 119.99665 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00504 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46800 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46925 * 120.00240 * 14 12 10 17 17 H 1.48501 * 109.47497 * 240.00417 * 14 12 10 18 18 C 1.53005 * 109.47656 * 235.43344 * 8 7 5 19 19 C 1.52995 * 117.50099 * 128.61869 * 18 8 7 20 20 C 1.52996 * 117.49519 * 59.99656 * 18 8 7 21 21 C 1.38707 * 120.02593 * 180.28347 * 2 1 3 22 22 O 1.35903 * 120.05869 * 359.97438 * 21 2 1 23 23 H 1.08999 * 109.46774 * 269.71959 * 1 2 3 24 24 H 1.08993 * 109.47031 * 149.72082 * 1 2 3 25 25 H 1.08995 * 109.47026 * 29.71694 * 1 2 3 26 26 H 1.07999 * 119.97440 * 0.02562 * 3 2 1 27 27 H 1.07999 * 119.94467 * 180.25689 * 4 3 2 28 28 H 1.08998 * 109.47038 * 263.80115 * 6 5 4 29 29 H 1.09004 * 109.47058 * 23.80381 * 6 5 4 30 30 H 1.08994 * 109.47047 * 143.80322 * 6 5 4 31 31 H 0.97003 * 119.99878 * 179.97438 * 13 12 10 32 32 H 1.09000 * 115.54655 * 274.33494 * 18 8 7 33 33 H 1.09002 * 117.49779 * 0.02562 * 19 18 8 34 34 H 1.08997 * 117.49708 * 145.02633 * 19 18 8 35 35 H 1.08998 * 117.49954 * 214.98156 * 20 18 8 36 36 H 1.08999 * 117.50050 * 0.02562 * 20 18 8 37 37 H 0.96705 * 113.99390 * 90.00548 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 0.0048 5 6 4.2752 0.0009 -0.0011 6 6 5.7822 0.0053 -0.0012 7 6 3.5887 -1.1976 -0.0064 8 6 4.3460 -2.5005 -0.0122 9 1 5.4142 -2.2995 -0.0932 10 6 4.0709 -3.2471 1.2676 11 1 3.4131 -2.8209 2.0108 12 6 4.6581 -4.4746 1.4896 13 7 5.4587 -4.9938 0.5845 14 14 4.3177 -5.3998 3.0763 15 1 3.3912 -4.6061 3.9229 16 1 3.6982 -6.7120 2.7610 17 1 5.5927 -5.6168 3.8060 18 6 3.8946 -3.3475 -1.2038 19 6 4.9809 -3.9081 -2.1238 20 6 4.0905 -2.7598 -2.6027 21 6 2.2011 -1.2009 -0.0059 22 8 1.5234 -2.3789 -0.0112 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8874 -0.5181 25 1 -0.3633 0.8925 -0.5094 26 1 1.6585 2.1315 0.0004 27 1 4.1196 2.1329 0.0089 28 1 6.1458 -0.0996 -1.0234 29 1 6.1429 0.9446 0.4182 30 1 6.1480 -0.8259 0.6016 31 1 5.8721 -5.8573 0.7407 32 1 3.0105 -3.9624 -1.0354 33 1 6.0172 -3.6738 -1.8800 34 1 4.8117 -4.8922 -2.5609 35 1 3.3355 -2.9884 -3.3549 36 1 4.5412 -1.7699 -2.6742 37 1 1.3270 -2.7156 -0.8963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260371615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:40 Heat of formation + Delta-G solvation = -7.399770 kcal Electronic energy + Delta-G solvation = -18503.351031 eV Core-core repulsion = 15825.057534 eV Total energy + Delta-G solvation = -2678.293498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.59331 -36.40381 -36.02653 -33.26400 -32.37125 -30.11877 -28.78520 -26.98059 -24.30327 -23.41361 -21.46379 -21.16735 -20.05761 -18.84819 -17.03433 -16.50138 -15.33385 -14.97028 -14.55653 -14.33046 -13.88436 -13.20006 -13.03800 -12.76954 -12.54815 -12.42531 -12.23033 -11.86935 -11.65445 -11.16430 -10.93902 -10.91733 -10.69397 -10.58926 -10.48202 -10.17215 -9.77706 -9.66591 -9.50906 -8.70962 -8.63778 -8.21330 -7.72336 -7.62133 -5.91323 -3.94345 1.92792 2.09237 3.34594 3.42833 3.49598 4.28117 4.53866 5.02922 5.07399 5.34882 5.35542 5.42243 5.63567 5.69656 5.89954 5.93641 6.03397 6.04493 6.11284 6.16200 6.21667 6.31007 6.42929 6.49231 6.50676 6.79322 6.84088 6.94754 6.97070 7.10610 7.20074 7.24840 7.31646 7.54665 7.61942 7.87913 8.05138 8.42230 8.55956 9.06865 9.67590 11.14658 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019924 B = 0.009283 C = 0.008480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.003376 B = 3015.648130 C = 3300.910826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.131 4.131 3 C -0.131 4.131 4 C -0.133 4.133 5 C -0.090 4.090 6 C -0.111 4.111 7 C -0.049 4.049 8 C 0.107 3.893 9 H 0.043 0.957 10 C -0.491 4.491 11 H 0.056 0.944 12 C 0.064 3.936 13 N -0.881 5.881 14 Si 0.887 3.113 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.287 1.287 18 C -0.081 4.081 19 C -0.135 4.135 20 C -0.232 4.232 21 C 0.119 3.881 22 O -0.475 6.475 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.256 0.744 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 8.362 -4.482 10.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.131 4.131 3 C -0.149 4.149 4 C -0.151 4.151 5 C -0.090 4.090 6 C -0.168 4.168 7 C -0.050 4.050 8 C 0.089 3.911 9 H 0.061 0.939 10 C -0.529 4.529 11 H 0.074 0.926 12 C -0.138 4.138 13 N -0.519 5.519 14 Si 0.716 3.284 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.213 1.213 18 C -0.099 4.099 19 C -0.172 4.172 20 C -0.269 4.269 21 C 0.074 3.926 22 O -0.284 6.284 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.181 8.250 -3.896 10.036 hybrid contribution -0.216 -0.715 0.336 0.819 sum -4.396 7.535 -3.561 9.423 Atomic orbital electron populations 1.20542 0.91751 1.01592 1.01764 1.20127 0.95916 0.93059 1.04007 1.20590 0.93974 0.96394 1.03977 1.20853 0.93956 0.97051 1.03205 1.19684 0.95933 0.92296 1.01085 1.20783 0.91740 1.02293 1.01954 1.20751 0.93125 0.96663 0.94444 1.17534 0.94343 0.85977 0.93251 0.93895 1.20950 1.27587 1.02905 1.01474 0.92575 1.24909 0.95231 0.97354 0.96262 1.70034 1.30615 1.17762 1.33469 0.86609 0.77826 0.79824 0.84182 1.19899 1.21262 1.21348 1.22248 0.99289 1.00163 0.88234 1.22408 0.96789 0.94795 1.03259 1.23093 1.05015 0.98252 1.00578 1.18069 0.89532 0.84405 1.00626 1.84911 1.75838 1.35961 1.31667 0.91845 0.91879 0.92596 0.87051 0.87087 0.92017 0.92792 0.90097 0.93425 0.89533 0.89687 0.91218 0.91211 0.90608 0.77239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 9.79 36.01 0.35 -1.06 16 2 C -0.13 -2.28 5.89 -104.47 -0.62 -2.90 16 3 C -0.13 -2.13 9.70 -39.60 -0.38 -2.52 16 4 C -0.13 -2.23 9.67 -39.56 -0.38 -2.61 16 5 C -0.09 -1.72 5.88 -104.65 -0.62 -2.34 16 6 C -0.11 -1.92 9.14 36.01 0.33 -1.59 16 7 C -0.05 -1.06 4.39 -104.48 -0.46 -1.51 16 8 C 0.11 2.55 1.75 -92.92 -0.16 2.39 16 9 H 0.04 1.10 5.46 -51.93 -0.28 0.81 16 10 C -0.49 -13.29 7.71 -34.44 -0.27 -13.55 16 11 H 0.06 1.61 7.71 -52.48 -0.40 1.20 16 12 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 13 N -0.88 -24.20 11.44 55.43 0.63 -23.56 16 14 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 C -0.08 -1.80 2.97 -90.62 -0.27 -2.06 16 19 C -0.14 -2.90 9.05 -26.73 -0.24 -3.14 16 20 C -0.23 -4.46 9.87 -26.73 -0.26 -4.72 16 21 C 0.12 2.39 6.26 -39.22 -0.25 2.14 16 22 O -0.48 -9.51 10.28 -19.44 -0.20 -9.71 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.86 7.53 -51.93 -0.39 0.47 16 25 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.79 8.04 -51.93 -0.42 0.37 16 30 H 0.08 1.57 6.55 -51.93 -0.34 1.23 16 31 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.09 2.02 6.90 -51.93 -0.36 1.66 16 33 H 0.08 1.93 8.05 -51.93 -0.42 1.51 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.37 6.11 8.10 45.56 0.37 6.48 16 LS Contribution 301.49 15.07 4.54 4.54 Total: -1.00 -28.78 301.49 -8.12 -36.89 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.76 Total: 7.06 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: -3.32 Total: -31.83 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.63 Total: -23.56 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.20 Total: -9.71 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.78 -8.12 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.495 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds