Wall clock time and date at job start Mon Mar 30 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38165 * 120.02638 * 2 1 4 4 C 1.38249 * 120.05216 * 179.77199 * 3 2 1 5 5 C 1.38293 * 120.10956 * 0.51013 * 4 3 2 6 6 C 1.50701 * 119.96937 * 179.76850 * 5 4 3 7 7 C 1.38118 * 120.05669 * 359.74231 * 5 4 3 8 8 C 1.50698 * 120.02758 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47225 * 355.43384 * 8 7 5 10 10 C 1.50702 * 109.47317 * 115.43322 * 8 7 5 11 11 H 1.08007 * 119.99645 * 0.02562 * 10 8 7 12 12 C 1.37870 * 120.00688 * 179.97438 * 10 8 7 13 13 N 1.31518 * 119.99665 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00504 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46800 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46925 * 120.00240 * 14 12 10 17 17 H 1.48501 * 109.47497 * 240.00417 * 14 12 10 18 18 C 1.53005 * 109.47656 * 235.43344 * 8 7 5 19 19 C 1.52995 * 117.50099 * 128.61869 * 18 8 7 20 20 C 1.52996 * 117.49519 * 59.99656 * 18 8 7 21 21 C 1.38707 * 120.02593 * 180.28347 * 2 1 3 22 22 O 1.35903 * 120.05869 * 359.97438 * 21 2 1 23 23 H 1.08999 * 109.46774 * 269.71959 * 1 2 3 24 24 H 1.08993 * 109.47031 * 149.72082 * 1 2 3 25 25 H 1.08995 * 109.47026 * 29.71694 * 1 2 3 26 26 H 1.07999 * 119.97440 * 0.02562 * 3 2 1 27 27 H 1.07999 * 119.94467 * 180.25689 * 4 3 2 28 28 H 1.08998 * 109.47038 * 263.80115 * 6 5 4 29 29 H 1.09004 * 109.47058 * 23.80381 * 6 5 4 30 30 H 1.08994 * 109.47047 * 143.80322 * 6 5 4 31 31 H 0.97003 * 119.99878 * 179.97438 * 13 12 10 32 32 H 1.09000 * 115.54655 * 274.33494 * 18 8 7 33 33 H 1.09002 * 117.49779 * 0.02562 * 19 18 8 34 34 H 1.08997 * 117.49708 * 145.02633 * 19 18 8 35 35 H 1.08998 * 117.49954 * 214.98156 * 20 18 8 36 36 H 1.08999 * 117.50050 * 0.02562 * 20 18 8 37 37 H 0.96705 * 113.99390 * 90.00548 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 0.0048 5 6 4.2752 0.0009 -0.0011 6 6 5.7822 0.0053 -0.0012 7 6 3.5887 -1.1976 -0.0064 8 6 4.3460 -2.5005 -0.0122 9 1 5.4142 -2.2995 -0.0932 10 6 4.0709 -3.2471 1.2676 11 1 3.4131 -2.8209 2.0108 12 6 4.6581 -4.4746 1.4896 13 7 5.4587 -4.9938 0.5845 14 14 4.3177 -5.3998 3.0763 15 1 3.3912 -4.6061 3.9229 16 1 3.6982 -6.7120 2.7610 17 1 5.5927 -5.6168 3.8060 18 6 3.8946 -3.3475 -1.2038 19 6 4.9809 -3.9081 -2.1238 20 6 4.0905 -2.7598 -2.6027 21 6 2.2011 -1.2009 -0.0059 22 8 1.5234 -2.3789 -0.0112 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8874 -0.5181 25 1 -0.3633 0.8925 -0.5094 26 1 1.6585 2.1315 0.0004 27 1 4.1196 2.1329 0.0089 28 1 6.1458 -0.0996 -1.0234 29 1 6.1429 0.9446 0.4182 30 1 6.1480 -0.8259 0.6016 31 1 5.8721 -5.8573 0.7407 32 1 3.0105 -3.9624 -1.0354 33 1 6.0172 -3.6738 -1.8800 34 1 4.8117 -4.8922 -2.5609 35 1 3.3355 -2.9884 -3.3549 36 1 4.5412 -1.7699 -2.6742 37 1 1.3270 -2.7156 -0.8963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260371615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:40 Heat of formation + Delta-G solvation = -22.833874 kcal Electronic energy + Delta-G solvation = -18504.020304 eV Core-core repulsion = 15825.057534 eV Total energy + Delta-G solvation = -2678.962771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.04454 -38.06550 -37.48333 -34.83511 -34.19608 -31.70510 -30.06050 -28.70417 -25.68739 -25.21485 -23.01669 -22.76874 -21.56875 -20.48121 -18.59588 -18.37800 -16.79958 -16.63839 -16.26909 -15.94389 -15.43117 -14.64069 -14.62373 -14.19609 -13.93302 -13.90254 -13.77915 -13.37563 -12.93046 -12.87396 -12.84779 -12.38410 -12.25777 -12.18710 -12.09907 -11.90572 -11.61861 -11.46603 -11.07243 -10.59811 -10.43982 -10.07413 -9.12555 -9.08030 -7.99301 -6.07431 0.55129 0.68853 1.37036 1.40655 1.51222 2.47351 2.92075 3.26133 3.39673 3.64743 4.10138 4.14342 4.24207 4.31615 4.46339 4.51552 4.59659 4.69469 4.81733 4.84359 4.89403 4.90956 4.94170 4.98757 5.19586 5.22862 5.36290 5.38562 5.48653 5.52459 5.58833 5.70353 5.75746 5.82847 5.95597 6.14447 6.26141 6.47294 6.96202 7.14131 7.55592 9.04106 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019924 B = 0.009283 C = 0.008480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.003376 B = 3015.648130 C = 3300.910826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.136 4.136 3 C -0.124 4.124 4 C -0.129 4.129 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.083 4.083 8 C 0.115 3.885 9 H 0.018 0.982 10 C -0.500 4.500 11 H 0.030 0.970 12 C 0.023 3.977 13 N -0.897 5.897 14 Si 0.937 3.063 15 H -0.281 1.281 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.094 4.094 19 C -0.144 4.144 20 C -0.193 4.193 21 C 0.097 3.903 22 O -0.492 6.492 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.150 0.850 27 H 0.145 0.855 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.256 0.744 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 10.423 -5.131 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.136 4.136 3 C -0.142 4.142 4 C -0.147 4.147 5 C -0.108 4.108 6 C -0.162 4.162 7 C -0.084 4.084 8 C 0.096 3.904 9 H 0.036 0.964 10 C -0.538 4.538 11 H 0.049 0.951 12 C -0.176 4.176 13 N -0.535 5.535 14 Si 0.765 3.235 15 H -0.206 1.206 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.113 4.113 19 C -0.182 4.182 20 C -0.230 4.230 21 C 0.052 3.948 22 O -0.302 6.302 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.167 0.833 27 H 0.162 0.838 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.327 10.310 -4.551 12.465 hybrid contribution 0.115 -1.283 0.548 1.400 sum -5.212 9.027 -4.004 11.166 Atomic orbital electron populations 1.20590 0.89429 1.03142 1.02228 1.20497 0.97747 0.92435 1.02932 1.21069 0.93994 0.97385 1.01744 1.21216 0.94537 0.97277 1.01622 1.19953 0.96707 0.92636 1.01510 1.20728 0.91124 1.02402 1.01963 1.20681 0.93927 0.96252 0.97517 1.17260 0.93236 0.87494 0.92361 0.96429 1.21085 1.26861 1.03369 1.02525 0.95115 1.25466 0.95421 0.98112 0.98618 1.70122 1.31128 1.17856 1.34434 0.85830 0.77565 0.78690 0.81415 1.20603 1.20836 1.20786 1.21981 0.98917 1.00898 0.89456 1.22329 0.95838 0.96013 1.03991 1.23053 1.03848 0.97345 0.98739 1.18312 0.89359 0.85283 1.01805 1.84863 1.75854 1.36652 1.32878 0.91771 0.91803 0.89663 0.83259 0.83770 0.91347 0.89873 0.93404 0.93523 0.91085 0.91597 0.90883 0.88438 0.90260 0.76048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.47 9.79 71.24 0.70 -1.78 16 2 C -0.14 -4.43 5.89 -19.77 -0.12 -4.55 16 3 C -0.12 -3.56 9.70 22.25 0.22 -3.35 16 4 C -0.13 -3.91 9.67 22.29 0.22 -3.70 16 5 C -0.11 -4.04 5.88 -19.88 -0.12 -4.15 16 6 C -0.11 -3.62 9.14 71.24 0.65 -2.97 16 7 C -0.08 -3.59 4.39 -19.77 -0.09 -3.68 16 8 C 0.11 5.66 1.75 -12.28 -0.02 5.64 16 9 H 0.02 0.95 5.46 -2.39 -0.01 0.94 16 10 C -0.50 -28.12 7.71 25.60 0.20 -27.93 16 11 H 0.03 1.84 7.71 -2.91 -0.02 1.81 16 12 C 0.02 1.31 5.30 84.65 0.45 1.76 16 13 N -0.90 -50.65 11.44 21.45 0.25 -50.41 16 14 Si 0.94 45.46 29.54 68.60 2.03 47.48 16 15 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 16 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 C -0.09 -4.26 2.97 -10.79 -0.03 -4.29 16 19 C -0.14 -6.28 9.05 30.59 0.28 -6.01 16 20 C -0.19 -7.23 9.87 30.59 0.30 -6.93 16 21 C 0.10 3.87 6.26 22.51 0.14 4.02 16 22 O -0.49 -19.96 10.28 -92.46 -0.95 -20.91 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 1.60 7.53 -2.39 -0.02 1.58 16 25 H 0.08 1.65 8.08 -2.39 -0.02 1.64 16 26 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 27 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.08 2.28 8.04 -2.39 -0.02 2.26 16 30 H 0.05 1.93 6.55 -2.39 -0.02 1.92 16 31 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.07 3.41 6.90 -2.39 -0.02 3.40 16 33 H 0.07 3.09 8.05 -2.39 -0.02 3.07 16 34 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.38 12.76 8.10 -74.05 -0.60 12.16 16 Total: -1.00 -63.46 301.49 4.56 -58.90 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.46 Total: 22.83 kcal Atomic # 6 Polarization: -60.67 SS G_CDS: 2.77 Total: -57.90 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.25 Total: -50.41 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.95 Total: -20.91 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -63.46 4.56 -58.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.068 kcal (2) G-P(sol) polarization free energy of solvation -63.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds