Wall clock time and date at job start Mon Mar 30 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38280 * 119.94454 * 2 1 4 4 C 1.38124 * 120.05565 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.94139 * 0.02562 * 4 3 2 6 6 O 1.35905 * 120.05441 * 180.02562 * 5 4 3 7 7 C 1.42907 * 116.99903 * 6.77623 * 6 5 4 8 8 C 1.52998 * 117.49685 * 226.23354 * 7 6 5 9 9 C 1.53004 * 117.49718 * 157.57676 * 7 6 5 10 10 C 1.38704 * 119.89163 * 0.27594 * 5 4 3 11 11 C 1.50698 * 120.03220 * 179.72430 * 10 5 4 12 12 C 1.52997 * 109.47382 * 84.99914 * 11 10 5 13 13 C 1.50694 * 109.47429 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00205 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00416 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99428 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00382 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46911 * 60.00325 * 17 15 13 19 19 H 1.48502 * 109.46733 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47116 * 300.00102 * 17 15 13 21 21 C 1.38175 * 119.94252 * 359.40580 * 10 5 4 22 22 H 1.09006 * 109.47075 * 90.00114 * 1 2 3 23 23 H 1.08992 * 109.47779 * 210.00050 * 1 2 3 24 24 H 1.09004 * 109.47069 * 330.00431 * 1 2 3 25 25 H 1.08004 * 119.97511 * 359.97438 * 3 2 1 26 26 H 1.08003 * 120.02917 * 180.02562 * 4 3 2 27 27 H 1.08991 * 115.54989 * 11.90295 * 7 6 5 28 28 H 1.09007 * 117.50016 * 359.97438 * 8 7 6 29 29 H 1.08999 * 117.50318 * 145.01730 * 8 7 6 30 30 H 1.08994 * 117.49197 * 214.98076 * 9 7 6 31 31 H 1.09001 * 117.49571 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47204 * 205.00351 * 11 10 5 33 33 H 1.09003 * 109.47191 * 324.99979 * 11 10 5 34 34 H 1.09001 * 109.47308 * 300.00374 * 12 11 10 35 35 H 1.09003 * 109.46904 * 59.99889 * 12 11 10 36 36 H 0.97006 * 119.99521 * 180.02562 * 16 15 13 37 37 H 1.07997 * 119.97136 * 180.31995 * 21 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2733 -0.0001 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2811 1.2642 0.1529 8 6 7.4390 1.5820 -0.7953 9 6 7.7192 1.2623 0.6752 10 6 3.5787 -1.2006 -0.0058 11 6 4.3302 -2.5068 -0.0121 12 6 4.6929 -2.8935 1.4231 13 6 5.4450 -4.1994 1.4167 14 1 5.6447 -4.7030 0.4824 15 6 5.8791 -4.7508 2.6035 16 7 5.6373 -4.1367 3.7412 17 14 6.8107 -6.3699 2.5957 18 1 8.0516 -6.2231 1.7934 19 1 7.1639 -6.7443 3.9887 20 1 5.9577 -7.4289 1.9990 21 6 2.1969 -1.1980 0.0003 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 1.6559 2.1328 -0.0004 26 1 4.1172 2.1370 0.0010 27 1 5.6369 2.0898 0.4551 28 1 7.7062 0.8266 -1.5343 29 1 7.5568 2.6169 -1.1167 30 1 8.0212 2.0869 1.3207 31 1 8.1703 0.2967 0.9037 32 1 3.7042 -3.2840 -0.4506 33 1 5.2413 -2.3990 -0.6007 34 1 5.3189 -2.1163 1.8616 35 1 3.7818 -3.0013 2.0116 36 1 5.9430 -4.5244 4.5761 37 1 1.6556 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260382831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:52 Heat of formation + Delta-G solvation = -0.905700 kcal Electronic energy + Delta-G solvation = -17374.895910 eV Core-core repulsion = 14696.884016 eV Total energy + Delta-G solvation = -2678.011894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99078 -37.88783 -35.19726 -34.04874 -32.14840 -31.26226 -28.96423 -26.16804 -24.94896 -23.43016 -22.37707 -21.64585 -20.49493 -19.71370 -17.98728 -16.24610 -15.97317 -15.02356 -14.80931 -14.58384 -14.32131 -13.98095 -13.54765 -13.35102 -12.92667 -12.58329 -12.32420 -12.17013 -11.74098 -11.56405 -11.47813 -11.25269 -10.98893 -10.81970 -10.64824 -10.51291 -10.23577 -9.79902 -9.66785 -9.52690 -9.01181 -8.31473 -8.26347 -7.48061 -5.91959 -3.94144 1.72605 1.79680 3.36479 3.37746 3.41490 3.44370 3.81658 4.15917 4.52140 4.72020 4.95430 5.07627 5.12136 5.16951 5.21603 5.43298 5.45880 5.54832 5.63222 5.69344 5.75636 5.92725 5.97341 6.05128 6.13979 6.19244 6.32081 6.42678 6.67883 6.80041 6.90094 7.00815 7.13895 7.29167 7.77890 7.85630 7.96244 8.10069 8.50528 9.12669 9.68741 11.19184 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.006970 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.295817 B = 4016.218625 C = 5383.856912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C -0.100 4.100 4 C -0.207 4.207 5 C 0.125 3.875 6 O -0.268 6.268 7 C 0.005 3.995 8 C -0.189 4.189 9 C -0.170 4.170 10 C -0.083 4.083 11 C -0.071 4.071 12 C 0.034 3.966 13 C -0.518 4.518 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.084 4.084 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 13.053 -7.992 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.226 4.226 5 C 0.080 3.920 6 O -0.181 6.181 7 C -0.052 4.052 8 C -0.226 4.226 9 C -0.207 4.207 10 C -0.084 4.084 11 C -0.108 4.108 12 C -0.003 4.003 13 C -0.556 4.556 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.103 4.103 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.134 0.866 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.823 12.866 -7.815 15.532 hybrid contribution 0.550 -0.621 0.196 0.852 sum -3.273 12.246 -7.619 14.789 Atomic orbital electron populations 1.20672 0.91583 1.02324 1.01606 1.19740 0.95789 0.93104 1.04076 1.20608 0.93140 0.97206 1.00833 1.21094 0.95194 0.96770 1.09521 1.18807 0.82016 0.93647 0.97480 1.86152 1.16520 1.28812 1.86593 1.22942 0.89656 0.87473 1.05160 1.23452 1.02389 1.02602 0.94144 1.23344 0.96833 1.04221 0.96350 1.19759 0.93253 0.94509 1.00881 1.20671 0.97940 0.90327 1.01878 1.19015 0.96418 0.96053 0.88851 1.21229 1.35457 1.06337 0.92626 0.92770 1.25011 0.96277 0.97451 0.95658 1.69976 1.46845 1.39086 0.97583 0.86681 0.80402 0.84171 0.76877 1.20283 1.21333 1.20264 1.20803 0.92631 0.97600 0.99218 0.91885 0.91738 0.92154 0.86570 0.85875 0.86285 0.87934 0.88231 0.87873 0.87339 0.92487 0.91992 0.96257 0.96778 0.93062 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.01 0.36 -0.85 16 2 C -0.13 -1.92 5.88 -104.60 -0.62 -2.53 16 3 C -0.10 -1.44 9.69 -39.61 -0.38 -1.83 16 4 C -0.21 -3.24 9.10 -39.43 -0.36 -3.60 16 5 C 0.13 2.36 6.65 -39.22 -0.26 2.10 16 6 O -0.27 -5.15 9.53 -19.44 -0.19 -5.33 16 7 C 0.00 0.07 6.07 -26.73 -0.16 -0.09 16 8 C -0.19 -2.26 10.48 -26.70 -0.28 -2.54 16 9 C -0.17 -2.24 10.48 -26.69 -0.28 -2.52 16 10 C -0.08 -1.67 5.15 -104.47 -0.54 -2.21 16 11 C -0.07 -1.60 5.00 -27.89 -0.14 -1.74 16 12 C 0.03 0.92 4.95 -27.89 -0.14 0.78 16 13 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 14 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 17 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 C -0.08 -1.48 9.33 -39.60 -0.37 -1.85 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 24 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 25 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 26 H 0.12 1.59 5.72 -52.48 -0.30 1.29 16 27 H 0.12 1.49 5.60 -51.93 -0.29 1.20 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 32 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 33 H 0.06 1.42 7.69 -51.93 -0.40 1.02 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 37 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 313.43 15.07 4.72 4.72 Total: -1.00 -32.44 313.43 -8.92 -41.36 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.59 Total: -0.10 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: -3.58 Total: -30.82 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.74 Total: -27.00 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.19 Total: -5.33 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.44 -8.92 -41.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.452 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds