Wall clock time and date at job start Mon Mar 30 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38280 * 119.94454 * 2 1 4 4 C 1.38124 * 120.05565 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.94139 * 0.02562 * 4 3 2 6 6 O 1.35905 * 120.05441 * 180.02562 * 5 4 3 7 7 C 1.42907 * 116.99903 * 6.77623 * 6 5 4 8 8 C 1.52998 * 117.49685 * 226.23354 * 7 6 5 9 9 C 1.53004 * 117.49718 * 157.57676 * 7 6 5 10 10 C 1.38704 * 119.89163 * 0.27594 * 5 4 3 11 11 C 1.50698 * 120.03220 * 179.72430 * 10 5 4 12 12 C 1.52997 * 109.47382 * 84.99914 * 11 10 5 13 13 C 1.50694 * 109.47429 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00205 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00416 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99428 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00382 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46911 * 60.00325 * 17 15 13 19 19 H 1.48502 * 109.46733 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47116 * 300.00102 * 17 15 13 21 21 C 1.38175 * 119.94252 * 359.40580 * 10 5 4 22 22 H 1.09006 * 109.47075 * 90.00114 * 1 2 3 23 23 H 1.08992 * 109.47779 * 210.00050 * 1 2 3 24 24 H 1.09004 * 109.47069 * 330.00431 * 1 2 3 25 25 H 1.08004 * 119.97511 * 359.97438 * 3 2 1 26 26 H 1.08003 * 120.02917 * 180.02562 * 4 3 2 27 27 H 1.08991 * 115.54989 * 11.90295 * 7 6 5 28 28 H 1.09007 * 117.50016 * 359.97438 * 8 7 6 29 29 H 1.08999 * 117.50318 * 145.01730 * 8 7 6 30 30 H 1.08994 * 117.49197 * 214.98076 * 9 7 6 31 31 H 1.09001 * 117.49571 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47204 * 205.00351 * 11 10 5 33 33 H 1.09003 * 109.47191 * 324.99979 * 11 10 5 34 34 H 1.09001 * 109.47308 * 300.00374 * 12 11 10 35 35 H 1.09003 * 109.46904 * 59.99889 * 12 11 10 36 36 H 0.97006 * 119.99521 * 180.02562 * 16 15 13 37 37 H 1.07997 * 119.97136 * 180.31995 * 21 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2733 -0.0001 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2811 1.2642 0.1529 8 6 7.4390 1.5820 -0.7953 9 6 7.7192 1.2623 0.6752 10 6 3.5787 -1.2006 -0.0058 11 6 4.3302 -2.5068 -0.0121 12 6 4.6929 -2.8935 1.4231 13 6 5.4450 -4.1994 1.4167 14 1 5.6447 -4.7030 0.4824 15 6 5.8791 -4.7508 2.6035 16 7 5.6373 -4.1367 3.7412 17 14 6.8107 -6.3699 2.5957 18 1 8.0516 -6.2231 1.7934 19 1 7.1639 -6.7443 3.9887 20 1 5.9577 -7.4289 1.9990 21 6 2.1969 -1.1980 0.0003 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 1.6559 2.1328 -0.0004 26 1 4.1172 2.1370 0.0010 27 1 5.6369 2.0898 0.4551 28 1 7.7062 0.8266 -1.5343 29 1 7.5568 2.6169 -1.1167 30 1 8.0212 2.0869 1.3207 31 1 8.1703 0.2967 0.9037 32 1 3.7042 -3.2840 -0.4506 33 1 5.2413 -2.3990 -0.6007 34 1 5.3189 -2.1163 1.8616 35 1 3.7818 -3.0013 2.0116 36 1 5.9430 -4.5244 4.5761 37 1 1.6556 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260382831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:52 Heat of formation + Delta-G solvation = -18.691117 kcal Electronic energy + Delta-G solvation = -17375.667143 eV Core-core repulsion = 14696.884016 eV Total energy + Delta-G solvation = -2678.783127 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.27349 -39.09519 -36.40422 -35.93161 -34.07551 -32.44298 -30.76328 -27.41022 -26.81788 -24.65120 -23.51180 -23.37284 -21.73179 -21.22736 -19.25934 -18.50154 -17.26879 -16.56672 -16.14977 -16.03614 -15.75651 -15.24808 -14.68678 -14.60269 -14.47186 -14.33276 -14.07540 -13.44400 -13.30587 -12.90649 -12.77285 -12.71069 -12.48621 -12.37144 -12.33736 -11.90645 -11.69594 -11.56727 -11.40477 -11.11697 -10.85144 -10.56921 -9.68841 -8.79222 -8.20605 -6.33475 0.43583 0.51176 1.36902 1.41387 1.49298 2.19918 2.39357 2.72233 2.92802 3.10994 3.64112 3.87942 3.95312 3.98018 4.03305 4.13274 4.29142 4.40387 4.55225 4.63764 4.68872 4.76502 4.84572 4.87356 4.92828 4.95236 5.05599 5.17307 5.19539 5.29472 5.39759 5.45514 5.48062 5.71306 5.79920 5.82476 6.00739 6.21739 6.61076 6.82293 7.35266 8.90907 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.006970 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.295817 B = 4016.218625 C = 5383.856912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.127 4.127 3 C -0.091 4.091 4 C -0.204 4.204 5 C 0.104 3.896 6 O -0.306 6.306 7 C -0.025 4.025 8 C -0.165 4.165 9 C -0.178 4.178 10 C -0.125 4.125 11 C -0.054 4.054 12 C 0.047 3.953 13 C -0.546 4.546 14 H 0.059 0.941 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.264 1.264 21 C -0.097 4.097 22 H 0.081 0.919 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.158 0.842 26 H 0.153 0.847 27 H 0.143 0.857 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.048 0.952 34 H -0.018 1.018 35 H -0.013 1.013 36 H 0.264 0.736 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 14.593 -8.796 17.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.223 4.223 5 C 0.059 3.941 6 O -0.220 6.220 7 C -0.081 4.081 8 C -0.202 4.202 9 C -0.215 4.215 10 C -0.126 4.126 11 C -0.091 4.091 12 C 0.010 3.990 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.188 1.188 21 C -0.115 4.115 22 H 0.099 0.901 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.176 0.824 26 H 0.171 0.829 27 H 0.160 0.840 28 H 0.109 0.891 29 H 0.156 0.844 30 H 0.150 0.850 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.001 0.999 35 H 0.005 0.995 36 H 0.073 0.927 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.533 14.412 -8.636 17.402 hybrid contribution 0.743 -1.008 0.459 1.334 sum -3.790 13.404 -8.177 16.152 Atomic orbital electron populations 1.20739 0.88706 1.03411 1.03084 1.20173 0.97865 0.92304 1.02400 1.21138 0.92797 0.98603 0.98288 1.21449 0.95988 0.96606 1.08219 1.19049 0.82220 0.94474 0.98351 1.86083 1.17132 1.31810 1.87006 1.23412 0.90363 0.86682 1.07596 1.23535 0.99481 1.04274 0.92894 1.23428 0.95948 1.03882 0.98284 1.19669 0.94423 0.93692 1.04780 1.20312 0.97932 0.92621 0.98229 1.18777 0.94161 0.94573 0.91446 1.21657 1.36213 1.07305 0.93222 0.92281 1.26025 0.97034 1.01712 0.94995 1.70124 1.47763 1.41082 0.98373 0.85464 0.79047 0.78941 0.77378 1.19269 1.20467 1.18832 1.20963 0.91810 0.99152 0.99602 0.90078 0.91816 0.89970 0.82435 0.82925 0.84000 0.89127 0.84444 0.84957 0.90323 0.91997 0.93321 0.99934 0.99509 0.92726 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.01 71.24 0.71 -1.34 16 2 C -0.13 -3.60 5.88 -19.85 -0.12 -3.72 16 3 C -0.09 -2.34 9.69 22.25 0.22 -2.12 16 4 C -0.20 -6.04 9.10 22.37 0.20 -5.84 16 5 C 0.10 4.01 6.65 22.50 0.15 4.16 16 6 O -0.31 -12.34 9.53 -92.48 -0.88 -13.22 16 7 C -0.02 -0.71 6.07 30.59 0.19 -0.53 16 8 C -0.16 -3.73 10.48 30.62 0.32 -3.41 16 9 C -0.18 -4.68 10.48 30.62 0.32 -4.36 16 10 C -0.13 -5.24 5.15 -19.77 -0.10 -5.34 16 11 C -0.05 -2.58 5.00 29.85 0.15 -2.43 16 12 C 0.05 2.79 4.95 29.85 0.15 2.94 16 13 C -0.55 -33.45 9.11 25.60 0.23 -33.21 16 14 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.00 0.00 5.46 84.65 0.46 0.46 16 16 N -0.93 -59.72 13.29 21.45 0.28 -59.43 16 17 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 21 C -0.10 -3.46 9.33 22.26 0.21 -3.25 16 22 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 23 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 24 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 25 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 26 H 0.15 3.47 5.72 -2.91 -0.02 3.45 16 27 H 0.14 3.28 5.60 -2.39 -0.01 3.26 16 28 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.06 2.81 8.05 -2.39 -0.02 2.79 16 33 H 0.05 2.40 7.69 -2.39 -0.02 2.38 16 34 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 35 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 37 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -74.45 313.43 5.56 -68.89 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 1.04 Total: 13.54 kcal Atomic # 6 Polarization: -61.09 SS G_CDS: 3.09 Total: -58.00 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.28 Total: -59.43 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.88 Total: -13.22 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -74.45 5.56 -68.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.199 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds