Wall clock time and date at job start Mon Mar 30 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50707 * 109.47050 * 2 1 4 4 C 1.38167 * 120.02799 * 99.99881 * 3 2 1 5 5 C 1.38243 * 120.05639 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.94385 * 179.97438 * 5 4 3 7 7 C 1.50699 * 115.54530 * 114.35600 * 6 5 4 8 8 H 1.08002 * 119.99518 * 144.72806 * 7 6 5 9 9 C 1.37875 * 120.00037 * 324.72726 * 7 6 5 10 10 N 1.31508 * 120.00281 * 351.59167 * 9 7 6 11 11 Si 1.86800 * 119.99700 * 171.59738 * 9 7 6 12 12 H 1.48496 * 109.47466 * 59.99800 * 11 9 7 13 13 H 1.48505 * 109.47103 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47104 * 299.99663 * 11 9 7 15 15 C 1.52999 * 117.50026 * 328.68787 * 6 5 4 16 16 C 1.52996 * 117.50083 * 260.02694 * 6 5 4 17 17 C 1.38282 * 120.10952 * 0.02798 * 5 4 3 18 18 C 1.50705 * 119.96985 * 179.97438 * 17 5 4 19 19 C 1.38123 * 120.06093 * 359.97438 * 17 5 4 20 20 C 1.38709 * 120.02717 * 280.29724 * 3 2 1 21 21 O 1.35894 * 120.05915 * 0.02562 * 20 3 2 22 22 H 1.09008 * 109.47253 * 60.00086 * 1 2 3 23 23 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47586 * 300.00176 * 1 2 3 25 25 H 1.09007 * 109.47538 * 240.00219 * 2 1 3 26 26 H 1.09000 * 109.47493 * 120.00049 * 2 1 3 27 27 H 1.08004 * 119.97209 * 359.97438 * 4 3 2 28 28 H 0.97001 * 120.00273 * 185.01652 * 10 9 7 29 29 H 1.09003 * 117.50052 * 359.97438 * 15 6 5 30 30 H 1.09001 * 117.49931 * 145.01198 * 15 6 5 31 31 H 1.08999 * 117.49684 * 214.97753 * 16 6 5 32 32 H 1.08997 * 117.49728 * 359.97438 * 16 6 5 33 33 H 1.09001 * 109.46934 * 266.27437 * 18 17 5 34 34 H 1.09003 * 109.47183 * 26.27588 * 18 17 5 35 35 H 1.09003 * 109.47047 * 146.27839 * 18 17 5 36 36 H 1.07998 * 120.02903 * 180.02562 * 19 17 5 37 37 H 0.96700 * 114.00043 * 270.29806 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4586 2.0035 1.1781 5 6 2.9200 3.3067 1.1786 6 6 3.3838 3.9399 2.4651 7 6 4.8504 4.2801 2.5302 8 1 5.1766 5.1647 3.0571 9 6 5.7757 3.4622 1.9171 10 7 5.4018 2.3038 1.4195 11 14 7.5604 3.9996 1.7935 12 1 8.1111 4.2052 3.1572 13 1 8.3462 2.9502 1.0959 14 1 7.6430 5.2704 1.0295 15 6 2.7053 3.4878 3.7598 16 6 2.4091 4.8748 3.1840 17 6 2.9556 4.0305 0.0009 18 6 3.4586 5.4511 0.0053 19 6 2.5305 3.4527 -1.1794 20 6 2.0612 2.1469 -1.1816 21 8 1.6363 1.5783 -2.3404 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.4313 1.4404 2.0993 28 1 6.0639 1.6967 1.0536 29 1 1.9231 2.7327 3.6811 30 1 3.3197 3.4368 4.6587 31 1 2.8287 5.7358 3.7043 32 1 1.4325 5.0322 2.7261 33 1 2.6168 6.1343 0.1187 34 1 4.1523 5.5884 0.8348 35 1 3.9705 5.6582 -0.9346 36 1 2.5589 4.0183 -2.0990 37 1 2.3317 1.1198 -2.8317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260385489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:49 Heat of formation + Delta-G solvation = -11.808246 kcal Electronic energy + Delta-G solvation = -18403.535525 eV Core-core repulsion = 15725.050861 eV Total energy + Delta-G solvation = -2678.484664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.33413 -37.14898 -34.99704 -33.68454 -32.17186 -30.21182 -28.58193 -25.89230 -25.64919 -22.37195 -22.24702 -21.20014 -20.15068 -18.86012 -17.12685 -16.46685 -15.23920 -14.73494 -14.58627 -14.31646 -13.68867 -13.27191 -13.09771 -12.91410 -12.52699 -12.12640 -12.02092 -11.65359 -11.37578 -11.06512 -10.98826 -10.94405 -10.72534 -10.50494 -10.48329 -10.36959 -10.20691 -9.56574 -9.46643 -9.15404 -8.79495 -8.29587 -7.65546 -7.18027 -6.01950 -4.11720 2.31950 2.41416 3.24896 3.31010 3.33193 4.32519 4.59519 4.95036 5.04921 5.41189 5.49048 5.53803 5.80197 5.84952 5.93728 6.06031 6.22750 6.23408 6.28245 6.36039 6.42093 6.46902 6.55444 6.61620 6.65991 6.68228 6.86966 6.91895 6.94406 7.03544 7.27315 7.35569 7.41115 7.57830 7.76080 7.89708 7.94724 8.32527 8.40805 8.82493 9.45136 10.94356 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.008880 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.150713 B = 3152.550906 C = 3377.719317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.120 4.120 4 C -0.067 4.067 5 C 0.039 3.961 6 C 0.085 3.915 7 C -0.495 4.495 8 H 0.063 0.937 9 C 0.077 3.923 10 N -0.859 5.859 11 Si 0.887 3.113 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.206 4.206 16 C -0.203 4.203 17 C -0.065 4.065 18 C -0.119 4.119 19 C -0.153 4.153 20 C 0.070 3.930 21 O -0.503 6.503 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.103 0.897 35 H 0.043 0.957 36 H 0.108 0.892 37 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 -1.470 -3.470 6.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.120 4.120 4 C -0.085 4.085 5 C 0.038 3.962 6 C 0.084 3.916 7 C -0.532 4.532 8 H 0.081 0.919 9 C -0.128 4.128 10 N -0.493 5.493 11 Si 0.715 3.285 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.243 4.243 16 C -0.240 4.240 17 C -0.065 4.065 18 C -0.175 4.175 19 C -0.171 4.171 20 C 0.026 3.974 21 O -0.311 6.311 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.121 0.879 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.572 -1.393 -3.470 6.710 hybrid contribution 1.579 -0.130 -0.262 1.606 sum -3.993 -1.522 -3.733 5.674 Atomic orbital electron populations 1.21712 0.95603 1.00510 1.02042 1.20246 0.95412 0.93449 1.01521 1.19876 1.02857 0.95757 0.93528 1.20504 0.97297 0.94627 0.96104 1.18941 0.91006 0.92358 0.93859 1.17721 0.92328 0.95423 0.86112 1.20340 0.88121 1.10045 1.34665 0.91863 1.24965 0.98600 0.94916 0.94354 1.69973 1.33654 1.07483 1.38194 0.86727 0.84835 0.78597 0.78385 1.20228 1.21264 1.19945 1.23065 1.03868 0.95924 1.01493 1.22916 1.00263 0.93699 1.07145 1.19382 0.98525 0.96619 0.92018 1.20923 1.00999 0.92229 1.03334 1.20980 1.02875 0.95324 0.97960 1.17988 1.02480 0.92008 0.84933 1.84791 1.38335 1.73497 1.34514 0.92365 0.93449 0.93070 0.92163 0.91853 0.87121 0.92743 0.91530 0.90265 0.90376 0.91341 0.93208 0.87880 0.93767 0.87385 0.77450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 37.15 0.37 -1.73 16 2 C -0.07 -1.15 5.72 -27.88 -0.16 -1.31 16 3 C -0.12 -2.40 5.15 -104.47 -0.54 -2.94 16 4 C -0.07 -1.49 8.15 -39.61 -0.32 -1.82 16 5 C 0.04 0.90 3.29 -104.60 -0.34 0.56 16 6 C 0.08 2.00 1.19 -156.81 -0.19 1.81 16 7 C -0.49 -12.66 6.88 -34.44 -0.24 -12.89 16 8 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 9 C 0.08 2.00 5.28 -17.82 -0.09 1.91 16 10 N -0.86 -22.89 11.16 55.43 0.62 -22.27 16 11 Si 0.89 20.26 29.55 -169.99 -5.02 15.24 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 C -0.21 -4.51 9.43 -26.70 -0.25 -4.76 16 16 C -0.20 -4.27 9.94 -26.70 -0.27 -4.53 16 17 C -0.07 -1.44 5.85 -104.65 -0.61 -2.05 16 18 C -0.12 -2.41 9.63 36.01 0.35 -2.06 16 19 C -0.15 -3.15 9.66 -39.43 -0.38 -3.53 16 20 C 0.07 1.38 6.67 -39.21 -0.26 1.12 16 21 O -0.50 -8.54 12.62 -19.41 -0.24 -8.79 16 22 H 0.06 0.90 8.02 -51.92 -0.42 0.49 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.94 7.86 -51.92 -0.41 0.53 16 26 H 0.06 1.04 8.00 -51.93 -0.42 0.62 16 27 H 0.11 2.47 7.00 -52.48 -0.37 2.10 16 28 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 29 H 0.07 1.38 7.14 -51.93 -0.37 1.01 16 30 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 31 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 2.31 5.17 -51.93 -0.27 2.04 16 35 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 36 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.37 4.79 9.06 45.56 0.41 5.21 16 LS Contribution 304.80 15.07 4.59 4.59 Total: -1.00 -27.50 304.80 -7.76 -35.25 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -4.76 Total: 8.20 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: -2.94 Total: -32.24 kcal Atomic # 7 Polarization: -22.89 SS G_CDS: 0.62 Total: -22.27 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.24 Total: -8.79 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.50 -7.76 -35.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.447 kcal (2) G-P(sol) polarization free energy of solvation -27.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds