Wall clock time and date at job start Mon Mar 30 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50707 * 109.47050 * 2 1 4 4 C 1.38167 * 120.02799 * 99.99881 * 3 2 1 5 5 C 1.38243 * 120.05639 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.94385 * 179.97438 * 5 4 3 7 7 C 1.50699 * 115.54530 * 114.35600 * 6 5 4 8 8 H 1.08002 * 119.99518 * 144.72806 * 7 6 5 9 9 C 1.37875 * 120.00037 * 324.72726 * 7 6 5 10 10 N 1.31508 * 120.00281 * 351.59167 * 9 7 6 11 11 Si 1.86800 * 119.99700 * 171.59738 * 9 7 6 12 12 H 1.48496 * 109.47466 * 59.99800 * 11 9 7 13 13 H 1.48505 * 109.47103 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47104 * 299.99663 * 11 9 7 15 15 C 1.52999 * 117.50026 * 328.68787 * 6 5 4 16 16 C 1.52996 * 117.50083 * 260.02694 * 6 5 4 17 17 C 1.38282 * 120.10952 * 0.02798 * 5 4 3 18 18 C 1.50705 * 119.96985 * 179.97438 * 17 5 4 19 19 C 1.38123 * 120.06093 * 359.97438 * 17 5 4 20 20 C 1.38709 * 120.02717 * 280.29724 * 3 2 1 21 21 O 1.35894 * 120.05915 * 0.02562 * 20 3 2 22 22 H 1.09008 * 109.47253 * 60.00086 * 1 2 3 23 23 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47586 * 300.00176 * 1 2 3 25 25 H 1.09007 * 109.47538 * 240.00219 * 2 1 3 26 26 H 1.09000 * 109.47493 * 120.00049 * 2 1 3 27 27 H 1.08004 * 119.97209 * 359.97438 * 4 3 2 28 28 H 0.97001 * 120.00273 * 185.01652 * 10 9 7 29 29 H 1.09003 * 117.50052 * 359.97438 * 15 6 5 30 30 H 1.09001 * 117.49931 * 145.01198 * 15 6 5 31 31 H 1.08999 * 117.49684 * 214.97753 * 16 6 5 32 32 H 1.08997 * 117.49728 * 359.97438 * 16 6 5 33 33 H 1.09001 * 109.46934 * 266.27437 * 18 17 5 34 34 H 1.09003 * 109.47183 * 26.27588 * 18 17 5 35 35 H 1.09003 * 109.47047 * 146.27839 * 18 17 5 36 36 H 1.07998 * 120.02903 * 180.02562 * 19 17 5 37 37 H 0.96700 * 114.00043 * 270.29806 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4586 2.0035 1.1781 5 6 2.9200 3.3067 1.1786 6 6 3.3838 3.9399 2.4651 7 6 4.8504 4.2801 2.5302 8 1 5.1766 5.1647 3.0571 9 6 5.7757 3.4622 1.9171 10 7 5.4018 2.3038 1.4195 11 14 7.5604 3.9996 1.7935 12 1 8.1111 4.2052 3.1572 13 1 8.3462 2.9502 1.0959 14 1 7.6430 5.2704 1.0295 15 6 2.7053 3.4878 3.7598 16 6 2.4091 4.8748 3.1840 17 6 2.9556 4.0305 0.0009 18 6 3.4586 5.4511 0.0053 19 6 2.5305 3.4527 -1.1794 20 6 2.0612 2.1469 -1.1816 21 8 1.6363 1.5783 -2.3404 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.4313 1.4404 2.0993 28 1 6.0639 1.6967 1.0536 29 1 1.9231 2.7327 3.6811 30 1 3.3197 3.4368 4.6587 31 1 2.8287 5.7358 3.7043 32 1 1.4325 5.0322 2.7261 33 1 2.6168 6.1343 0.1187 34 1 4.1523 5.5884 0.8348 35 1 3.9705 5.6582 -0.9346 36 1 2.5589 4.0183 -2.0990 37 1 2.3317 1.1198 -2.8317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260385489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:49 Heat of formation + Delta-G solvation = -25.841592 kcal Electronic energy + Delta-G solvation = -18404.144057 eV Core-core repulsion = 15725.050861 eV Total energy + Delta-G solvation = -2679.093195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89862 -38.73484 -36.54926 -35.12886 -34.10075 -31.68700 -30.16980 -27.58615 -27.36416 -23.93277 -23.72272 -22.88008 -21.79080 -20.53936 -18.65427 -18.20184 -16.76652 -16.57296 -16.21651 -15.87392 -15.33136 -14.78391 -14.55629 -14.41110 -14.05296 -13.80767 -13.42507 -13.30231 -13.01666 -12.81773 -12.67455 -12.47167 -12.27606 -12.22653 -12.05601 -11.85509 -11.80900 -11.24926 -11.09790 -10.92736 -10.56463 -10.13635 -9.27242 -8.80595 -7.92880 -6.09173 0.74747 0.79998 1.42785 1.45638 1.50550 2.44086 3.02286 3.07580 3.59794 3.70541 4.05955 4.12951 4.18954 4.41264 4.57584 4.60070 4.62624 4.70686 4.74161 4.91248 4.95561 4.98003 4.99640 5.07137 5.11644 5.18265 5.31299 5.33483 5.36791 5.51840 5.55936 5.69611 5.78723 5.80789 5.97045 6.27328 6.33557 6.46544 6.87094 7.05238 7.48412 8.98544 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.008880 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.150713 B = 3152.550906 C = 3377.719317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.124 4.124 4 C -0.084 4.084 5 C 0.020 3.980 6 C 0.061 3.939 7 C -0.504 4.504 8 H 0.056 0.944 9 C 0.040 3.960 10 N -0.879 5.879 11 Si 0.937 3.063 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.270 1.270 15 C -0.206 4.206 16 C -0.185 4.185 17 C -0.085 4.085 18 C -0.113 4.113 19 C -0.161 4.161 20 C 0.074 3.926 21 O -0.500 6.500 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.257 0.743 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.126 0.874 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 -1.656 -4.525 7.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 C -0.125 4.125 4 C -0.102 4.102 5 C 0.019 3.981 6 C 0.060 3.940 7 C -0.541 4.541 8 H 0.074 0.926 9 C -0.163 4.163 10 N -0.514 5.514 11 Si 0.763 3.237 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.196 1.196 15 C -0.244 4.244 16 C -0.222 4.222 17 C -0.086 4.086 18 C -0.170 4.170 19 C -0.179 4.179 20 C 0.030 3.970 21 O -0.311 6.311 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.143 -1.574 -4.527 7.792 hybrid contribution 1.716 -0.091 0.041 1.719 sum -4.428 -1.665 -4.486 6.519 Atomic orbital electron populations 1.21645 0.94030 1.02082 1.01368 1.20313 0.96679 0.91447 1.02152 1.20195 1.02008 0.97329 0.92918 1.20519 0.98567 0.94576 0.96570 1.18990 0.92137 0.92967 0.93997 1.17803 0.91915 0.97146 0.87088 1.20534 0.89582 1.09611 1.34338 0.92632 1.25485 1.01414 0.94995 0.94401 1.70104 1.34075 1.08087 1.39130 0.85947 0.81405 0.78135 0.78207 1.20090 1.21509 1.19561 1.23028 1.03843 0.96970 1.00546 1.22908 1.00142 0.93257 1.05869 1.19628 0.99225 0.97413 0.92291 1.20851 1.01178 0.91984 1.02963 1.21227 1.02622 0.95916 0.98166 1.18030 1.01364 0.91889 0.85748 1.84731 1.39248 1.73542 1.33567 0.92992 0.90782 0.93731 0.90736 0.91993 0.88332 0.93331 0.90787 0.90900 0.89765 0.90137 0.91478 0.90183 0.92508 0.85567 0.74953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.89 71.98 0.71 -2.96 16 2 C -0.07 -2.17 5.72 29.85 0.17 -1.99 16 3 C -0.12 -4.84 5.15 -19.77 -0.10 -4.94 16 4 C -0.08 -3.74 8.15 22.25 0.18 -3.56 16 5 C 0.02 0.91 3.29 -19.85 -0.07 0.84 16 6 C 0.06 2.88 1.19 -53.67 -0.06 2.82 16 7 C -0.50 -25.94 6.88 25.60 0.18 -25.77 16 8 H 0.06 2.86 7.83 -2.91 -0.02 2.83 16 9 C 0.04 2.09 5.28 84.66 0.45 2.53 16 10 N -0.88 -47.21 11.16 21.45 0.24 -46.98 16 11 Si 0.94 41.68 29.55 68.60 2.03 43.71 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 15 C -0.21 -9.05 9.43 30.62 0.29 -8.76 16 16 C -0.18 -7.65 9.94 30.62 0.30 -7.34 16 17 C -0.09 -3.71 5.85 -19.88 -0.12 -3.83 16 18 C -0.11 -4.51 9.63 71.24 0.69 -3.82 16 19 C -0.16 -6.38 9.66 22.37 0.22 -6.16 16 20 C 0.07 2.79 6.67 22.51 0.15 2.94 16 21 O -0.50 -15.56 12.62 -92.36 -1.17 -16.72 16 22 H 0.05 1.48 8.02 -2.38 -0.02 1.46 16 23 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 2.12 7.86 -2.38 -0.02 2.10 16 26 H 0.06 1.96 8.00 -2.39 -0.02 1.94 16 27 H 0.10 4.49 7.00 -2.91 -0.02 4.47 16 28 H 0.26 13.55 8.32 -92.71 -0.77 12.78 16 29 H 0.07 3.09 7.14 -2.39 -0.02 3.07 16 30 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.08 3.56 5.17 -2.39 -0.01 3.55 16 35 H 0.06 2.04 8.11 -2.39 -0.02 2.02 16 36 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.39 8.89 9.06 -74.06 -0.67 8.21 16 Total: -1.00 -57.43 304.80 4.48 -52.96 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.39 Total: 27.04 kcal Atomic # 6 Polarization: -62.99 SS G_CDS: 2.98 Total: -60.01 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.24 Total: -46.98 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -1.17 Total: -16.72 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -57.43 4.48 -52.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.114 kcal (2) G-P(sol) polarization free energy of solvation -57.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds