Wall clock time and date at job start Mon Mar 30 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99639 * 2 1 4 4 H 1.48500 * 109.46985 * 90.00245 * 3 2 1 5 5 H 1.48503 * 109.46777 * 209.99946 * 3 2 1 6 6 H 1.48496 * 109.47118 * 330.00003 * 3 2 1 7 7 C 1.39945 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99760 * 197.69192 * 7 2 1 9 9 C 1.41400 * 120.00039 * 17.69406 * 7 2 1 10 10 C 1.40731 * 120.24568 * 24.78550 * 9 7 2 11 11 C 1.37596 * 119.74840 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.24430 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50547 * 359.95154 * 12 11 10 14 14 C 1.50692 * 119.87646 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47443 * 90.00161 * 14 13 12 16 16 H 1.09005 * 109.52056 * 55.11907 * 15 14 13 17 17 C 1.53171 * 109.52800 * 175.31114 * 15 14 13 18 18 C 1.53178 * 109.03795 * 176.88714 * 17 15 14 19 19 C 1.53091 * 109.16141 * 303.01778 * 18 17 15 20 20 O 1.42907 * 109.41326 * 57.61392 * 19 18 17 21 21 C 1.42902 * 114.09372 * 298.83835 * 20 19 18 22 22 C 1.37636 * 120.24461 * 359.76835 * 13 12 11 23 23 H 0.97001 * 120.00389 * 359.97438 * 1 2 3 24 24 H 1.08009 * 120.12466 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.87758 * 179.97438 * 11 10 9 26 26 H 1.08000 * 119.74932 * 179.97438 * 12 11 10 27 27 H 1.09007 * 109.47454 * 210.00334 * 14 13 12 28 28 H 1.09003 * 109.47353 * 330.00068 * 14 13 12 29 29 H 1.08999 * 109.54522 * 296.75637 * 17 15 14 30 30 H 1.09003 * 109.54130 * 57.01971 * 17 15 14 31 31 H 1.09001 * 109.51950 * 183.11870 * 18 17 15 32 32 H 1.08992 * 109.57334 * 62.96397 * 18 17 15 33 33 H 1.08999 * 109.48332 * 297.62504 * 19 18 17 34 34 H 1.09005 * 109.48896 * 177.59400 * 19 18 17 35 35 H 1.09002 * 109.48264 * 301.17629 * 21 20 19 36 36 H 1.08999 * 109.47932 * 181.14272 * 21 20 19 37 37 H 1.07999 * 120.12862 * 180.27466 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0464 1.4001 5 1 3.5397 1.4402 -0.7001 6 1 1.4395 2.6526 -0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0497 -1.2341 0.2837 9 6 1.3512 -2.4074 -0.3733 10 6 0.2228 -2.3640 -1.2131 11 6 -0.4088 -3.5336 -1.5689 12 6 0.0623 -4.7515 -1.1028 13 6 1.1731 -4.8062 -0.2755 14 6 1.6734 -6.1376 0.2224 15 6 2.6983 -6.6991 -0.7650 16 1 3.4928 -5.9690 -0.9199 17 6 3.2936 -7.9941 -0.2041 18 6 4.2595 -8.5874 -1.2344 19 6 3.5123 -8.8142 -2.5512 20 8 2.9576 -7.5766 -3.0018 21 6 2.0116 -6.9987 -2.1001 22 6 1.8240 -3.6494 0.0886 23 1 -0.4851 0.8400 0.0004 24 1 -0.1466 -1.4163 -1.5763 25 1 -1.2752 -3.5027 -2.2130 26 1 -0.4398 -5.6645 -1.3868 27 1 2.1420 -6.0080 1.1981 28 1 0.8365 -6.8304 0.3106 29 1 3.8323 -7.7781 0.7186 30 1 2.4932 -8.7060 -0.0024 31 1 4.6457 -9.5380 -0.8664 32 1 5.0869 -7.8973 -1.3990 33 1 2.7110 -9.5363 -2.3949 34 1 4.2050 -9.1964 -3.3011 35 1 1.1905 -7.6970 -1.9378 36 1 1.6232 -6.0731 -2.5248 37 1 2.6920 -3.6946 0.7297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260388440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:44 Heat of formation + Delta-G solvation = -57.220709 kcal Electronic energy + Delta-G solvation = -17550.930158 eV Core-core repulsion = 14870.476262 eV Total energy + Delta-G solvation = -2680.453896 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.35218 -37.56023 -34.67753 -33.47398 -32.09598 -29.79904 -29.37756 -25.67147 -25.29255 -24.71263 -22.24583 -20.71187 -20.00463 -19.63753 -16.88920 -16.05128 -15.85200 -15.34227 -14.67024 -14.61302 -14.30064 -13.93345 -13.51486 -13.21310 -12.54392 -12.44394 -12.35510 -11.78362 -11.70335 -11.52294 -11.12192 -11.04023 -10.97831 -10.66487 -10.51294 -10.50415 -10.37518 -10.03574 -9.48220 -9.35575 -9.21436 -9.09576 -7.42839 -7.20767 -6.73156 -4.32945 2.80801 3.01253 3.08476 3.12680 3.24142 3.95411 4.09488 4.63175 4.89343 4.94552 4.95822 5.13367 5.33774 5.55311 5.61612 5.69413 5.78259 5.81893 5.92057 6.00901 6.05497 6.13758 6.22336 6.30985 6.47328 6.50589 6.53324 6.67291 6.97179 7.08920 7.27757 7.40965 7.42402 7.63944 7.94490 8.08259 8.13654 8.32249 8.67177 8.92839 9.01337 10.21875 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035682 B = 0.005059 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.511106 B = 5533.243274 C = 5802.204375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.111 3.889 10 C -0.165 4.165 11 C -0.105 4.105 12 C -0.238 4.238 13 C -0.065 4.065 14 C -0.064 4.064 15 C -0.113 4.113 16 H 0.080 0.920 17 C -0.118 4.118 18 C -0.155 4.155 19 C 0.059 3.941 20 O -0.385 6.385 21 C 0.066 3.934 22 C -0.217 4.217 23 H 0.279 0.721 24 H 0.116 0.884 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.107 0.893 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.165 -11.338 -1.462 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.185 1.185 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.108 3.892 10 C -0.185 4.185 11 C -0.124 4.124 12 C -0.257 4.257 13 C -0.065 4.065 14 C -0.102 4.102 15 C -0.132 4.132 16 H 0.098 0.902 17 C -0.155 4.155 18 C -0.193 4.193 19 C -0.018 4.018 20 O -0.304 6.304 21 C -0.010 4.010 22 C -0.237 4.237 23 H 0.090 0.910 24 H 0.134 0.866 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.125 0.875 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.009 -11.086 -1.621 11.900 hybrid contribution 0.190 0.704 0.420 0.841 sum 4.199 -10.382 -1.201 11.263 Atomic orbital electron populations 1.69829 1.07575 1.29101 1.35597 1.25887 0.94685 1.01228 0.92260 0.86362 0.80709 0.80777 0.79167 1.19555 1.18481 1.20119 1.19552 0.98008 0.91303 1.40621 0.90588 1.17593 0.91128 0.91957 0.88486 1.21313 0.99425 0.96753 1.00972 1.20664 0.98537 0.93392 0.99793 1.20188 1.01356 0.95970 1.08189 1.19206 0.95998 0.93109 0.98148 1.20451 0.97217 0.95006 0.97517 1.21732 0.98933 0.96724 0.95806 0.90160 1.21672 0.98554 0.97087 0.98236 1.22186 0.99337 1.01365 0.96430 1.22521 0.96722 0.86708 0.95841 1.87952 1.59981 1.37107 1.45328 1.22813 0.89767 0.98642 0.89776 1.20815 1.03439 0.92389 1.07047 0.90966 0.86637 0.89575 0.89744 0.91888 0.92387 0.91620 0.92127 0.91408 0.91111 0.93681 0.89495 0.93816 0.87461 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.83 10.97 55.55 0.61 -20.22 16 2 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 3 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.47 -12.50 9.05 -37.74 -0.34 -12.84 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.11 2.98 5.57 -106.82 -0.60 2.38 16 10 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 11 C -0.11 -2.49 10.02 -39.66 -0.40 -2.89 16 12 C -0.24 -5.20 8.03 -39.29 -0.32 -5.52 16 13 C -0.06 -1.39 4.71 -104.71 -0.49 -1.89 16 14 C -0.06 -1.10 4.84 -27.89 -0.13 -1.24 16 15 C -0.11 -1.76 2.38 -90.49 -0.22 -1.97 16 16 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 17 C -0.12 -1.47 5.31 -26.55 -0.14 -1.61 16 18 C -0.16 -1.74 6.14 -26.59 -0.16 -1.91 16 19 C 0.06 0.70 6.84 37.20 0.25 0.96 16 20 O -0.38 -6.08 10.77 -35.23 -0.38 -6.46 16 21 C 0.07 1.05 5.61 37.20 0.21 1.26 16 22 C -0.22 -5.31 9.44 -38.87 -0.37 -5.67 16 23 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 24 H 0.12 3.14 6.18 -52.48 -0.32 2.82 16 25 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 26 H 0.08 1.65 8.03 -52.49 -0.42 1.22 16 27 H 0.06 1.04 8.08 -51.92 -0.42 0.62 16 28 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 1.94 6.44 -51.93 -0.33 1.60 16 37 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -27.68 298.70 -9.12 -36.80 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.70 Total: 5.30 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: -3.13 Total: -33.75 kcal Atomic # 7 Polarization: -20.83 SS G_CDS: 0.61 Total: -20.22 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.38 Total: -6.46 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.68 -9.12 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.420 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds