Wall clock time and date at job start Mon Mar 30 2020 05:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99639 * 2 1 4 4 H 1.48500 * 109.46985 * 90.00245 * 3 2 1 5 5 H 1.48503 * 109.46777 * 209.99946 * 3 2 1 6 6 H 1.48496 * 109.47118 * 330.00003 * 3 2 1 7 7 C 1.39945 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99760 * 197.69192 * 7 2 1 9 9 C 1.41400 * 120.00039 * 17.69406 * 7 2 1 10 10 C 1.40731 * 120.24568 * 24.78550 * 9 7 2 11 11 C 1.37596 * 119.74840 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.24430 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50547 * 359.95154 * 12 11 10 14 14 C 1.50692 * 119.87646 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47443 * 90.00161 * 14 13 12 16 16 H 1.09005 * 109.52056 * 55.11907 * 15 14 13 17 17 C 1.53171 * 109.52800 * 175.31114 * 15 14 13 18 18 C 1.53178 * 109.03795 * 176.88714 * 17 15 14 19 19 C 1.53091 * 109.16141 * 303.01778 * 18 17 15 20 20 O 1.42907 * 109.41326 * 57.61392 * 19 18 17 21 21 C 1.42902 * 114.09372 * 298.83835 * 20 19 18 22 22 C 1.37636 * 120.24461 * 359.76835 * 13 12 11 23 23 H 0.97001 * 120.00389 * 359.97438 * 1 2 3 24 24 H 1.08009 * 120.12466 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.87758 * 179.97438 * 11 10 9 26 26 H 1.08000 * 119.74932 * 179.97438 * 12 11 10 27 27 H 1.09007 * 109.47454 * 210.00334 * 14 13 12 28 28 H 1.09003 * 109.47353 * 330.00068 * 14 13 12 29 29 H 1.08999 * 109.54522 * 296.75637 * 17 15 14 30 30 H 1.09003 * 109.54130 * 57.01971 * 17 15 14 31 31 H 1.09001 * 109.51950 * 183.11870 * 18 17 15 32 32 H 1.08992 * 109.57334 * 62.96397 * 18 17 15 33 33 H 1.08999 * 109.48332 * 297.62504 * 19 18 17 34 34 H 1.09005 * 109.48896 * 177.59400 * 19 18 17 35 35 H 1.09002 * 109.48264 * 301.17629 * 21 20 19 36 36 H 1.08999 * 109.47932 * 181.14272 * 21 20 19 37 37 H 1.07999 * 120.12862 * 180.27466 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0464 1.4001 5 1 3.5397 1.4402 -0.7001 6 1 1.4395 2.6526 -0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0497 -1.2341 0.2837 9 6 1.3512 -2.4074 -0.3733 10 6 0.2228 -2.3640 -1.2131 11 6 -0.4088 -3.5336 -1.5689 12 6 0.0623 -4.7515 -1.1028 13 6 1.1731 -4.8062 -0.2755 14 6 1.6734 -6.1376 0.2224 15 6 2.6983 -6.6991 -0.7650 16 1 3.4928 -5.9690 -0.9199 17 6 3.2936 -7.9941 -0.2041 18 6 4.2595 -8.5874 -1.2344 19 6 3.5123 -8.8142 -2.5512 20 8 2.9576 -7.5766 -3.0018 21 6 2.0116 -6.9987 -2.1001 22 6 1.8240 -3.6494 0.0886 23 1 -0.4851 0.8400 0.0004 24 1 -0.1466 -1.4163 -1.5763 25 1 -1.2752 -3.5027 -2.2130 26 1 -0.4398 -5.6645 -1.3868 27 1 2.1420 -6.0080 1.1981 28 1 0.8365 -6.8304 0.3106 29 1 3.8323 -7.7781 0.7186 30 1 2.4932 -8.7060 -0.0024 31 1 4.6457 -9.5380 -0.8664 32 1 5.0869 -7.8973 -1.3990 33 1 2.7110 -9.5363 -2.3949 34 1 4.2050 -9.1964 -3.3011 35 1 1.1905 -7.6970 -1.9378 36 1 1.6232 -6.0731 -2.5248 37 1 2.6920 -3.6946 0.7297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260388440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:43 Heat of formation + Delta-G solvation = -71.075384 kcal Electronic energy + Delta-G solvation = -17551.530942 eV Core-core repulsion = 14870.476262 eV Total energy + Delta-G solvation = -2681.054680 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56639 -39.27706 -36.21840 -35.06646 -33.32422 -31.71465 -30.89639 -27.27294 -27.00379 -25.85121 -23.49165 -22.56440 -21.60093 -20.89559 -18.78442 -17.24268 -17.12282 -17.01244 -16.38175 -15.81443 -15.58107 -15.35193 -15.14463 -14.68813 -14.21257 -13.77539 -13.48613 -13.43173 -13.24436 -13.07494 -12.83262 -12.64851 -12.26618 -12.11326 -12.04679 -11.83796 -11.81098 -11.27464 -11.22345 -11.04263 -10.97526 -10.33148 -9.35583 -9.06954 -8.63245 -6.34182 1.00121 1.12036 1.36401 1.48135 1.53953 2.20321 2.72682 3.04015 3.70614 3.83657 3.88587 3.97792 4.08561 4.32616 4.38545 4.47324 4.55425 4.62624 4.72290 4.76391 4.81252 4.87308 4.94805 5.05264 5.06806 5.12889 5.14200 5.19482 5.31302 5.35626 5.46897 5.56590 5.74976 6.06012 6.13484 6.22980 6.33989 6.41869 6.72483 6.95758 7.06916 8.34176 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035682 B = 0.005059 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.511106 B = 5533.243274 C = 5802.204375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.078 3.922 10 C -0.196 4.196 11 C -0.111 4.111 12 C -0.231 4.231 13 C -0.058 4.058 14 C -0.059 4.059 15 C -0.108 4.108 16 H 0.052 0.948 17 C -0.114 4.114 18 C -0.152 4.152 19 C 0.050 3.950 20 O -0.410 6.410 21 C 0.070 3.930 22 C -0.237 4.237 23 H 0.287 0.713 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -13.388 -1.231 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.189 1.189 7 C -0.535 4.535 8 H 0.090 0.910 9 C 0.076 3.924 10 C -0.215 4.215 11 C -0.129 4.129 12 C -0.250 4.250 13 C -0.058 4.058 14 C -0.097 4.097 15 C -0.127 4.127 16 H 0.071 0.929 17 C -0.151 4.151 18 C -0.190 4.190 19 C -0.026 4.026 20 O -0.329 6.329 21 C -0.007 4.007 22 C -0.257 4.257 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.126 0.874 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.338 -13.159 -1.389 13.925 hybrid contribution 0.064 1.176 0.311 1.218 sum 4.402 -11.983 -1.078 12.811 Atomic orbital electron populations 1.69884 1.08999 1.30425 1.36096 1.26736 0.95475 1.04450 0.91215 0.85242 0.79088 0.76045 0.79552 1.18540 1.18480 1.18945 1.19801 0.98154 0.92743 1.42828 0.91048 1.17971 0.91962 0.93157 0.89297 1.21261 1.00577 0.97086 1.02620 1.20981 0.98920 0.93277 0.99731 1.20575 1.01003 0.96480 1.06901 1.19668 0.95000 0.94458 0.96653 1.20481 0.98439 0.92773 0.97986 1.21629 0.97688 0.97814 0.95547 0.92944 1.21657 0.99322 0.95500 0.98652 1.22180 0.98564 1.02461 0.95774 1.22818 0.97598 0.85404 0.96768 1.87915 1.60181 1.38971 1.45867 1.22660 0.90488 0.98004 0.89533 1.21003 1.04044 0.92883 1.07745 0.90234 0.88551 0.87412 0.86467 0.91279 0.90072 0.90909 0.90343 0.88418 0.92297 0.91999 0.87760 0.91966 0.90448 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.82 10.97 21.83 0.24 -44.58 16 2 C 0.04 1.86 5.14 85.26 0.44 2.30 16 3 Si 0.98 39.52 29.59 68.60 2.03 41.55 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.51 -28.46 9.05 23.46 0.21 -28.25 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.87 16 9 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 10 C -0.20 -10.73 8.70 22.73 0.20 -10.53 16 11 C -0.11 -5.26 10.02 22.22 0.22 -5.04 16 12 C -0.23 -9.82 8.03 22.46 0.18 -9.64 16 13 C -0.06 -2.46 4.71 -19.92 -0.09 -2.56 16 14 C -0.06 -1.91 4.84 29.84 0.14 -1.77 16 15 C -0.11 -3.17 2.38 -10.71 -0.03 -3.19 16 16 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 17 C -0.11 -2.46 5.31 30.71 0.16 -2.30 16 18 C -0.15 -2.92 6.14 30.68 0.19 -2.73 16 19 C 0.05 1.04 6.84 72.01 0.49 1.53 16 20 O -0.41 -12.28 10.77 -148.98 -1.60 -13.89 16 21 C 0.07 2.09 5.61 72.01 0.40 2.49 16 22 C -0.24 -11.92 9.44 22.73 0.21 -11.70 16 23 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 24 H 0.10 5.54 6.18 -2.91 -0.02 5.52 16 25 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 26 H 0.12 4.21 8.03 -2.91 -0.02 4.19 16 27 H 0.07 2.15 8.08 -2.38 -0.02 2.13 16 28 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 2.75 6.44 -2.39 -0.02 2.74 16 37 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -62.30 298.70 4.32 -57.98 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 1.03 Total: 26.04 kcal Atomic # 6 Polarization: -69.72 SS G_CDS: 2.62 Total: -67.10 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.24 Total: -44.58 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.60 Total: -13.89 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -62.30 4.32 -57.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.097 kcal (2) G-P(sol) polarization free energy of solvation -62.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds