Wall clock time and date at job start Mon Mar 30 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47110 * 2 1 4 4 C 1.50702 * 109.46825 * 119.99633 * 2 1 3 5 5 C 1.38640 * 119.74989 * 89.72643 * 4 2 1 6 6 C 1.37618 * 120.24742 * 179.71870 * 5 4 2 7 7 C 1.40713 * 119.74433 * 0.53156 * 6 5 4 8 8 C 1.41401 * 120.24362 * 179.71971 * 7 6 5 9 9 H 1.08001 * 119.99886 * 204.40362 * 8 7 6 10 10 C 1.39947 * 119.99850 * 24.41039 * 8 7 6 11 11 N 1.30823 * 119.99801 * 17.84584 * 10 8 7 12 12 Si 1.86796 * 119.99883 * 197.84270 * 10 8 7 13 13 H 1.48495 * 109.47188 * 60.00175 * 12 10 8 14 14 H 1.48499 * 109.46978 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47426 * 300.00004 * 12 10 8 16 16 C 1.40716 * 119.51199 * 359.74661 * 7 6 5 17 17 C 1.37616 * 119.74514 * 359.97438 * 16 7 6 18 18 C 1.53001 * 109.47519 * 239.99484 * 2 1 3 19 19 C 1.53776 * 113.61441 * 157.49820 * 18 2 1 20 20 C 1.53785 * 87.08170 * 220.02090 * 19 18 2 21 21 C 1.53778 * 113.61133 * 60.00188 * 18 2 1 22 22 H 1.08997 * 109.46585 * 60.00729 * 1 2 3 23 23 H 1.09007 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47149 * 300.00395 * 1 2 3 25 25 H 0.96698 * 113.99775 * 179.97438 * 3 2 1 26 26 H 1.07992 * 119.87329 * 359.97438 * 5 4 2 27 27 H 1.08001 * 120.12922 * 180.28010 * 6 5 4 28 28 H 0.97008 * 119.99832 * 179.97438 * 11 10 8 29 29 H 1.08006 * 120.12815 * 179.97438 * 16 7 6 30 30 H 1.08005 * 119.87292 * 179.97438 * 17 16 7 31 31 H 1.08997 * 112.84886 * 288.80769 * 18 2 1 32 32 H 1.08995 * 113.61263 * 334.57120 * 19 18 2 33 33 H 1.09000 * 113.61148 * 105.47106 * 19 18 2 34 34 H 1.09003 * 113.61020 * 270.88827 * 20 19 18 35 35 H 1.08998 * 113.68822 * 139.99272 * 20 19 18 36 36 H 1.09002 * 113.61297 * 254.53160 * 21 18 2 37 37 H 1.08997 * 113.61745 * 25.34846 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.2562 -2.0780 1.1922 6 6 2.7203 -2.7361 2.3082 7 6 2.9569 -2.0173 3.4945 8 6 3.4281 -2.6838 4.6491 9 1 3.2440 -2.2649 5.6274 10 6 4.1331 -3.8862 4.5242 11 7 4.6594 -4.2194 3.3737 12 14 4.3227 -5.0155 6.0001 13 1 2.9807 -5.4345 6.4783 14 1 5.1058 -6.2148 5.6083 15 1 5.0327 -4.2946 7.0870 16 6 2.7206 -0.6304 3.5235 17 6 2.2620 0.0078 2.3939 18 6 2.0402 -0.7213 -1.2492 19 6 3.4728 -0.3278 -1.6459 20 6 2.9924 -0.3575 -3.1065 21 6 1.5813 -0.0724 -2.5657 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 2.9703 1.4236 0.0004 26 1 2.0696 -2.6283 0.2819 27 1 2.8983 -3.8008 2.2748 28 1 5.1485 -5.0527 3.2872 29 1 2.8985 -0.0690 4.4289 30 1 2.0796 1.0722 2.4140 31 1 1.8760 -1.7983 -1.2127 32 1 3.7639 0.6647 -1.3021 33 1 4.2152 -1.0916 -1.4148 34 1 3.0899 -1.3352 -3.5783 35 1 3.3972 0.4496 -3.7171 36 1 0.7968 -0.6302 -3.0771 37 1 1.3540 0.9895 -2.4731 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260395854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:41 Heat of formation + Delta-G solvation = -23.439728 kcal Electronic energy + Delta-G solvation = -17951.044894 eV Core-core repulsion = 15272.055852 eV Total energy + Delta-G solvation = -2678.989043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74692 -37.25421 -35.44061 -33.58371 -31.36440 -29.26566 -28.95541 -25.95170 -24.98521 -24.81033 -21.67044 -20.98061 -19.73646 -18.65363 -17.30415 -16.73683 -15.82473 -15.16315 -14.83333 -13.99116 -13.81898 -13.19106 -12.96380 -12.82764 -12.25885 -12.03110 -11.92999 -11.90313 -11.80660 -11.45037 -11.23838 -11.11548 -10.92425 -10.77262 -10.64723 -10.25769 -10.21289 -9.90075 -9.62277 -9.37318 -9.12898 -8.92249 -7.45098 -7.29719 -6.77235 -4.35858 2.75924 3.04958 3.07530 3.08801 3.20205 3.91859 4.58027 4.79507 4.89238 4.96539 5.00166 5.14071 5.59653 5.67827 5.81162 5.87094 5.93904 6.00039 6.06912 6.10851 6.26889 6.28859 6.33997 6.43734 6.47381 6.56867 6.67144 6.83015 6.97091 7.06912 7.27401 7.37850 7.62092 7.86966 7.99573 8.05402 8.29528 8.33455 8.63686 8.89249 8.97677 10.17051 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.005800 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.453938 B = 4826.782118 C = 5214.375976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.200 3.800 3 O -0.564 6.564 4 C -0.240 4.240 5 C -0.092 4.092 6 C -0.167 4.167 7 C 0.112 3.888 8 C -0.464 4.464 9 H 0.076 0.924 10 C 0.077 3.923 11 N -0.793 5.793 12 Si 0.907 3.093 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.266 1.266 16 C -0.229 4.229 17 C -0.076 4.076 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.142 4.142 21 C -0.134 4.134 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.370 0.630 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.280 0.720 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 3.429 -7.972 9.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.160 3.840 3 O -0.371 6.371 4 C -0.241 4.241 5 C -0.110 4.110 6 C -0.186 4.186 7 C 0.109 3.891 8 C -0.493 4.493 9 H 0.094 0.906 10 C -0.141 4.141 11 N -0.419 5.419 12 Si 0.732 3.268 13 H -0.188 1.188 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.249 4.249 17 C -0.094 4.094 18 C -0.147 4.147 19 C -0.171 4.171 20 C -0.180 4.180 21 C -0.171 4.171 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.218 0.782 26 H 0.106 0.894 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.281 3.367 -8.084 9.351 hybrid contribution 0.874 -0.823 0.705 1.392 sum -2.407 2.544 -7.378 8.167 Atomic orbital electron populations 1.21656 0.93618 1.01596 1.01369 1.19496 0.93034 0.80458 0.90977 1.86416 1.26417 1.27320 1.96951 1.19524 1.14861 0.94407 0.95311 1.20555 0.99940 0.93423 0.97111 1.21293 1.04137 0.99757 0.93459 1.17638 0.87948 0.90616 0.92879 1.19575 1.30803 1.04702 0.94250 0.90556 1.25902 0.93276 0.97873 0.97065 1.69823 1.24360 1.22085 1.25589 0.86384 0.79315 0.79300 0.81826 1.18830 1.20351 1.19016 1.20975 1.11832 0.94598 0.97457 1.20330 0.98750 0.97489 0.92826 1.23243 0.96346 1.00653 0.94500 1.22844 0.97018 1.01698 0.95586 1.22783 0.97385 1.01192 0.96603 1.22912 0.96208 1.01311 0.96689 0.93117 0.91757 0.92419 0.78181 0.89400 0.86578 0.90871 0.89193 0.88957 0.88628 0.90295 0.91450 0.90702 0.92049 0.92309 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.63 37.16 0.32 -1.72 16 2 C 0.20 3.49 0.81 -91.77 -0.07 3.41 16 3 O -0.56 -9.60 11.21 -35.23 -0.39 -10.00 16 4 C -0.24 -5.07 4.82 -104.33 -0.50 -5.57 16 5 C -0.09 -2.08 9.12 -39.66 -0.36 -2.44 16 6 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 7 C 0.11 2.97 5.57 -106.82 -0.60 2.38 16 8 C -0.46 -12.35 9.05 -37.74 -0.34 -12.69 16 9 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 10 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 11 N -0.79 -20.43 10.95 55.55 0.61 -19.82 16 12 Si 0.91 18.65 29.60 -169.99 -5.03 13.61 16 13 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 14 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 16 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 17 C -0.08 -1.70 9.32 -39.66 -0.37 -2.07 16 18 C -0.13 -1.99 2.60 -89.81 -0.23 -2.22 16 19 C -0.13 -1.94 7.40 -25.92 -0.19 -2.13 16 20 C -0.14 -1.76 8.08 -25.92 -0.21 -1.97 16 21 C -0.13 -1.76 6.58 -25.92 -0.17 -1.93 16 22 H 0.05 0.73 7.45 -51.93 -0.39 0.35 16 23 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.37 5.67 6.81 45.56 0.31 5.98 16 26 H 0.09 1.80 5.98 -52.49 -0.31 1.49 16 27 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 28 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 29 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 30 H 0.09 1.93 7.47 -52.48 -0.39 1.54 16 31 H 0.10 1.55 6.08 -51.93 -0.32 1.23 16 32 H 0.08 1.09 5.90 -51.93 -0.31 0.78 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.13 7.77 -51.93 -0.40 0.73 16 LS Contribution 295.40 15.07 4.45 4.45 Total: -1.00 -27.01 295.40 -8.54 -35.55 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -4.64 Total: 11.99 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: -3.54 Total: -35.79 kcal Atomic # 7 Polarization: -20.43 SS G_CDS: 0.61 Total: -19.82 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.39 Total: -10.00 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.01 -8.54 -35.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.113 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds