Wall clock time and date at job start Mon Mar 30 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47110 * 2 1 4 4 C 1.50702 * 109.46825 * 119.99633 * 2 1 3 5 5 C 1.38640 * 119.74989 * 89.72643 * 4 2 1 6 6 C 1.37618 * 120.24742 * 179.71870 * 5 4 2 7 7 C 1.40713 * 119.74433 * 0.53156 * 6 5 4 8 8 C 1.41401 * 120.24362 * 179.71971 * 7 6 5 9 9 H 1.08001 * 119.99886 * 204.40362 * 8 7 6 10 10 C 1.39947 * 119.99850 * 24.41039 * 8 7 6 11 11 N 1.30823 * 119.99801 * 17.84584 * 10 8 7 12 12 Si 1.86796 * 119.99883 * 197.84270 * 10 8 7 13 13 H 1.48495 * 109.47188 * 60.00175 * 12 10 8 14 14 H 1.48499 * 109.46978 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47426 * 300.00004 * 12 10 8 16 16 C 1.40716 * 119.51199 * 359.74661 * 7 6 5 17 17 C 1.37616 * 119.74514 * 359.97438 * 16 7 6 18 18 C 1.53001 * 109.47519 * 239.99484 * 2 1 3 19 19 C 1.53776 * 113.61441 * 157.49820 * 18 2 1 20 20 C 1.53785 * 87.08170 * 220.02090 * 19 18 2 21 21 C 1.53778 * 113.61133 * 60.00188 * 18 2 1 22 22 H 1.08997 * 109.46585 * 60.00729 * 1 2 3 23 23 H 1.09007 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47149 * 300.00395 * 1 2 3 25 25 H 0.96698 * 113.99775 * 179.97438 * 3 2 1 26 26 H 1.07992 * 119.87329 * 359.97438 * 5 4 2 27 27 H 1.08001 * 120.12922 * 180.28010 * 6 5 4 28 28 H 0.97008 * 119.99832 * 179.97438 * 11 10 8 29 29 H 1.08006 * 120.12815 * 179.97438 * 16 7 6 30 30 H 1.08005 * 119.87292 * 179.97438 * 17 16 7 31 31 H 1.08997 * 112.84886 * 288.80769 * 18 2 1 32 32 H 1.08995 * 113.61263 * 334.57120 * 19 18 2 33 33 H 1.09000 * 113.61148 * 105.47106 * 19 18 2 34 34 H 1.09003 * 113.61020 * 270.88827 * 20 19 18 35 35 H 1.08998 * 113.68822 * 139.99272 * 20 19 18 36 36 H 1.09002 * 113.61297 * 254.53160 * 21 18 2 37 37 H 1.08997 * 113.61745 * 25.34846 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.2562 -2.0780 1.1922 6 6 2.7203 -2.7361 2.3082 7 6 2.9569 -2.0173 3.4945 8 6 3.4281 -2.6838 4.6491 9 1 3.2440 -2.2649 5.6274 10 6 4.1331 -3.8862 4.5242 11 7 4.6594 -4.2194 3.3737 12 14 4.3227 -5.0155 6.0001 13 1 2.9807 -5.4345 6.4783 14 1 5.1058 -6.2148 5.6083 15 1 5.0327 -4.2946 7.0870 16 6 2.7206 -0.6304 3.5235 17 6 2.2620 0.0078 2.3939 18 6 2.0402 -0.7213 -1.2492 19 6 3.4728 -0.3278 -1.6459 20 6 2.9924 -0.3575 -3.1065 21 6 1.5813 -0.0724 -2.5657 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 2.9703 1.4236 0.0004 26 1 2.0696 -2.6283 0.2819 27 1 2.8983 -3.8008 2.2748 28 1 5.1485 -5.0527 3.2872 29 1 2.8985 -0.0690 4.4289 30 1 2.0796 1.0722 2.4140 31 1 1.8760 -1.7983 -1.2127 32 1 3.7639 0.6647 -1.3021 33 1 4.2152 -1.0916 -1.4148 34 1 3.0899 -1.3352 -3.5783 35 1 3.3972 0.4496 -3.7171 36 1 0.7968 -0.6302 -3.0771 37 1 1.3540 0.9895 -2.4731 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260395854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:41 Heat of formation + Delta-G solvation = -37.484961 kcal Electronic energy + Delta-G solvation = -17951.653941 eV Core-core repulsion = 15272.055852 eV Total energy + Delta-G solvation = -2679.598090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09492 -38.94785 -36.82155 -35.40090 -32.92766 -31.11063 -30.68058 -27.44723 -26.34454 -26.08948 -23.27244 -22.80811 -21.25465 -19.91692 -19.21407 -18.13934 -17.30951 -16.88540 -16.08637 -15.69003 -15.28611 -14.87939 -14.62724 -14.20636 -13.88615 -13.63956 -13.36806 -13.27149 -13.16601 -12.86826 -12.80181 -12.63363 -12.58086 -12.33742 -12.03972 -11.77644 -11.51123 -11.36492 -11.10608 -11.00017 -10.90492 -10.38433 -9.34970 -9.19271 -8.64321 -6.33916 0.95975 1.15430 1.36635 1.47519 1.52774 2.19765 2.71133 3.47745 3.68498 3.76641 3.85576 3.87044 4.03698 4.34752 4.38715 4.47944 4.59672 4.76030 4.84639 4.90392 4.94548 4.98420 5.04116 5.10714 5.12785 5.15359 5.18008 5.34736 5.38730 5.47528 5.49295 5.68842 5.72238 5.99265 6.10234 6.20030 6.40122 6.70399 6.92100 6.94290 7.04067 8.32221 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.005800 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.453938 B = 4826.782118 C = 5214.375976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.203 3.797 3 O -0.564 6.564 4 C -0.224 4.224 5 C -0.091 4.091 6 C -0.190 4.190 7 C 0.078 3.922 8 C -0.504 4.504 9 H 0.072 0.928 10 C 0.037 3.963 11 N -0.825 5.825 12 Si 0.981 3.019 13 H -0.261 1.261 14 H -0.266 1.266 15 H -0.260 1.260 16 C -0.246 4.246 17 C -0.079 4.079 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.131 4.131 21 C -0.122 4.122 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.377 0.623 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.288 0.712 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 3.859 -9.408 10.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.162 3.838 3 O -0.372 6.372 4 C -0.225 4.225 5 C -0.109 4.109 6 C -0.210 4.210 7 C 0.076 3.924 8 C -0.534 4.534 9 H 0.090 0.910 10 C -0.178 4.178 11 N -0.451 5.451 12 Si 0.801 3.199 13 H -0.186 1.186 14 H -0.190 1.190 15 H -0.185 1.185 16 C -0.266 4.266 17 C -0.098 4.098 18 C -0.155 4.155 19 C -0.179 4.179 20 C -0.168 4.168 21 C -0.160 4.160 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.226 0.774 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.788 3.815 -9.532 10.943 hybrid contribution 1.001 -0.840 1.054 1.679 sum -2.787 2.975 -8.478 9.407 Atomic orbital electron populations 1.21664 0.92470 1.02072 1.02051 1.19523 0.93836 0.80489 0.89914 1.86412 1.27228 1.26763 1.96846 1.20017 1.11995 0.93978 0.96510 1.20795 0.98917 0.94305 0.96921 1.21277 1.05945 0.99222 0.94537 1.17976 0.89124 0.91663 0.93613 1.19808 1.32800 1.06610 0.94172 0.91004 1.26726 0.92273 0.98697 1.00132 1.69873 1.24860 1.22795 1.27531 0.85277 0.79359 0.77283 0.77943 1.18578 1.19030 1.18457 1.21155 1.12623 0.94269 0.98540 1.20572 0.98162 0.98455 0.92563 1.23235 0.97388 1.00112 0.94724 1.22919 0.96008 1.01436 0.97573 1.22743 0.96485 1.02275 0.95305 1.22844 0.97088 1.01215 0.94808 0.90802 0.91444 0.93420 0.77352 0.87282 0.88285 0.90168 0.89082 0.87136 0.89455 0.89724 0.93132 0.89964 0.90418 0.90872 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 8.63 71.98 0.62 -3.14 16 2 C 0.20 6.61 0.81 -11.54 -0.01 6.60 16 3 O -0.56 -17.77 11.21 -148.98 -1.67 -19.44 16 4 C -0.22 -9.27 4.82 -19.67 -0.09 -9.37 16 5 C -0.09 -4.13 9.12 22.22 0.20 -3.93 16 6 C -0.19 -10.09 8.70 22.73 0.20 -9.89 16 7 C 0.08 4.34 5.57 -21.29 -0.12 4.22 16 8 C -0.50 -27.94 9.05 23.46 0.21 -27.72 16 9 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 10 C 0.04 1.87 5.14 85.26 0.44 2.31 16 11 N -0.82 -43.63 10.95 21.83 0.24 -43.39 16 12 Si 0.98 38.77 29.60 68.60 2.03 40.80 16 13 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 14 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 15 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 16 C -0.25 -12.50 9.80 22.73 0.22 -12.28 16 17 C -0.08 -3.55 9.32 22.22 0.21 -3.34 16 18 C -0.14 -3.87 2.60 -10.27 -0.03 -3.90 16 19 C -0.14 -3.81 7.40 31.12 0.23 -3.58 16 20 C -0.13 -2.80 8.08 31.12 0.25 -2.55 16 21 C -0.12 -2.76 6.58 31.12 0.20 -2.56 16 22 H 0.07 1.88 7.45 -2.39 -0.02 1.86 16 23 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.38 10.69 6.81 -74.06 -0.50 10.19 16 26 H 0.11 4.40 5.98 -2.91 -0.02 4.39 16 27 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 28 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 29 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.11 4.49 7.47 -2.91 -0.02 4.47 16 31 H 0.09 2.64 6.08 -2.39 -0.01 2.63 16 32 H 0.08 2.15 5.90 -2.39 -0.01 2.13 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.95 7.77 -2.39 -0.02 1.93 16 Total: -1.00 -58.94 295.40 3.70 -55.24 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.56 Total: 35.91 kcal Atomic # 6 Polarization: -71.66 SS G_CDS: 2.54 Total: -69.12 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.24 Total: -43.39 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -1.67 Total: -19.44 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -58.94 3.70 -55.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.758 kcal (2) G-P(sol) polarization free energy of solvation -58.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds