Wall clock time and date at job start Mon Mar 30 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.71033 * 2 1 4 4 C 1.53328 * 109.68037 * 239.46273 * 2 1 3 5 5 C 1.52736 * 108.36897 * 170.36218 * 4 2 1 6 6 C 1.50632 * 110.57168 * 51.11608 * 5 4 2 7 7 C 1.38922 * 117.73963 * 162.47293 * 6 5 4 8 8 C 1.37936 * 120.54229 * 179.66968 * 7 6 5 9 9 C 1.38261 * 119.76909 * 0.02580 * 8 7 6 10 10 C 1.37936 * 119.77708 * 0.10621 * 9 8 7 11 11 C 1.37660 * 122.57449 * 342.36449 * 6 5 4 12 12 C 1.50629 * 122.56988 * 0.43945 * 11 6 5 13 13 O 1.42906 * 109.25173 * 102.70878 * 12 11 6 14 14 C 1.50698 * 109.25726 * 222.17575 * 12 11 6 15 15 H 1.08002 * 119.99867 * 34.32169 * 14 12 11 16 16 C 1.37876 * 120.00038 * 214.32678 * 14 12 11 17 17 N 1.31515 * 120.00049 * 353.21473 * 16 14 12 18 18 Si 1.86800 * 119.99827 * 173.48794 * 16 14 12 19 19 H 1.48498 * 109.47458 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47197 * 119.99815 * 18 16 14 21 21 H 1.48506 * 109.46996 * 240.00073 * 18 16 14 22 22 H 1.09006 * 109.47195 * 299.46652 * 1 2 3 23 23 H 1.08996 * 109.47651 * 59.46427 * 1 2 3 24 24 H 1.09000 * 109.47314 * 179.47000 * 1 2 3 25 25 H 1.08990 * 109.47335 * 180.53776 * 3 2 1 26 26 H 1.09001 * 109.47142 * 300.54043 * 3 2 1 27 27 H 1.09001 * 109.47352 * 60.53318 * 3 2 1 28 28 H 1.09003 * 109.68454 * 50.64896 * 4 2 1 29 29 H 1.08997 * 109.72103 * 290.10695 * 4 2 1 30 30 H 1.09001 * 109.25443 * 290.83998 * 5 4 2 31 31 H 1.08995 * 109.25716 * 171.39898 * 5 4 2 32 32 H 1.07993 * 119.72666 * 359.69290 * 7 6 5 33 33 H 1.07999 * 120.11791 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.11171 * 180.12939 * 9 8 7 35 35 H 1.08003 * 119.72680 * 179.97438 * 10 9 8 36 36 H 0.96696 * 113.99591 * 59.46363 * 13 12 11 37 37 H 0.97000 * 119.99892 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0460 1.4403 0.0000 4 6 2.0464 -0.7336 -1.2435 5 6 3.5541 -0.5103 -1.3426 6 6 4.2256 -0.8444 -0.0363 7 6 5.5984 -1.0571 -0.0508 8 6 6.2731 -1.3598 1.1135 9 6 5.5783 -1.4530 2.3052 10 6 4.2148 -1.2448 2.3213 11 6 3.5332 -0.9412 1.1495 12 6 2.0444 -0.7307 1.2387 13 8 1.3944 -1.9993 1.3404 14 6 1.7307 0.0880 2.4645 15 1 2.4165 0.8558 2.7910 16 6 0.5684 -0.1433 3.1691 17 7 -0.3290 -0.9825 2.7000 18 14 0.2648 0.7412 4.7861 19 1 1.4161 1.6290 5.0886 20 1 -0.9734 1.5541 4.6808 21 1 0.1107 -0.2569 5.8749 22 1 -0.3634 0.5055 0.8948 23 1 -0.3634 0.5221 -0.8851 24 1 -0.3634 -1.0276 -0.0095 25 1 3.1358 1.4358 -0.0096 26 1 1.6769 1.9585 -0.8851 27 1 1.6926 1.9529 0.8947 28 1 1.5573 -0.3370 -2.1333 29 1 1.8381 -1.7997 -1.1545 30 1 3.7474 0.5337 -1.5894 31 1 3.9607 -1.1462 -2.1288 32 1 6.1417 -0.9846 -0.9813 33 1 7.3405 -1.5235 1.0944 34 1 6.1014 -1.6876 3.2205 35 1 3.6728 -1.3182 3.2525 36 1 1.6645 -2.5190 2.1098 37 1 -1.1469 -1.1449 3.1955 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260396994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:54 Heat of formation + Delta-G solvation = -26.776333 kcal Electronic energy + Delta-G solvation = -19200.267358 eV Core-core repulsion = 16521.133629 eV Total energy + Delta-G solvation = -2679.133729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76015 -36.73716 -34.45833 -32.10704 -31.30950 -30.31852 -28.33685 -26.15583 -25.76470 -24.09837 -22.27368 -20.80525 -20.44636 -17.21942 -16.63495 -16.02812 -14.86397 -14.65283 -14.50597 -14.25496 -13.58910 -13.23827 -13.15877 -12.53231 -12.10835 -11.97275 -11.62645 -11.38041 -11.23491 -11.02263 -10.87215 -10.82584 -10.61326 -10.53670 -10.24711 -10.17973 -9.95719 -9.45287 -9.31253 -8.78844 -8.37055 -8.08709 -8.01131 -7.81229 -5.88605 -4.08753 2.08040 2.14905 3.25412 3.35871 3.39559 4.38107 4.52282 5.22935 5.36089 5.49220 5.66542 5.72695 5.76267 5.88442 5.94380 6.16268 6.21473 6.31079 6.32592 6.52353 6.57232 6.65190 6.74590 6.78255 6.80833 6.91208 7.06693 7.13966 7.17492 7.27309 7.35301 7.39003 7.64594 7.79883 7.84655 7.89223 8.03265 8.24207 8.82043 9.43186 9.64813 11.03161 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.011339 C = 0.008810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.918708 B = 2468.834501 C = 3177.553163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.033 4.033 3 C -0.128 4.128 4 C -0.113 4.113 5 C -0.076 4.076 6 C -0.079 4.079 7 C -0.138 4.138 8 C -0.138 4.138 9 C -0.142 4.142 10 C -0.096 4.096 11 C -0.068 4.068 12 C 0.294 3.706 13 O -0.526 6.526 14 C -0.551 4.551 15 H 0.057 0.943 16 C 0.080 3.920 17 N -0.837 5.837 18 Si 0.873 3.127 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.072 0.928 23 H 0.006 0.994 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.351 0.649 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.748 -0.007 -4.170 7.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.034 4.034 3 C -0.186 4.186 4 C -0.150 4.150 5 C -0.113 4.113 6 C -0.079 4.079 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.160 4.160 10 C -0.114 4.114 11 C -0.069 4.069 12 C 0.253 3.747 13 O -0.328 6.328 14 C -0.589 4.589 15 H 0.075 0.925 16 C -0.126 4.126 17 N -0.471 5.471 18 Si 0.701 3.299 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.091 0.909 23 H 0.025 0.975 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.195 0.805 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.255 0.114 -4.703 7.826 hybrid contribution 0.302 0.378 1.539 1.613 sum 6.557 0.492 -3.164 7.297 Atomic orbital electron populations 1.21491 0.93784 1.01866 0.98951 1.20392 0.96419 0.93604 0.92953 1.21793 0.99650 0.96574 1.00543 1.21714 0.93524 1.01421 0.98377 1.20471 0.96424 1.00631 0.93789 1.19727 0.93051 0.99906 0.95199 1.21016 0.94231 1.02717 0.97599 1.20826 0.98772 1.02806 0.93247 1.21027 0.95018 1.02634 0.97289 1.21385 0.93375 0.97547 0.99051 1.21155 0.99794 0.94752 0.91178 1.17511 0.80817 0.83282 0.93072 1.86457 1.68432 1.29809 1.48129 1.21495 1.06020 1.20517 1.10895 0.92521 1.24950 0.95703 0.95055 0.96887 1.70312 1.07335 1.33449 1.36027 0.86853 0.78230 0.79931 0.84884 1.19874 1.21120 1.21081 0.90940 0.97475 0.92263 0.93891 0.94982 0.91563 0.93305 0.91634 0.91331 0.92405 0.87505 0.87451 0.87290 0.85519 0.80529 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 7.09 37.16 0.26 -2.11 16 2 C -0.03 -0.72 0.40 -154.48 -0.06 -0.78 16 3 C -0.13 -2.62 7.37 37.16 0.27 -2.34 16 4 C -0.11 -2.18 4.93 -26.70 -0.13 -2.31 16 5 C -0.08 -1.33 5.07 -28.05 -0.14 -1.47 16 6 C -0.08 -1.52 5.01 -104.61 -0.52 -2.04 16 7 C -0.14 -2.36 9.61 -39.44 -0.38 -2.74 16 8 C -0.14 -2.28 10.05 -39.68 -0.40 -2.67 16 9 C -0.14 -2.48 10.05 -39.68 -0.40 -2.88 16 10 C -0.10 -1.93 8.95 -39.44 -0.35 -2.28 16 11 C -0.07 -1.45 4.59 -104.62 -0.48 -1.93 16 12 C 0.29 6.78 0.26 -93.09 -0.02 6.75 16 13 O -0.53 -12.90 9.05 -35.23 -0.32 -13.21 16 14 C -0.55 -13.75 4.73 -34.44 -0.16 -13.91 16 15 H 0.06 1.47 7.80 -52.49 -0.41 1.06 16 16 C 0.08 2.03 4.53 -17.82 -0.08 1.94 16 17 N -0.84 -21.83 9.55 55.43 0.53 -21.30 16 18 Si 0.87 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.07 1.83 5.98 -51.93 -0.31 1.52 16 23 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 24 H 0.06 1.46 7.44 -51.93 -0.39 1.07 16 25 H 0.04 0.85 5.54 -51.93 -0.29 0.56 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.45 6.98 -51.93 -0.36 1.09 16 28 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 29 H 0.06 1.36 7.66 -51.93 -0.40 0.96 16 30 H 0.07 1.13 6.80 -51.93 -0.35 0.78 16 31 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 32 H 0.11 1.55 8.05 -52.49 -0.42 1.13 16 33 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.13 2.63 7.27 -52.48 -0.38 2.25 16 36 H 0.35 8.34 8.90 45.56 0.41 8.75 16 37 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 LS Contribution 281.50 15.07 4.24 4.24 Total: -1.00 -26.31 281.50 -7.75 -34.05 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.58 Total: 9.97 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -2.60 Total: -28.78 kcal Atomic # 7 Polarization: -21.83 SS G_CDS: 0.53 Total: -21.30 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.32 Total: -13.21 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.31 -7.75 -34.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260396994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.278 kcal (2) G-P(sol) polarization free energy of solvation -26.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds