Wall clock time and date at job start Mon Mar 30 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.71033 * 2 1 4 4 C 1.53328 * 109.68037 * 239.46273 * 2 1 3 5 5 C 1.52736 * 108.36897 * 170.36218 * 4 2 1 6 6 C 1.50632 * 110.57168 * 51.11608 * 5 4 2 7 7 C 1.38922 * 117.73963 * 162.47293 * 6 5 4 8 8 C 1.37936 * 120.54229 * 179.66968 * 7 6 5 9 9 C 1.38261 * 119.76909 * 0.02580 * 8 7 6 10 10 C 1.37936 * 119.77708 * 0.10621 * 9 8 7 11 11 C 1.37660 * 122.57449 * 342.36449 * 6 5 4 12 12 C 1.50629 * 122.56988 * 0.43945 * 11 6 5 13 13 O 1.42906 * 109.25173 * 102.70878 * 12 11 6 14 14 C 1.50698 * 109.25726 * 222.17575 * 12 11 6 15 15 H 1.08002 * 119.99867 * 34.32169 * 14 12 11 16 16 C 1.37876 * 120.00038 * 214.32678 * 14 12 11 17 17 N 1.31515 * 120.00049 * 353.21473 * 16 14 12 18 18 Si 1.86800 * 119.99827 * 173.48794 * 16 14 12 19 19 H 1.48498 * 109.47458 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47197 * 119.99815 * 18 16 14 21 21 H 1.48506 * 109.46996 * 240.00073 * 18 16 14 22 22 H 1.09006 * 109.47195 * 299.46652 * 1 2 3 23 23 H 1.08996 * 109.47651 * 59.46427 * 1 2 3 24 24 H 1.09000 * 109.47314 * 179.47000 * 1 2 3 25 25 H 1.08990 * 109.47335 * 180.53776 * 3 2 1 26 26 H 1.09001 * 109.47142 * 300.54043 * 3 2 1 27 27 H 1.09001 * 109.47352 * 60.53318 * 3 2 1 28 28 H 1.09003 * 109.68454 * 50.64896 * 4 2 1 29 29 H 1.08997 * 109.72103 * 290.10695 * 4 2 1 30 30 H 1.09001 * 109.25443 * 290.83998 * 5 4 2 31 31 H 1.08995 * 109.25716 * 171.39898 * 5 4 2 32 32 H 1.07993 * 119.72666 * 359.69290 * 7 6 5 33 33 H 1.07999 * 120.11791 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.11171 * 180.12939 * 9 8 7 35 35 H 1.08003 * 119.72680 * 179.97438 * 10 9 8 36 36 H 0.96696 * 113.99591 * 59.46363 * 13 12 11 37 37 H 0.97000 * 119.99892 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0460 1.4403 0.0000 4 6 2.0464 -0.7336 -1.2435 5 6 3.5541 -0.5103 -1.3426 6 6 4.2256 -0.8444 -0.0363 7 6 5.5984 -1.0571 -0.0508 8 6 6.2731 -1.3598 1.1135 9 6 5.5783 -1.4530 2.3052 10 6 4.2148 -1.2448 2.3213 11 6 3.5332 -0.9412 1.1495 12 6 2.0444 -0.7307 1.2387 13 8 1.3944 -1.9993 1.3404 14 6 1.7307 0.0880 2.4645 15 1 2.4165 0.8558 2.7910 16 6 0.5684 -0.1433 3.1691 17 7 -0.3290 -0.9825 2.7000 18 14 0.2648 0.7412 4.7861 19 1 1.4161 1.6290 5.0886 20 1 -0.9734 1.5541 4.6808 21 1 0.1107 -0.2569 5.8749 22 1 -0.3634 0.5055 0.8948 23 1 -0.3634 0.5221 -0.8851 24 1 -0.3634 -1.0276 -0.0095 25 1 3.1358 1.4358 -0.0096 26 1 1.6769 1.9585 -0.8851 27 1 1.6926 1.9529 0.8947 28 1 1.5573 -0.3370 -2.1333 29 1 1.8381 -1.7997 -1.1545 30 1 3.7474 0.5337 -1.5894 31 1 3.9607 -1.1462 -2.1288 32 1 6.1417 -0.9846 -0.9813 33 1 7.3405 -1.5235 1.0944 34 1 6.1014 -1.6876 3.2205 35 1 3.6728 -1.3182 3.2525 36 1 1.6645 -2.5190 2.1098 37 1 -1.1469 -1.1449 3.1955 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260396994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:54 Heat of formation + Delta-G solvation = -40.913002 kcal Electronic energy + Delta-G solvation = -19200.880370 eV Core-core repulsion = 16521.133629 eV Total energy + Delta-G solvation = -2679.746741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.30411 -38.28101 -36.16662 -34.00869 -32.91536 -31.83538 -29.83741 -27.92342 -27.49686 -25.79843 -23.78164 -22.36384 -21.93843 -18.91484 -18.49683 -17.51459 -16.64979 -16.33320 -16.05502 -15.80246 -15.17340 -14.84769 -14.77474 -14.09015 -13.70929 -13.53159 -13.30514 -12.99485 -12.96044 -12.72378 -12.60455 -12.51779 -12.24792 -12.13015 -11.95474 -11.89703 -11.68170 -11.14448 -11.02101 -10.60156 -10.21511 -9.91367 -9.43520 -9.26397 -7.84646 -6.07386 0.67718 0.73333 1.37313 1.43972 1.50848 2.46644 3.08425 3.27316 3.93943 4.08997 4.18779 4.32958 4.35308 4.37308 4.54934 4.62028 4.69510 4.81730 4.87156 5.03931 5.04373 5.10108 5.13840 5.21582 5.34143 5.36207 5.44521 5.46016 5.58989 5.71680 5.78712 5.80721 5.87828 5.95943 6.13043 6.23577 6.32939 6.42516 6.85983 7.47625 7.73031 9.05542 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.011339 C = 0.008810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.918708 B = 2468.834501 C = 3177.553163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.040 4.040 3 C -0.119 4.119 4 C -0.107 4.107 5 C -0.073 4.073 6 C -0.093 4.093 7 C -0.135 4.135 8 C -0.131 4.131 9 C -0.142 4.142 10 C -0.119 4.119 11 C -0.098 4.098 12 C 0.288 3.712 13 O -0.539 6.539 14 C -0.547 4.547 15 H 0.039 0.961 16 C 0.044 3.956 17 N -0.857 5.857 18 Si 0.922 3.078 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.284 1.284 22 H 0.042 0.958 23 H 0.030 0.970 24 H 0.032 0.968 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.346 0.654 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.139 0.411 -5.712 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.041 4.041 3 C -0.176 4.176 4 C -0.145 4.145 5 C -0.109 4.109 6 C -0.093 4.093 7 C -0.153 4.153 8 C -0.149 4.149 9 C -0.160 4.160 10 C -0.137 4.137 11 C -0.098 4.098 12 C 0.248 3.752 13 O -0.341 6.341 14 C -0.586 4.586 15 H 0.057 0.943 16 C -0.159 4.159 17 N -0.493 5.493 18 Si 0.750 3.250 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.210 1.210 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.123 0.877 36 H 0.189 0.811 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.652 0.541 -6.241 10.682 hybrid contribution -0.376 0.242 2.022 2.071 sum 8.276 0.783 -4.219 9.323 Atomic orbital electron populations 1.21331 0.95159 0.99979 0.98524 1.20427 0.95301 0.94591 0.93781 1.21683 0.99918 0.95560 1.00474 1.21613 0.95452 0.99724 0.97687 1.20499 0.94575 1.02141 0.93707 1.19992 0.94346 0.99962 0.95002 1.21399 0.93347 1.01198 0.99351 1.21281 1.00607 1.00689 0.92287 1.21304 0.93843 1.01705 0.99175 1.21335 0.94886 0.99438 0.98090 1.20991 0.98674 0.97402 0.92773 1.17595 0.82538 0.82238 0.92873 1.86443 1.69294 1.30595 1.47794 1.21585 1.05236 1.19977 1.11802 0.94273 1.25399 0.95767 0.95791 0.98957 1.70420 1.07480 1.34696 1.36729 0.86094 0.77562 0.78913 0.82451 1.20153 1.21424 1.20979 0.93903 0.95145 0.94840 0.93299 0.92492 0.94074 0.91235 0.93753 0.89805 0.89677 0.84088 0.83641 0.84938 0.87737 0.81054 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -4.30 7.09 71.98 0.51 -3.79 16 2 C -0.04 -1.74 0.40 -52.16 -0.02 -1.76 16 3 C -0.12 -4.73 7.37 71.98 0.53 -4.20 16 4 C -0.11 -3.95 4.93 30.62 0.15 -3.80 16 5 C -0.07 -2.29 5.07 29.74 0.15 -2.14 16 6 C -0.09 -3.36 5.01 -19.86 -0.10 -3.46 16 7 C -0.14 -4.06 9.61 22.36 0.21 -3.85 16 8 C -0.13 -3.76 10.05 22.20 0.22 -3.54 16 9 C -0.14 -4.68 10.05 22.20 0.22 -4.46 16 10 C -0.12 -4.84 8.95 22.36 0.20 -4.64 16 11 C -0.10 -4.15 4.59 -19.86 -0.09 -4.24 16 12 C 0.29 13.55 0.26 -12.40 0.00 13.55 16 13 O -0.54 -27.54 9.05 -148.98 -1.35 -28.89 16 14 C -0.55 -28.26 4.73 25.60 0.12 -28.14 16 15 H 0.04 2.11 7.80 -2.91 -0.02 2.09 16 16 C 0.04 2.32 4.53 84.65 0.38 2.70 16 17 N -0.86 -46.55 9.55 21.45 0.20 -46.34 16 18 Si 0.92 42.53 29.54 68.60 2.03 44.55 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H 0.04 2.21 5.98 -2.38 -0.01 2.20 16 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.03 1.68 7.44 -2.39 -0.02 1.66 16 25 H 0.05 1.86 5.54 -2.39 -0.01 1.84 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.80 6.98 -2.39 -0.02 1.79 16 28 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 29 H 0.04 1.80 7.66 -2.39 -0.02 1.79 16 30 H 0.08 2.41 6.80 -2.39 -0.02 2.40 16 31 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16 32 H 0.14 3.27 8.05 -2.91 -0.02 3.25 16 33 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 35 H 0.10 4.56 7.27 -2.91 -0.02 4.54 16 36 H 0.35 17.48 8.90 -74.06 -0.66 16.82 16 37 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -58.05 281.50 3.78 -54.27 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.40 Total: 28.17 kcal Atomic # 6 Polarization: -54.25 SS G_CDS: 2.49 Total: -51.76 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.20 Total: -46.34 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -1.35 Total: -28.89 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -58.05 3.78 -54.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260396994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.355 kcal (2) G-P(sol) polarization free energy of solvation -58.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds