Wall clock time and date at job start Mon Mar 30 2020 05:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.71228 * 2 1 4 4 C 1.53320 * 109.70285 * 239.48753 * 2 1 3 5 5 C 1.52735 * 108.33521 * 310.21922 * 4 2 1 6 6 C 1.50636 * 110.57798 * 308.87378 * 5 4 2 7 7 C 1.38919 * 117.74263 * 197.52453 * 6 5 4 8 8 C 1.37930 * 120.54381 * 180.33172 * 7 6 5 9 9 C 1.38264 * 119.76822 * 359.97438 * 8 7 6 10 10 C 1.37933 * 119.77544 * 359.88434 * 9 8 7 11 11 C 1.37653 * 122.57216 * 17.64199 * 6 5 4 12 12 C 1.50636 * 122.56769 * 359.54767 * 11 6 5 13 13 O 1.42890 * 109.25431 * 257.29650 * 12 11 6 14 14 C 1.50707 * 109.25184 * 137.83117 * 12 11 6 15 15 H 1.08003 * 119.99627 * 323.47703 * 14 12 11 16 16 C 1.37874 * 119.99761 * 143.46974 * 14 12 11 17 17 N 1.31509 * 120.00447 * 15.09111 * 16 14 12 18 18 Si 1.86803 * 119.99605 * 195.08274 * 16 14 12 19 19 H 1.48511 * 109.46877 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.46983 * 60.00840 * 18 16 14 21 21 H 1.48499 * 109.47555 * 300.00318 * 18 16 14 22 22 H 1.09011 * 109.46745 * 299.46304 * 1 2 3 23 23 H 1.08999 * 109.47307 * 59.45936 * 1 2 3 24 24 H 1.09006 * 109.47486 * 179.46970 * 1 2 3 25 25 H 1.09000 * 109.47066 * 180.53879 * 3 2 1 26 26 H 1.09004 * 109.46906 * 300.53668 * 3 2 1 27 27 H 1.08996 * 109.46743 * 60.53607 * 3 2 1 28 28 H 1.09001 * 109.70773 * 190.51047 * 4 2 1 29 29 H 1.08998 * 109.72171 * 69.94052 * 4 2 1 30 30 H 1.08996 * 109.25865 * 188.58705 * 5 4 2 31 31 H 1.09001 * 109.22460 * 69.13770 * 5 4 2 32 32 H 1.07995 * 119.72769 * 0.30865 * 7 6 5 33 33 H 1.08000 * 120.11605 * 179.97438 * 8 7 6 34 34 H 1.08005 * 120.11498 * 179.86969 * 9 8 7 35 35 H 1.08001 * 119.72576 * 180.02562 * 10 9 8 36 36 H 0.96702 * 114.00520 * 297.41251 * 13 12 11 37 37 H 0.97007 * 119.99837 * 6.08608 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0460 1.4403 0.0000 4 6 2.0469 -0.7329 -1.2436 5 6 1.3275 -2.0765 -1.3431 6 6 1.4149 -2.8219 -0.0370 7 6 1.1514 -4.1858 -0.0519 8 6 1.2082 -4.9235 1.1122 9 6 1.5304 -4.3012 2.3041 10 6 1.7952 -2.9477 2.3205 11 6 1.7396 -2.2032 1.1491 12 6 2.0444 -0.7308 1.2386 13 8 3.4579 -0.5476 1.3407 14 6 1.3796 -0.1594 2.4645 15 1 0.4089 -0.5209 2.7703 16 6 2.0106 0.8247 3.1955 17 7 3.0323 1.4733 2.6808 18 14 1.4140 1.2368 4.9170 19 1 2.2536 2.3221 5.4853 20 1 1.5143 0.0308 5.7776 21 1 -0.0002 1.6858 4.8567 22 1 -0.3633 0.5055 0.8949 23 1 -0.3634 0.5222 -0.8851 24 1 -0.3634 -1.0277 -0.0095 25 1 3.1360 1.4357 -0.0097 26 1 1.6770 1.9585 -0.8852 27 1 1.6927 1.9528 0.8947 28 1 3.1207 -0.8971 -1.1536 29 1 1.8396 -0.1386 -2.1334 30 1 1.7888 -2.6739 -2.1294 31 1 0.2797 -1.9052 -1.5898 32 1 0.8997 -4.6725 -0.9826 33 1 1.0017 -5.9833 1.0927 34 1 1.5744 -4.8731 3.2193 35 1 2.0472 -2.4625 3.2520 36 1 3.8487 -0.9369 2.1349 37 1 3.2867 1.3227 1.7569 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260396996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:56 Heat of formation + Delta-G solvation = -28.376386 kcal Electronic energy + Delta-G solvation = -19268.123675 eV Core-core repulsion = 16588.920563 eV Total energy + Delta-G solvation = -2679.203112 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95509 -37.02252 -34.82707 -32.24817 -31.22506 -30.51014 -28.36437 -26.48997 -25.68396 -23.78240 -22.41487 -20.88085 -20.59017 -17.67825 -16.96793 -16.24640 -15.22386 -14.67392 -14.45091 -13.90527 -13.74718 -13.29418 -13.16720 -12.71870 -12.35980 -12.29928 -11.68687 -11.61886 -11.27673 -11.11272 -10.97779 -10.82405 -10.69167 -10.50324 -10.35820 -10.10136 -9.98911 -9.68132 -9.51557 -9.02348 -8.30496 -8.12515 -8.05598 -7.84382 -6.11687 -4.04383 2.01270 2.07793 3.43112 3.45419 3.63502 4.41789 4.55514 5.23794 5.31355 5.42247 5.56787 5.59260 5.63883 5.72419 5.85636 6.01930 6.10451 6.13225 6.23328 6.41168 6.44697 6.48655 6.57830 6.63474 6.71149 6.76613 6.84867 6.98859 7.03923 7.08463 7.20849 7.26033 7.43669 7.56530 7.66658 7.73883 8.08652 8.43836 8.94852 9.12174 9.71543 11.15635 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022297 B = 0.011605 C = 0.008826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.486599 B = 2412.235475 C = 3171.803716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.039 4.039 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.076 4.076 6 C -0.079 4.079 7 C -0.138 4.138 8 C -0.136 4.136 9 C -0.141 4.141 10 C -0.092 4.092 11 C -0.065 4.065 12 C 0.284 3.716 13 O -0.558 6.558 14 C -0.637 4.637 15 H 0.051 0.949 16 C 0.042 3.958 17 N -0.896 5.896 18 Si 1.046 2.954 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.291 1.291 22 H 0.068 0.932 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.362 0.638 37 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 -6.853 -4.400 8.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.040 4.040 3 C -0.182 4.182 4 C -0.151 4.151 5 C -0.113 4.113 6 C -0.080 4.080 7 C -0.156 4.156 8 C -0.154 4.154 9 C -0.159 4.159 10 C -0.110 4.110 11 C -0.066 4.066 12 C 0.245 3.755 13 O -0.362 6.362 14 C -0.674 4.674 15 H 0.069 0.931 16 C -0.168 4.168 17 N -0.536 5.536 18 Si 0.875 3.125 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.217 1.217 22 H 0.087 0.913 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.146 0.854 36 H 0.208 0.792 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.417 -5.600 -3.687 7.127 hybrid contribution -0.488 -1.462 -0.703 1.694 sum -2.904 -7.062 -4.390 8.808 Atomic orbital electron populations 1.21760 0.95280 1.00547 1.00747 1.20507 0.94637 0.95483 0.93334 1.21825 1.00668 0.95269 1.00486 1.21719 1.00291 0.94862 0.98252 1.20463 1.00682 0.96238 0.93896 1.19721 0.99900 0.93239 0.95103 1.21008 1.02911 0.93986 0.97674 1.20846 1.02531 0.98864 0.93207 1.21043 1.02211 0.95322 0.97357 1.21394 0.97794 0.92820 0.99041 1.20940 0.95516 0.98826 0.91277 1.17726 0.79248 0.84728 0.93832 1.86301 1.22384 1.80548 1.46990 1.22124 1.07395 1.25509 1.12408 0.93054 1.25406 0.95195 0.92614 1.03633 1.70595 1.25359 1.37415 1.20190 0.83925 0.75731 0.76363 0.76444 1.21029 1.21630 1.21736 0.91304 0.94831 0.93698 0.92692 0.95886 0.90522 0.91700 0.93085 0.92246 0.91223 0.87420 0.87324 0.87142 0.85395 0.79161 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 7.37 37.16 0.27 -2.30 16 2 C -0.04 -0.84 0.40 -154.48 -0.06 -0.90 16 3 C -0.13 -2.80 6.84 37.16 0.25 -2.55 16 4 C -0.11 -2.16 4.94 -26.70 -0.13 -2.29 16 5 C -0.08 -1.32 5.07 -28.05 -0.14 -1.46 16 6 C -0.08 -1.53 5.01 -104.61 -0.52 -2.06 16 7 C -0.14 -2.36 9.61 -39.44 -0.38 -2.73 16 8 C -0.14 -2.24 10.05 -39.68 -0.40 -2.64 16 9 C -0.14 -2.48 10.05 -39.68 -0.40 -2.88 16 10 C -0.09 -1.89 9.00 -39.44 -0.35 -2.24 16 11 C -0.06 -1.39 4.60 -104.62 -0.48 -1.87 16 12 C 0.28 6.57 0.26 -93.09 -0.02 6.55 16 13 O -0.56 -13.49 8.64 -35.23 -0.30 -13.80 16 14 C -0.64 -16.13 4.66 -34.44 -0.16 -16.29 16 15 H 0.05 1.36 7.79 -52.48 -0.41 0.95 16 16 C 0.04 1.09 4.61 -17.82 -0.08 1.01 16 17 N -0.90 -24.68 12.06 55.43 0.67 -24.01 16 18 Si 1.05 23.74 29.93 -169.99 -5.09 18.66 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.07 1.53 6.94 -51.92 -0.36 1.17 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.89 5.54 -51.93 -0.29 0.61 16 25 H 0.05 1.29 6.53 -51.93 -0.34 0.95 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 1.92 5.93 -51.93 -0.31 1.61 16 28 H 0.06 1.32 7.66 -51.93 -0.40 0.92 16 29 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 31 H 0.07 1.14 6.79 -51.93 -0.35 0.79 16 32 H 0.11 1.56 8.05 -52.49 -0.42 1.13 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.13 2.71 7.27 -52.49 -0.38 2.33 16 36 H 0.36 8.55 8.83 45.56 0.40 8.96 16 37 H 0.31 8.34 3.00 -40.82 -0.12 8.22 16 LS Contribution 277.42 15.07 4.18 4.18 Total: -1.00 -27.36 277.42 -7.46 -34.82 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -4.31 Total: 12.80 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: -2.61 Total: -32.65 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.67 Total: -24.01 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.30 Total: -13.80 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.09 Total: 18.66 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.36 -7.46 -34.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260396996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.445 kcal (2) G-P(sol) polarization free energy of solvation -27.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds