Wall clock time and date at job start Mon Mar 30 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38291 * 119.97198 * 2 1 4 4 C 1.38243 * 120.11233 * 180.02562 * 3 2 1 5 5 C 1.38168 * 120.05297 * 359.67321 * 4 3 2 6 6 C 1.38717 * 119.94383 * 0.62224 * 5 4 3 7 7 O 1.35892 * 120.05361 * 179.67902 * 6 5 4 8 8 C 1.42904 * 116.99853 * 185.13540 * 7 6 5 9 9 H 1.08999 * 110.05718 * 34.58485 * 8 7 6 10 10 C 1.54374 * 110.04519 * 273.11349 * 8 7 6 11 11 C 1.54886 * 104.19635 * 217.08947 * 10 8 7 12 12 C 1.54892 * 102.75082 * 37.96955 * 11 10 8 13 13 H 1.08994 * 110.48561 * 80.73828 * 12 11 10 14 14 C 1.50700 * 110.48812 * 203.37744 * 12 11 10 15 15 H 1.08008 * 119.99667 * 114.77592 * 14 12 11 16 16 C 1.37873 * 120.00302 * 294.77990 * 14 12 11 17 17 N 1.31516 * 120.00380 * 180.02562 * 16 14 12 18 18 Si 1.86806 * 119.99901 * 359.97438 * 16 14 12 19 19 H 1.48499 * 109.46970 * 90.00606 * 18 16 14 20 20 H 1.48499 * 109.47007 * 210.00667 * 18 16 14 21 21 H 1.48496 * 109.46898 * 330.00332 * 18 16 14 22 22 C 1.53872 * 110.03256 * 156.00258 * 8 7 6 23 23 C 1.38117 * 119.97310 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47620 * 269.98185 * 1 2 3 25 25 H 1.09004 * 109.46611 * 29.98282 * 1 2 3 26 26 H 1.09000 * 109.47116 * 149.97981 * 1 2 3 27 27 H 1.08000 * 119.94123 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.97272 * 179.97438 * 4 3 2 29 29 H 1.07997 * 120.02928 * 180.30127 * 5 4 3 30 30 H 1.09000 * 110.46094 * 98.42301 * 10 8 7 31 31 H 1.08999 * 110.62487 * 335.83797 * 10 8 7 32 32 H 1.09004 * 110.75857 * 279.65913 * 11 10 8 33 33 H 1.08998 * 110.91939 * 156.35883 * 11 10 8 34 34 H 0.96988 * 120.00177 * 179.97438 * 17 16 14 35 35 H 1.09000 * 110.03675 * 0.02562 * 22 8 7 36 36 H 1.09001 * 110.03324 * 238.61812 * 22 8 7 37 37 H 1.08001 * 120.02424 * 0.02671 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2752 0.0071 0.0058 6 6 3.5845 -1.1959 -0.0005 7 8 4.2658 -2.3717 -0.0009 8 6 3.4941 -3.5685 -0.1214 9 1 2.6335 -3.3949 -0.7674 10 6 3.0243 -4.0377 1.2723 11 6 3.1067 -5.5827 1.2006 12 6 4.3916 -5.8183 0.3684 13 1 5.2764 -5.7240 0.9979 14 6 4.3528 -7.1735 -0.2895 15 1 4.3120 -7.2502 -1.3661 16 6 4.3694 -8.3155 0.4828 17 7 4.3361 -9.4983 -0.0913 18 14 4.4407 -8.1829 2.3448 19 1 3.0605 -8.1328 2.8906 20 1 5.1493 -9.3646 2.8985 21 1 5.1688 -6.9460 2.7254 22 6 4.3638 -4.7009 -0.6949 23 6 2.1970 -1.1965 -0.0005 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6565 2.1325 -0.0004 28 1 4.1176 2.1382 -0.0010 29 1 5.3552 0.0103 0.0102 30 1 1.9984 -3.7184 1.4559 31 1 3.6865 -3.6559 2.0493 32 1 2.2353 -5.9928 0.6901 33 1 3.2072 -6.0137 2.1967 34 1 4.3481 -10.3016 0.4520 35 1 5.3746 -4.3378 -0.8809 36 1 3.9258 -5.0763 -1.6197 37 1 1.6570 -2.1317 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260430382.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:58 Heat of formation + Delta-G solvation = -30.701442 kcal Electronic energy + Delta-G solvation = -17510.461948 eV Core-core repulsion = 14831.158014 eV Total energy + Delta-G solvation = -2679.303934 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19627 -38.10263 -36.02283 -32.74667 -32.23896 -29.96241 -28.74013 -27.84612 -26.83834 -23.90281 -22.32100 -21.44001 -20.11559 -19.13850 -17.80715 -16.80951 -16.09869 -15.69943 -15.12551 -14.54856 -14.37503 -13.87277 -13.58047 -13.34936 -13.12596 -12.88959 -12.62233 -12.40962 -12.23013 -11.73559 -11.51495 -11.24656 -11.04097 -10.80574 -10.56757 -10.34497 -10.27254 -9.90265 -9.66013 -9.47309 -9.03773 -8.80270 -8.55488 -8.02446 -6.08631 -4.07815 1.33468 1.50208 3.27503 3.37183 3.39696 3.51133 3.78535 4.41213 4.72310 4.83197 5.04290 5.11725 5.17496 5.22841 5.31364 5.35593 5.47506 5.48892 5.60471 5.63974 5.71471 5.94273 6.06504 6.17809 6.24726 6.28301 6.39592 6.42494 6.46437 6.58404 6.62469 6.77717 6.78711 6.93933 7.08454 7.48491 7.69622 7.78911 8.50589 8.94699 9.54165 11.04566 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041705 B = 0.004954 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.214912 B = 5651.101748 C = 5819.607197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.170 4.170 4 C -0.080 4.080 5 C -0.167 4.167 6 C 0.145 3.855 7 O -0.308 6.308 8 C 0.080 3.920 9 H 0.070 0.930 10 C -0.145 4.145 11 C -0.127 4.127 12 C 0.014 3.986 13 H 0.036 0.964 14 C -0.511 4.511 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.902 5.902 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.264 1.264 22 C -0.102 4.102 23 C -0.212 4.212 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 19.417 1.483 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.189 4.189 4 C -0.098 4.098 5 C -0.185 4.185 6 C 0.099 3.901 7 O -0.221 6.221 8 C 0.024 3.976 9 H 0.088 0.912 10 C -0.183 4.183 11 C -0.165 4.165 12 C -0.005 4.005 13 H 0.054 0.946 14 C -0.549 4.549 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.189 1.189 22 C -0.139 4.139 23 C -0.230 4.230 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.237 19.157 1.519 19.918 hybrid contribution -0.228 -0.154 1.063 1.098 sum -5.465 19.003 2.582 19.941 Atomic orbital electron populations 1.20816 0.91274 1.02759 1.02381 1.19703 0.95853 0.92594 0.96774 1.20851 0.94206 0.97244 1.06573 1.20884 0.94071 0.97085 0.97722 1.20451 1.00320 0.89947 1.07828 1.19131 0.90573 0.86714 0.93726 1.86219 1.36711 1.12421 1.86755 1.23462 0.94493 0.82370 0.97252 0.91235 1.22950 1.00141 0.98738 0.96480 1.22888 1.01781 0.91776 1.00062 1.19958 0.93231 0.94343 0.93005 0.94626 1.21052 1.50778 0.88059 0.95021 0.90735 1.24982 0.94376 0.95259 0.98372 1.69897 1.50833 0.97544 1.35725 0.86920 0.78418 0.77451 0.86472 1.20356 1.22025 1.18881 1.22232 0.98943 0.92739 1.00002 1.21264 0.93329 0.98967 1.09489 0.91069 0.91521 0.91454 0.86373 0.85754 0.85465 0.92395 0.91196 0.91117 0.93131 0.92657 0.91582 0.90629 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.05 -0.59 5.88 -104.65 -0.62 -1.20 16 3 C -0.17 -1.89 9.70 -39.56 -0.38 -2.27 16 4 C -0.08 -0.90 10.04 -39.61 -0.40 -1.29 16 5 C -0.17 -2.24 9.99 -39.43 -0.39 -2.63 16 6 C 0.14 2.22 6.63 -39.22 -0.26 1.96 16 7 O -0.31 -5.35 9.70 -19.40 -0.19 -5.53 16 8 C 0.08 1.39 2.80 -25.56 -0.07 1.32 16 9 H 0.07 1.11 6.32 -51.93 -0.33 0.79 16 10 C -0.15 -2.55 6.13 -25.02 -0.15 -2.70 16 11 C -0.13 -2.66 5.31 -24.74 -0.13 -2.79 16 12 C 0.01 0.31 2.28 -90.11 -0.21 0.11 16 13 H 0.04 0.86 7.06 -51.93 -0.37 0.50 16 14 C -0.51 -14.13 9.04 -34.44 -0.31 -14.44 16 15 H 0.07 2.22 7.79 -52.48 -0.41 1.81 16 16 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 17 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 18 Si 0.88 21.65 24.65 -169.99 -4.19 17.46 16 19 H -0.28 -6.64 7.10 56.52 0.40 -6.24 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.28 6.47 56.52 0.37 -5.91 16 22 C -0.10 -2.03 6.17 -25.61 -0.16 -2.19 16 23 C -0.21 -2.96 8.44 -39.44 -0.33 -3.29 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.06 0.89 7.56 -51.93 -0.39 0.50 16 31 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 32 H 0.07 1.49 8.05 -51.93 -0.42 1.07 16 33 H 0.05 1.08 5.27 -51.93 -0.27 0.80 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.07 1.29 7.95 -51.93 -0.41 0.88 16 36 H 0.08 1.51 7.66 -51.93 -0.40 1.11 16 37 H 0.13 1.78 5.38 -52.49 -0.28 1.49 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -29.99 294.78 -7.72 -37.70 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.40 Total: 0.76 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -3.15 Total: -28.19 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.77 Total: -26.64 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.19 Total: -5.53 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.19 Total: 17.46 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.99 -7.72 -37.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260430382.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.000 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds