Wall clock time and date at job start Mon Mar 30 2020 05:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38291 * 119.97198 * 2 1 4 4 C 1.38243 * 120.11233 * 180.02562 * 3 2 1 5 5 C 1.38168 * 120.05297 * 359.67321 * 4 3 2 6 6 C 1.38717 * 119.94383 * 0.62224 * 5 4 3 7 7 O 1.35892 * 120.05361 * 179.67902 * 6 5 4 8 8 C 1.42904 * 116.99853 * 185.13540 * 7 6 5 9 9 H 1.08999 * 110.05718 * 34.58485 * 8 7 6 10 10 C 1.54374 * 110.04519 * 273.11349 * 8 7 6 11 11 C 1.54886 * 104.19635 * 217.08947 * 10 8 7 12 12 C 1.54892 * 102.75082 * 37.96955 * 11 10 8 13 13 H 1.08994 * 110.48561 * 80.73828 * 12 11 10 14 14 C 1.50700 * 110.48812 * 203.37744 * 12 11 10 15 15 H 1.08008 * 119.99667 * 114.77592 * 14 12 11 16 16 C 1.37873 * 120.00302 * 294.77990 * 14 12 11 17 17 N 1.31516 * 120.00380 * 180.02562 * 16 14 12 18 18 Si 1.86806 * 119.99901 * 359.97438 * 16 14 12 19 19 H 1.48499 * 109.46970 * 90.00606 * 18 16 14 20 20 H 1.48499 * 109.47007 * 210.00667 * 18 16 14 21 21 H 1.48496 * 109.46898 * 330.00332 * 18 16 14 22 22 C 1.53872 * 110.03256 * 156.00258 * 8 7 6 23 23 C 1.38117 * 119.97310 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47620 * 269.98185 * 1 2 3 25 25 H 1.09004 * 109.46611 * 29.98282 * 1 2 3 26 26 H 1.09000 * 109.47116 * 149.97981 * 1 2 3 27 27 H 1.08000 * 119.94123 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.97272 * 179.97438 * 4 3 2 29 29 H 1.07997 * 120.02928 * 180.30127 * 5 4 3 30 30 H 1.09000 * 110.46094 * 98.42301 * 10 8 7 31 31 H 1.08999 * 110.62487 * 335.83797 * 10 8 7 32 32 H 1.09004 * 110.75857 * 279.65913 * 11 10 8 33 33 H 1.08998 * 110.91939 * 156.35883 * 11 10 8 34 34 H 0.96988 * 120.00177 * 179.97438 * 17 16 14 35 35 H 1.09000 * 110.03675 * 0.02562 * 22 8 7 36 36 H 1.09001 * 110.03324 * 238.61812 * 22 8 7 37 37 H 1.08001 * 120.02424 * 0.02671 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2752 0.0071 0.0058 6 6 3.5845 -1.1959 -0.0005 7 8 4.2658 -2.3717 -0.0009 8 6 3.4941 -3.5685 -0.1214 9 1 2.6335 -3.3949 -0.7674 10 6 3.0243 -4.0377 1.2723 11 6 3.1067 -5.5827 1.2006 12 6 4.3916 -5.8183 0.3684 13 1 5.2764 -5.7240 0.9979 14 6 4.3528 -7.1735 -0.2895 15 1 4.3120 -7.2502 -1.3661 16 6 4.3694 -8.3155 0.4828 17 7 4.3361 -9.4983 -0.0913 18 14 4.4407 -8.1829 2.3448 19 1 3.0605 -8.1328 2.8906 20 1 5.1493 -9.3646 2.8985 21 1 5.1688 -6.9460 2.7254 22 6 4.3638 -4.7009 -0.6949 23 6 2.1970 -1.1965 -0.0005 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6565 2.1325 -0.0004 28 1 4.1176 2.1382 -0.0010 29 1 5.3552 0.0103 0.0102 30 1 1.9984 -3.7184 1.4559 31 1 3.6865 -3.6559 2.0493 32 1 2.2353 -5.9928 0.6901 33 1 3.2072 -6.0137 2.1967 34 1 4.3481 -10.3016 0.4520 35 1 5.3746 -4.3378 -0.8809 36 1 3.9258 -5.0763 -1.6197 37 1 1.6570 -2.1317 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260430382.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:57 Heat of formation + Delta-G solvation = -47.353359 kcal Electronic energy + Delta-G solvation = -17511.184030 eV Core-core repulsion = 14831.158014 eV Total energy + Delta-G solvation = -2680.026015 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33804 -39.31749 -37.47447 -34.49366 -33.47821 -31.00070 -30.47803 -29.32392 -27.75477 -25.71740 -23.46769 -22.40728 -21.62360 -20.77624 -19.19910 -18.65034 -17.25693 -16.75567 -16.59243 -16.09244 -15.61556 -15.18151 -14.84008 -14.69986 -14.42381 -14.21539 -14.03894 -13.86152 -13.21065 -12.99036 -12.73316 -12.66181 -12.43924 -12.27958 -12.09302 -11.86673 -11.66248 -11.57993 -11.30855 -11.27897 -11.05929 -10.70537 -9.72400 -9.05835 -8.30054 -6.33613 0.41124 0.53673 1.31445 1.35973 1.46129 2.30026 2.33602 2.84510 3.04780 3.66899 3.68895 3.88562 3.95808 4.06928 4.20043 4.33953 4.46047 4.50373 4.58023 4.62456 4.69520 4.80622 4.83588 4.86723 4.88197 4.94317 4.98066 5.06226 5.23760 5.30410 5.36472 5.46201 5.54140 5.59773 5.69308 5.71080 5.97302 6.29981 6.56606 6.72677 7.31913 8.86751 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041705 B = 0.004954 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.214912 B = 5651.101748 C = 5819.607197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.056 4.056 3 C -0.167 4.167 4 C -0.076 4.076 5 C -0.181 4.181 6 C 0.113 3.887 7 O -0.325 6.325 8 C 0.091 3.909 9 H 0.084 0.916 10 C -0.133 4.133 11 C -0.125 4.125 12 C 0.008 3.992 13 H 0.028 0.972 14 C -0.515 4.515 15 H 0.036 0.964 16 C 0.015 3.985 17 N -0.950 5.950 18 Si 0.940 3.060 19 H -0.261 1.261 20 H -0.294 1.294 21 H -0.250 1.250 22 C -0.100 4.100 23 C -0.225 4.225 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.266 0.734 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.742 22.498 2.965 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.056 4.056 3 C -0.185 4.185 4 C -0.094 4.094 5 C -0.200 4.200 6 C 0.068 3.932 7 O -0.239 6.239 8 C 0.035 3.965 9 H 0.102 0.898 10 C -0.171 4.171 11 C -0.163 4.163 12 C -0.011 4.011 13 H 0.046 0.954 14 C -0.553 4.553 15 H 0.054 0.946 16 C -0.182 4.182 17 N -0.591 5.591 18 Si 0.765 3.235 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.174 1.174 22 C -0.138 4.138 23 C -0.244 4.244 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.148 0.852 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.540 22.272 2.997 23.405 hybrid contribution 0.181 -1.009 0.481 1.133 sum -6.359 21.263 3.478 22.464 Atomic orbital electron populations 1.20875 0.89277 1.03720 1.03276 1.20089 0.97433 0.92241 0.95813 1.21283 0.94343 0.98165 1.04738 1.21270 0.94512 0.97430 0.96205 1.20698 1.00811 0.90225 1.08253 1.19432 0.91443 0.86293 0.96071 1.86155 1.37216 1.12936 1.87637 1.23176 0.94027 0.82015 0.97301 0.89800 1.22856 1.01941 0.95770 0.96502 1.22746 0.99833 0.94560 0.99168 1.19913 0.94314 0.92891 0.94019 0.95418 1.21343 1.49816 0.90593 0.93584 0.94575 1.25820 0.94160 0.94718 1.03478 1.70042 1.52806 0.98492 1.37739 0.85929 0.79357 0.77806 0.80391 1.18601 1.22103 1.17365 1.22097 0.99658 0.93088 0.98927 1.21368 0.92867 0.99895 1.10234 0.90083 0.89664 0.91487 0.83408 0.82720 0.85199 0.89580 0.91074 0.91643 0.93195 0.92527 0.91732 0.91455 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 10.01 71.24 0.71 -1.00 16 2 C -0.06 -1.17 5.88 -19.88 -0.12 -1.28 16 3 C -0.17 -3.08 9.70 22.28 0.22 -2.86 16 4 C -0.08 -1.48 10.04 22.25 0.22 -1.25 16 5 C -0.18 -4.55 9.99 22.37 0.22 -4.33 16 6 C 0.11 3.31 6.63 22.51 0.15 3.46 16 7 O -0.33 -11.06 9.70 -92.34 -0.90 -11.96 16 8 C 0.09 3.07 2.80 31.35 0.09 3.16 16 9 H 0.08 2.59 6.32 -2.39 -0.02 2.58 16 10 C -0.13 -4.40 6.13 31.70 0.19 -4.21 16 11 C -0.13 -5.08 5.31 31.88 0.17 -4.91 16 12 C 0.01 0.35 2.28 -10.46 -0.02 0.33 16 13 H 0.03 1.34 7.06 -2.39 -0.02 1.32 16 14 C -0.52 -29.44 9.04 25.60 0.23 -29.21 16 15 H 0.04 2.27 7.79 -2.91 -0.02 2.25 16 16 C 0.02 0.89 5.46 84.65 0.46 1.35 16 17 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 18 Si 0.94 44.66 24.65 68.60 1.69 46.35 16 19 H -0.26 -11.66 7.10 99.48 0.71 -10.95 16 20 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.25 -11.19 6.47 99.48 0.64 -10.55 16 22 C -0.10 -4.05 6.17 31.32 0.19 -3.86 16 23 C -0.23 -5.84 8.44 22.36 0.19 -5.66 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 0.95 8.09 -2.38 -0.02 0.93 16 26 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 27 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 28 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.09 2.38 7.56 -2.39 -0.02 2.36 16 31 H 0.07 2.36 8.08 -2.39 -0.02 2.34 16 32 H 0.06 2.70 8.05 -2.38 -0.02 2.68 16 33 H 0.05 2.02 5.27 -2.39 -0.01 2.01 16 34 H 0.27 15.60 8.31 -92.72 -0.77 14.83 16 35 H 0.06 2.58 7.95 -2.39 -0.02 2.56 16 36 H 0.07 2.78 7.66 -2.39 -0.02 2.77 16 37 H 0.13 3.26 5.38 -2.91 -0.02 3.25 16 Total: -1.00 -66.19 294.78 4.99 -61.20 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.98 Total: 13.97 kcal Atomic # 6 Polarization: -53.19 SS G_CDS: 2.91 Total: -50.28 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.30 Total: -59.29 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.90 Total: -11.96 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.69 Total: 46.35 kcal Total: -66.19 4.99 -61.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260430382.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.845 kcal (2) G-P(sol) polarization free energy of solvation -66.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds