Wall clock time and date at job start Mon Mar 30 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38289 * 119.96853 * 2 1 4 4 C 1.38249 * 120.11300 * 179.72504 * 3 2 1 5 5 C 1.38169 * 120.05202 * 0.54789 * 4 3 2 6 6 C 1.38708 * 119.94425 * 359.72591 * 5 4 3 7 7 O 1.35898 * 120.05531 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00128 * 354.56568 * 7 6 5 9 9 H 1.09003 * 110.43301 * 326.37305 * 8 7 6 10 10 C 1.54268 * 110.48579 * 89.05706 * 8 7 6 11 11 C 1.53872 * 106.60036 * 142.28590 * 10 8 7 12 12 C 1.54272 * 106.59615 * 0.02562 * 11 10 8 13 13 H 1.08996 * 110.48735 * 95.06724 * 12 11 10 14 14 C 1.50701 * 110.48253 * 217.70764 * 12 11 10 15 15 H 1.07997 * 120.00182 * 114.77077 * 14 12 11 16 16 C 1.37874 * 120.00136 * 294.77639 * 14 12 11 17 17 N 1.31520 * 119.99973 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 120.00231 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46903 * 89.99529 * 18 16 14 20 20 H 1.48499 * 109.47152 * 209.99444 * 18 16 14 21 21 H 1.48498 * 109.46846 * 329.99775 * 18 16 14 22 22 C 1.54884 * 104.19591 * 336.38442 * 12 11 10 23 23 C 1.38122 * 119.97781 * 180.27552 * 2 1 3 24 24 H 1.08994 * 109.47148 * 269.72320 * 1 2 3 25 25 H 1.09003 * 109.46349 * 149.72479 * 1 2 3 26 26 H 1.08990 * 109.47333 * 29.72875 * 1 2 3 27 27 H 1.08001 * 119.94771 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.97362 * 180.25682 * 4 3 2 29 29 H 1.07998 * 120.02668 * 179.70560 * 5 4 3 30 30 H 1.08995 * 110.03313 * 261.57621 * 10 8 7 31 31 H 1.09009 * 110.02850 * 23.00243 * 10 8 7 32 32 H 1.08998 * 110.03614 * 240.71638 * 11 10 8 33 33 H 1.09004 * 110.07197 * 119.30341 * 11 10 8 34 34 H 0.97000 * 120.00090 * 180.02562 * 17 16 14 35 35 H 1.09007 * 110.75704 * 279.63334 * 22 12 11 36 36 H 1.08996 * 110.75912 * 156.26427 * 22 12 11 37 37 H 1.08004 * 120.02552 * 359.97361 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2015 0.0057 5 6 4.2752 0.0073 0.0001 6 6 3.5847 -1.1956 -0.0057 7 8 4.2660 -2.3715 -0.0118 8 6 5.6879 -2.2968 -0.1326 9 1 5.9727 -1.4524 -0.7603 10 6 6.3428 -2.1835 1.2596 11 6 7.6349 -3.0174 1.2069 12 6 7.7204 -3.6079 -0.2158 13 1 8.3355 -2.9748 -0.8552 14 6 8.2714 -5.0099 -0.1726 15 1 7.6508 -5.8433 -0.4670 16 6 9.5677 -5.2287 0.2429 17 7 10.3236 -4.2138 0.6011 18 14 10.2504 -6.9666 0.2972 19 1 10.8770 -7.2933 -1.0089 20 1 11.2690 -7.0649 1.3733 21 1 9.1479 -7.9232 0.5703 22 6 6.2533 -3.6170 -0.7121 23 6 2.1971 -1.1964 -0.0058 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3632 -0.8876 -0.5181 26 1 -0.3633 0.8923 -0.5096 27 1 1.6564 2.1325 -0.0004 28 1 4.1174 2.1384 0.0099 29 1 5.3552 0.0106 -0.0003 30 1 6.5791 -1.1420 1.4774 31 1 5.6722 -2.5817 2.0212 32 1 7.5915 -3.8202 1.9428 33 1 8.4988 -2.3812 1.3992 34 1 11.2357 -4.3676 0.8930 35 1 5.7152 -4.4762 -0.3113 36 1 6.2138 -3.6091 -1.8013 37 1 1.6572 -2.1318 -0.0098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260430385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:59 Heat of formation + Delta-G solvation = -37.173813 kcal Electronic energy + Delta-G solvation = -17308.084447 eV Core-core repulsion = 14628.499850 eV Total energy + Delta-G solvation = -2679.584597 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05533 -37.97278 -35.84160 -32.47483 -32.35461 -30.02935 -28.29944 -27.22191 -26.79284 -23.97801 -22.41016 -21.53166 -19.48052 -19.21953 -17.67667 -16.42988 -15.78307 -15.54599 -15.14349 -14.54191 -14.21646 -14.04592 -13.49519 -13.38758 -13.13053 -12.49485 -12.43879 -12.10911 -11.81587 -11.55902 -11.52652 -11.18078 -10.96995 -10.67456 -10.57548 -10.29627 -10.09155 -9.91158 -9.60671 -9.23527 -8.79556 -8.72052 -8.40794 -7.94817 -6.03549 -4.06293 1.39426 1.57748 3.30294 3.37125 3.40436 3.59894 3.85242 4.43382 4.83119 4.91173 5.12986 5.23373 5.26682 5.32658 5.41199 5.48080 5.48916 5.57819 5.68705 5.75224 5.82464 6.12175 6.13040 6.43629 6.45279 6.45979 6.56456 6.61829 6.65415 6.69150 6.88672 6.93758 7.16883 7.24409 7.64610 7.78232 7.88442 7.97272 8.41338 8.96278 9.57971 11.06458 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.058050 B = 0.004258 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.226718 B = 6574.578359 C = 6868.725396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.171 4.171 4 C -0.077 4.077 5 C -0.216 4.216 6 C 0.147 3.853 7 O -0.308 6.308 8 C 0.075 3.925 9 H 0.071 0.929 10 C -0.146 4.146 11 C -0.096 4.096 12 C 0.051 3.949 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.107 4.107 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.260 0.740 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 9.614 -0.599 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.053 4.053 3 C -0.189 4.189 4 C -0.095 4.095 5 C -0.235 4.235 6 C 0.100 3.900 7 O -0.222 6.222 8 C 0.019 3.981 9 H 0.089 0.911 10 C -0.184 4.184 11 C -0.135 4.135 12 C 0.032 3.968 13 H 0.052 0.948 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.145 4.145 23 C -0.182 4.182 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.149 0.851 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.421 9.445 -0.510 17.246 hybrid contribution 0.743 -0.665 0.147 1.008 sum -13.678 8.780 -0.363 16.257 Atomic orbital electron populations 1.20778 0.91103 1.02696 1.02318 1.19649 0.95766 0.92410 0.97477 1.20837 0.94139 0.97245 1.06707 1.20911 0.94100 0.97348 0.97163 1.21401 1.00802 0.92275 1.09012 1.19126 0.91759 0.85571 0.93519 1.86175 1.21979 1.27338 1.86660 1.23716 0.75662 1.00924 0.97761 0.91140 1.22773 0.99607 1.00149 0.95844 1.22076 0.92914 0.97639 1.00830 1.19422 0.88592 0.96748 0.91995 0.94806 1.21113 0.97388 0.92224 1.44482 0.92435 1.24983 0.96952 0.96840 0.95180 1.69966 1.08229 1.30045 1.44595 0.86610 0.78825 0.85013 0.77668 1.20689 1.21272 1.19859 1.22724 0.99048 0.93826 0.98873 1.20300 0.91160 0.98416 1.08324 0.91119 0.91472 0.91554 0.86414 0.86101 0.85120 0.93038 0.91987 0.92564 0.92404 0.93027 0.91183 0.92588 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.05 -0.64 5.88 -104.65 -0.62 -1.25 16 3 C -0.17 -2.01 9.70 -39.56 -0.38 -2.39 16 4 C -0.08 -0.97 10.04 -39.60 -0.40 -1.37 16 5 C -0.22 -3.21 8.86 -39.43 -0.35 -3.56 16 6 C 0.15 2.38 6.66 -39.22 -0.26 2.12 16 7 O -0.31 -5.65 9.85 -19.42 -0.19 -5.84 16 8 C 0.07 1.40 2.69 -25.08 -0.07 1.33 16 9 H 0.07 1.24 6.28 -51.93 -0.33 0.92 16 10 C -0.15 -2.81 6.28 -25.61 -0.16 -2.97 16 11 C -0.10 -2.22 5.60 -25.61 -0.14 -2.37 16 12 C 0.05 1.25 2.72 -90.11 -0.25 1.01 16 13 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.51 -14.00 8.36 -34.44 -0.29 -14.28 16 15 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 16 C 0.06 1.71 5.35 -17.82 -0.10 1.62 16 17 N -0.89 -25.36 12.63 55.43 0.70 -24.66 16 18 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.11 -2.25 6.00 -24.75 -0.15 -2.40 16 23 C -0.16 -2.32 9.64 -39.43 -0.38 -2.70 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 28 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.13 1.93 5.52 -52.49 -0.29 1.64 16 30 H 0.05 0.90 7.69 -51.93 -0.40 0.50 16 31 H 0.06 1.18 8.07 -51.92 -0.42 0.76 16 32 H 0.06 1.38 7.83 -51.93 -0.41 0.97 16 33 H 0.06 1.40 8.06 -51.93 -0.42 0.98 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.07 1.51 8.05 -51.93 -0.42 1.09 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 303.47 15.07 4.57 4.57 Total: -1.00 -28.61 303.47 -8.71 -37.32 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.60 Total: 0.29 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -3.18 Total: -27.84 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.70 Total: -24.66 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.19 Total: -5.84 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.61 -8.71 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260430385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.145 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds