Wall clock time and date at job start Mon Mar 30 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38289 * 119.96853 * 2 1 4 4 C 1.38249 * 120.11300 * 179.72504 * 3 2 1 5 5 C 1.38169 * 120.05202 * 0.54789 * 4 3 2 6 6 C 1.38708 * 119.94425 * 359.72591 * 5 4 3 7 7 O 1.35898 * 120.05531 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00128 * 354.56568 * 7 6 5 9 9 H 1.09003 * 110.43301 * 326.37305 * 8 7 6 10 10 C 1.54268 * 110.48579 * 89.05706 * 8 7 6 11 11 C 1.53872 * 106.60036 * 142.28590 * 10 8 7 12 12 C 1.54272 * 106.59615 * 0.02562 * 11 10 8 13 13 H 1.08996 * 110.48735 * 95.06724 * 12 11 10 14 14 C 1.50701 * 110.48253 * 217.70764 * 12 11 10 15 15 H 1.07997 * 120.00182 * 114.77077 * 14 12 11 16 16 C 1.37874 * 120.00136 * 294.77639 * 14 12 11 17 17 N 1.31520 * 119.99973 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 120.00231 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46903 * 89.99529 * 18 16 14 20 20 H 1.48499 * 109.47152 * 209.99444 * 18 16 14 21 21 H 1.48498 * 109.46846 * 329.99775 * 18 16 14 22 22 C 1.54884 * 104.19591 * 336.38442 * 12 11 10 23 23 C 1.38122 * 119.97781 * 180.27552 * 2 1 3 24 24 H 1.08994 * 109.47148 * 269.72320 * 1 2 3 25 25 H 1.09003 * 109.46349 * 149.72479 * 1 2 3 26 26 H 1.08990 * 109.47333 * 29.72875 * 1 2 3 27 27 H 1.08001 * 119.94771 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.97362 * 180.25682 * 4 3 2 29 29 H 1.07998 * 120.02668 * 179.70560 * 5 4 3 30 30 H 1.08995 * 110.03313 * 261.57621 * 10 8 7 31 31 H 1.09009 * 110.02850 * 23.00243 * 10 8 7 32 32 H 1.08998 * 110.03614 * 240.71638 * 11 10 8 33 33 H 1.09004 * 110.07197 * 119.30341 * 11 10 8 34 34 H 0.97000 * 120.00090 * 180.02562 * 17 16 14 35 35 H 1.09007 * 110.75704 * 279.63334 * 22 12 11 36 36 H 1.08996 * 110.75912 * 156.26427 * 22 12 11 37 37 H 1.08004 * 120.02552 * 359.97361 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2015 0.0057 5 6 4.2752 0.0073 0.0001 6 6 3.5847 -1.1956 -0.0057 7 8 4.2660 -2.3715 -0.0118 8 6 5.6879 -2.2968 -0.1326 9 1 5.9727 -1.4524 -0.7603 10 6 6.3428 -2.1835 1.2596 11 6 7.6349 -3.0174 1.2069 12 6 7.7204 -3.6079 -0.2158 13 1 8.3355 -2.9748 -0.8552 14 6 8.2714 -5.0099 -0.1726 15 1 7.6508 -5.8433 -0.4670 16 6 9.5677 -5.2287 0.2429 17 7 10.3236 -4.2138 0.6011 18 14 10.2504 -6.9666 0.2972 19 1 10.8770 -7.2933 -1.0089 20 1 11.2690 -7.0649 1.3733 21 1 9.1479 -7.9232 0.5703 22 6 6.2533 -3.6170 -0.7121 23 6 2.1971 -1.1964 -0.0058 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3632 -0.8876 -0.5181 26 1 -0.3633 0.8923 -0.5096 27 1 1.6564 2.1325 -0.0004 28 1 4.1174 2.1384 0.0099 29 1 5.3552 0.0106 -0.0003 30 1 6.5791 -1.1420 1.4774 31 1 5.6722 -2.5817 2.0212 32 1 7.5915 -3.8202 1.9428 33 1 8.4988 -2.3812 1.3992 34 1 11.2357 -4.3676 0.8930 35 1 5.7152 -4.4762 -0.3113 36 1 6.2138 -3.6091 -1.8013 37 1 1.6572 -2.1318 -0.0098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260430385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:59 Heat of formation + Delta-G solvation = -51.002038 kcal Electronic energy + Delta-G solvation = -17308.684084 eV Core-core repulsion = 14628.499850 eV Total energy + Delta-G solvation = -2680.184234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27832 -39.26705 -37.42471 -34.37692 -33.38399 -31.18241 -30.09725 -28.82909 -27.76815 -25.89746 -23.45006 -22.77717 -21.10452 -20.88263 -19.00859 -18.23349 -16.96819 -16.80345 -16.69021 -16.42513 -15.44092 -15.27216 -14.87830 -14.34699 -14.29877 -14.05810 -14.00910 -13.48528 -13.12235 -12.93141 -12.77668 -12.63716 -12.47577 -12.38206 -12.16564 -11.90505 -11.61921 -11.53760 -11.35890 -11.08590 -10.81872 -10.50823 -9.70951 -9.07684 -8.14709 -6.24176 0.39343 0.53350 1.41283 1.42076 1.52438 2.27721 2.44619 2.83329 3.16577 3.73431 3.83171 3.94270 3.97965 4.07364 4.21755 4.33895 4.45801 4.53306 4.61554 4.72628 4.81852 4.86646 4.88140 4.93623 4.96254 5.04485 5.08501 5.26676 5.32822 5.33614 5.46979 5.54510 5.61983 5.67840 5.82592 5.91524 5.96672 6.34114 6.56825 6.85242 7.43308 8.94818 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.058050 B = 0.004258 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.226718 B = 6574.578359 C = 6868.725396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.053 4.053 3 C -0.166 4.166 4 C -0.080 4.080 5 C -0.231 4.231 6 C 0.113 3.887 7 O -0.324 6.324 8 C 0.089 3.911 9 H 0.083 0.917 10 C -0.134 4.134 11 C -0.087 4.087 12 C 0.043 3.957 13 H 0.010 0.990 14 C -0.534 4.534 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.954 3.046 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.101 4.101 23 C -0.177 4.177 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.126 0.874 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.402 10.791 -0.678 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.184 4.184 4 C -0.097 4.097 5 C -0.250 4.250 6 C 0.068 3.932 7 O -0.238 6.238 8 C 0.033 3.967 9 H 0.100 0.900 10 C -0.172 4.172 11 C -0.125 4.125 12 C 0.024 3.976 13 H 0.028 0.972 14 C -0.572 4.572 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.558 5.558 18 Si 0.780 3.220 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.193 1.193 22 C -0.139 4.139 23 C -0.196 4.196 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.168 0.832 28 H 0.164 0.836 29 H 0.144 0.856 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.294 10.628 -0.594 19.463 hybrid contribution 1.224 -0.940 0.158 1.551 sum -15.070 9.688 -0.437 17.920 Atomic orbital electron populations 1.20856 0.88529 1.03954 1.03419 1.20085 0.97650 0.91714 0.95854 1.21280 0.93987 0.98429 1.04686 1.21262 0.94843 0.97494 0.96148 1.21487 1.00769 0.92786 1.09956 1.19434 0.92528 0.85232 0.95988 1.86110 1.21135 1.28958 1.87591 1.23373 0.76544 0.99686 0.97075 0.89959 1.22629 0.97462 1.00500 0.96573 1.21849 0.94356 0.97053 0.99244 1.19382 0.90359 0.95272 0.92575 0.97167 1.21476 0.97876 0.93407 1.44458 0.92768 1.25754 0.97298 1.00673 0.94848 1.70079 1.08466 1.31942 1.45286 0.85608 0.78139 0.80422 0.77831 1.19995 1.20888 1.19319 1.22540 0.96815 0.95086 0.99431 1.20543 0.90577 0.99696 1.08754 0.89937 0.91013 0.89600 0.83234 0.83584 0.85603 0.90976 0.91792 0.94818 0.94235 0.92976 0.92053 0.91723 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 71.24 0.71 -0.84 16 2 C -0.05 -1.13 5.88 -19.88 -0.12 -1.25 16 3 C -0.17 -3.30 9.70 22.28 0.22 -3.09 16 4 C -0.08 -1.79 10.04 22.26 0.22 -1.57 16 5 C -0.23 -6.58 8.86 22.37 0.20 -6.38 16 6 C 0.11 3.60 6.66 22.51 0.15 3.75 16 7 O -0.32 -11.85 9.85 -92.40 -0.91 -12.76 16 8 C 0.09 3.33 2.69 31.66 0.09 3.42 16 9 H 0.08 2.88 6.28 -2.39 -0.01 2.86 16 10 C -0.13 -5.16 6.28 31.32 0.20 -4.97 16 11 C -0.09 -4.12 5.60 31.32 0.18 -3.95 16 12 C 0.04 2.16 2.72 -10.46 -0.03 2.13 16 13 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 14 C -0.53 -29.81 8.36 25.60 0.21 -29.59 16 15 H 0.05 2.98 7.77 -2.91 -0.02 2.96 16 16 C 0.01 0.74 5.35 84.65 0.45 1.19 16 17 N -0.92 -53.52 12.63 21.45 0.27 -53.25 16 18 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C -0.10 -4.33 6.00 31.88 0.19 -4.14 16 23 C -0.18 -4.82 9.64 22.37 0.22 -4.60 16 24 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 26 H 0.09 0.88 8.08 -2.39 -0.02 0.87 16 27 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 28 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.13 3.60 5.52 -2.91 -0.02 3.58 16 30 H 0.07 2.47 7.69 -2.39 -0.02 2.46 16 31 H 0.06 2.43 8.07 -2.38 -0.02 2.42 16 32 H 0.03 1.71 7.83 -2.39 -0.02 1.69 16 33 H 0.04 1.97 8.06 -2.39 -0.02 1.96 16 34 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.06 2.70 8.05 -2.38 -0.02 2.68 16 36 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -62.30 303.47 5.31 -56.99 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.03 Total: 12.94 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 2.89 Total: -49.87 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.27 Total: -53.25 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.91 Total: -12.76 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -62.30 5.31 -56.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260430385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.990 kcal (2) G-P(sol) polarization free energy of solvation -62.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds