Wall clock time and date at job start Mon Mar 30 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38288 * 119.97006 * 2 1 4 4 C 1.38241 * 120.10786 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.05849 * 359.67616 * 4 3 2 6 6 C 1.38707 * 119.94325 * 0.61942 * 5 4 3 7 7 O 1.35900 * 120.05725 * 179.67891 * 6 5 4 8 8 C 1.42909 * 116.99686 * 174.28957 * 7 6 5 9 9 H 1.08995 * 110.43779 * 322.40659 * 8 7 6 10 10 C 1.54885 * 110.48416 * 84.95274 * 8 7 6 11 11 C 1.54885 * 102.74737 * 156.61799 * 10 8 7 12 12 C 1.54261 * 104.19817 * 322.05487 * 11 10 8 13 13 H 1.09000 * 110.03447 * 264.27823 * 12 11 10 14 14 C 1.50703 * 110.03515 * 142.89427 * 12 11 10 15 15 H 1.08001 * 119.99753 * 245.20676 * 14 12 11 16 16 C 1.37868 * 119.99926 * 65.20542 * 14 12 11 17 17 N 1.31519 * 120.00328 * 8.08230 * 16 14 12 18 18 Si 1.86805 * 119.99980 * 188.08569 * 16 14 12 19 19 H 1.48502 * 109.47364 * 84.97686 * 18 16 14 20 20 H 1.48499 * 109.46847 * 324.97299 * 18 16 14 21 21 H 1.48508 * 109.46861 * 204.97676 * 18 16 14 22 22 C 1.53878 * 106.59804 * 23.61081 * 12 11 10 23 23 C 1.38127 * 119.97127 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46720 * 269.98128 * 1 2 3 25 25 H 1.08997 * 109.46694 * 29.97813 * 1 2 3 26 26 H 1.08995 * 109.46868 * 149.98139 * 1 2 3 27 27 H 1.08000 * 119.94591 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.97289 * 179.97438 * 4 3 2 29 29 H 1.08008 * 120.02798 * 180.29957 * 5 4 3 30 30 H 1.09002 * 110.76026 * 38.30053 * 10 8 7 31 31 H 1.08998 * 110.75524 * 274.93374 * 10 8 7 32 32 H 1.09005 * 110.48812 * 203.37719 * 11 10 8 33 33 H 1.09004 * 110.60235 * 80.78814 * 11 10 8 34 34 H 0.96996 * 120.00166 * 179.97438 * 17 16 14 35 35 H 1.08998 * 110.03698 * 119.28646 * 22 12 11 36 36 H 1.09001 * 110.03046 * 240.71578 * 22 12 11 37 37 H 1.07990 * 120.02836 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 0.0057 6 6 3.5847 -1.1958 -0.0005 7 8 4.2659 -2.3717 -0.0010 8 6 3.4942 -3.5686 0.1192 9 1 2.6619 -3.4173 0.8065 10 6 2.9761 -4.0210 -1.2685 11 6 2.7317 -5.5368 -1.0645 12 6 3.8974 -5.9898 -0.1613 13 1 4.7049 -6.3967 -0.7699 14 6 3.4171 -7.0283 0.8195 15 1 3.4142 -6.8113 1.8775 16 6 2.9815 -8.2553 0.3662 17 7 3.1319 -8.5801 -0.8993 18 14 2.1775 -9.4565 1.5496 19 1 0.7303 -9.1441 1.6649 20 1 2.8172 -9.3392 2.8846 21 1 2.3459 -10.8411 1.0399 22 6 4.3823 -4.7383 0.5913 23 6 2.1971 -1.1966 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3632 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6565 2.1325 -0.0004 28 1 4.1176 2.1382 -0.0010 29 1 5.3553 0.0103 0.0102 30 1 3.7305 -3.8513 -2.0368 31 1 2.0464 -3.5101 -1.5191 32 1 2.7637 -6.0605 -2.0200 33 1 1.7762 -5.7079 -0.5686 34 1 2.8257 -9.4435 -1.2181 35 1 4.2703 -4.8820 1.6659 36 1 5.4255 -4.5371 0.3479 37 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260430390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:01 Heat of formation + Delta-G solvation = -36.903753 kcal Electronic energy + Delta-G solvation = -17479.919735 eV Core-core repulsion = 14800.346849 eV Total energy + Delta-G solvation = -2679.572886 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.06316 -37.92803 -35.86466 -32.69747 -32.17059 -29.86144 -28.31620 -27.44255 -26.62882 -24.05985 -22.27225 -21.35600 -19.91200 -19.00169 -17.68297 -16.44939 -16.00470 -15.60332 -14.85346 -14.48876 -14.33271 -13.82832 -13.49943 -13.37164 -13.01169 -12.57215 -12.44736 -12.08873 -11.98818 -11.49799 -11.38226 -11.22726 -10.86650 -10.79369 -10.59844 -10.26623 -10.12004 -9.82808 -9.62404 -9.31537 -8.84256 -8.71571 -8.37386 -7.93005 -6.04589 -4.05966 1.41569 1.58532 3.29387 3.36282 3.38688 3.62452 3.86819 4.42308 4.81106 4.91252 5.17014 5.23840 5.30206 5.39990 5.43120 5.43925 5.55701 5.68506 5.71146 5.74644 5.80913 6.14954 6.17959 6.40368 6.44691 6.47253 6.54819 6.57254 6.67564 6.68392 6.90409 6.97509 7.10120 7.23287 7.61912 7.81423 7.85077 7.96264 8.41160 8.96607 9.57441 11.05496 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036562 B = 0.004885 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.645196 B = 5731.020722 C = 6045.313116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.171 4.171 4 C -0.081 4.081 5 C -0.169 4.169 6 C 0.147 3.853 7 O -0.310 6.310 8 C 0.080 3.920 9 H 0.071 0.929 10 C -0.149 4.149 11 C -0.096 4.096 12 C 0.046 3.954 13 H 0.038 0.962 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.887 3.113 19 H -0.280 1.280 20 H -0.275 1.275 21 H -0.287 1.287 22 C -0.107 4.107 23 C -0.211 4.211 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 16.452 0.650 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.190 4.190 4 C -0.099 4.099 5 C -0.187 4.187 6 C 0.101 3.899 7 O -0.224 6.224 8 C 0.024 3.976 9 H 0.089 0.911 10 C -0.187 4.187 11 C -0.135 4.135 12 C 0.028 3.972 13 H 0.056 0.944 14 C -0.555 4.555 15 H 0.075 0.925 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.715 3.285 19 H -0.206 1.206 20 H -0.200 1.200 21 H -0.213 1.213 22 C -0.145 4.145 23 C -0.229 4.229 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.580 16.232 0.509 16.444 hybrid contribution -0.705 -0.794 0.563 1.202 sum -3.286 15.438 1.072 15.820 Atomic orbital electron populations 1.20817 0.91304 1.02760 1.02363 1.19711 0.95853 0.92598 0.96776 1.20835 0.94193 0.97209 1.06740 1.20864 0.94068 0.97033 0.97899 1.20436 1.00234 0.89986 1.08068 1.19118 0.90566 0.86692 0.93566 1.86158 1.36944 1.12586 1.86692 1.23648 0.94425 0.81776 0.97726 0.91065 1.23139 0.99763 0.99736 0.96086 1.22306 1.00553 0.89886 1.00720 1.19227 0.94058 0.90205 0.93723 0.94427 1.21247 1.42995 0.98363 0.92933 0.92536 1.24975 0.95896 0.97798 0.95127 1.69974 1.46155 1.22044 1.14413 0.86684 0.80030 0.80353 0.81398 1.20607 1.19951 1.21315 1.22400 0.97967 0.93256 1.00827 1.21319 0.93388 0.99048 1.09161 0.91085 0.91577 0.91394 0.86437 0.85840 0.85559 0.91499 0.92885 0.92195 0.92636 0.92988 0.91713 0.92486 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.05 -0.64 5.88 -104.64 -0.62 -1.25 16 3 C -0.17 -2.02 9.70 -39.56 -0.38 -2.41 16 4 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 5 C -0.17 -2.37 9.99 -39.43 -0.39 -2.76 16 6 C 0.15 2.39 6.62 -39.22 -0.26 2.13 16 7 O -0.31 -5.68 9.86 -19.43 -0.19 -5.87 16 8 C 0.08 1.50 2.71 -25.07 -0.07 1.43 16 9 H 0.07 1.30 6.54 -51.93 -0.34 0.96 16 10 C -0.15 -2.84 6.20 -24.74 -0.15 -3.00 16 11 C -0.10 -2.19 5.77 -25.08 -0.14 -2.33 16 12 C 0.05 1.14 2.72 -90.65 -0.25 0.89 16 13 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.52 -13.96 8.32 -34.44 -0.29 -14.24 16 15 H 0.06 1.50 7.34 -52.49 -0.39 1.12 16 16 C 0.06 1.76 5.27 -17.82 -0.09 1.66 16 17 N -0.89 -25.32 12.93 55.43 0.72 -24.60 16 18 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.11 -2.25 6.21 -25.61 -0.16 -2.41 16 23 C -0.21 -3.18 8.32 -39.43 -0.33 -3.51 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 26 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 28 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 29 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 0.91 7.18 -51.93 -0.37 0.54 16 32 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.05 1.30 7.85 -51.93 -0.41 0.89 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.06 1.36 7.37 -51.93 -0.38 0.97 16 36 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 37 H 0.13 2.01 5.26 -52.49 -0.28 1.73 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -28.47 302.24 -8.63 -37.10 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.52 Total: 0.77 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -3.17 Total: -27.96 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.72 Total: -24.60 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.19 Total: -5.87 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.47 -8.63 -37.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260430390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.198 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds