Wall clock time and date at job start Mon Mar 30 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38288 * 119.97006 * 2 1 4 4 C 1.38241 * 120.10786 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.05849 * 359.67616 * 4 3 2 6 6 C 1.38707 * 119.94325 * 0.61942 * 5 4 3 7 7 O 1.35900 * 120.05725 * 179.67891 * 6 5 4 8 8 C 1.42909 * 116.99686 * 174.28957 * 7 6 5 9 9 H 1.08995 * 110.43779 * 322.40659 * 8 7 6 10 10 C 1.54885 * 110.48416 * 84.95274 * 8 7 6 11 11 C 1.54885 * 102.74737 * 156.61799 * 10 8 7 12 12 C 1.54261 * 104.19817 * 322.05487 * 11 10 8 13 13 H 1.09000 * 110.03447 * 264.27823 * 12 11 10 14 14 C 1.50703 * 110.03515 * 142.89427 * 12 11 10 15 15 H 1.08001 * 119.99753 * 245.20676 * 14 12 11 16 16 C 1.37868 * 119.99926 * 65.20542 * 14 12 11 17 17 N 1.31519 * 120.00328 * 8.08230 * 16 14 12 18 18 Si 1.86805 * 119.99980 * 188.08569 * 16 14 12 19 19 H 1.48502 * 109.47364 * 84.97686 * 18 16 14 20 20 H 1.48499 * 109.46847 * 324.97299 * 18 16 14 21 21 H 1.48508 * 109.46861 * 204.97676 * 18 16 14 22 22 C 1.53878 * 106.59804 * 23.61081 * 12 11 10 23 23 C 1.38127 * 119.97127 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46720 * 269.98128 * 1 2 3 25 25 H 1.08997 * 109.46694 * 29.97813 * 1 2 3 26 26 H 1.08995 * 109.46868 * 149.98139 * 1 2 3 27 27 H 1.08000 * 119.94591 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.97289 * 179.97438 * 4 3 2 29 29 H 1.08008 * 120.02798 * 180.29957 * 5 4 3 30 30 H 1.09002 * 110.76026 * 38.30053 * 10 8 7 31 31 H 1.08998 * 110.75524 * 274.93374 * 10 8 7 32 32 H 1.09005 * 110.48812 * 203.37719 * 11 10 8 33 33 H 1.09004 * 110.60235 * 80.78814 * 11 10 8 34 34 H 0.96996 * 120.00166 * 179.97438 * 17 16 14 35 35 H 1.08998 * 110.03698 * 119.28646 * 22 12 11 36 36 H 1.09001 * 110.03046 * 240.71578 * 22 12 11 37 37 H 1.07990 * 120.02836 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 0.0057 6 6 3.5847 -1.1958 -0.0005 7 8 4.2659 -2.3717 -0.0010 8 6 3.4942 -3.5686 0.1192 9 1 2.6619 -3.4173 0.8065 10 6 2.9761 -4.0210 -1.2685 11 6 2.7317 -5.5368 -1.0645 12 6 3.8974 -5.9898 -0.1613 13 1 4.7049 -6.3967 -0.7699 14 6 3.4171 -7.0283 0.8195 15 1 3.4142 -6.8113 1.8775 16 6 2.9815 -8.2553 0.3662 17 7 3.1319 -8.5801 -0.8993 18 14 2.1775 -9.4565 1.5496 19 1 0.7303 -9.1441 1.6649 20 1 2.8172 -9.3392 2.8846 21 1 2.3459 -10.8411 1.0399 22 6 4.3823 -4.7383 0.5913 23 6 2.1971 -1.1966 -0.0005 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3632 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6565 2.1325 -0.0004 28 1 4.1176 2.1382 -0.0010 29 1 5.3553 0.0103 0.0102 30 1 3.7305 -3.8513 -2.0368 31 1 2.0464 -3.5101 -1.5191 32 1 2.7637 -6.0605 -2.0200 33 1 1.7762 -5.7079 -0.5686 34 1 2.8257 -9.4435 -1.2181 35 1 4.2703 -4.8820 1.6659 36 1 5.4255 -4.5371 0.3479 37 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260430390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:01 Heat of formation + Delta-G solvation = -50.684179 kcal Electronic energy + Delta-G solvation = -17480.517299 eV Core-core repulsion = 14800.346849 eV Total energy + Delta-G solvation = -2680.170451 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.29081 -39.23827 -37.43472 -34.40177 -33.43959 -30.97150 -30.12679 -28.98307 -27.71040 -25.95211 -23.47646 -22.41099 -21.47657 -20.79075 -19.01270 -18.40680 -17.17634 -16.69674 -16.56381 -16.11224 -15.63245 -15.16311 -14.83499 -14.43441 -14.24791 -14.06280 -13.89236 -13.68806 -13.20390 -12.98685 -12.67618 -12.63303 -12.47054 -12.32563 -12.16696 -11.89478 -11.61714 -11.50437 -11.33579 -11.18529 -10.85669 -10.47294 -9.71985 -9.05210 -8.14836 -6.23028 0.41439 0.54113 1.41724 1.42451 1.51904 2.30161 2.43423 2.84962 3.16169 3.73985 3.80348 3.90666 3.99179 4.11058 4.21839 4.37914 4.47933 4.54037 4.67802 4.72075 4.82687 4.83377 4.83582 4.89241 4.95150 5.01057 5.08187 5.25372 5.29836 5.36139 5.47437 5.54315 5.62751 5.69782 5.81509 5.90338 5.97735 6.33959 6.56805 6.87079 7.43854 8.95139 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036562 B = 0.004885 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.645196 B = 5731.020722 C = 6045.313116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.056 4.056 3 C -0.166 4.166 4 C -0.076 4.076 5 C -0.180 4.180 6 C 0.113 3.887 7 O -0.325 6.325 8 C 0.094 3.906 9 H 0.078 0.922 10 C -0.135 4.135 11 C -0.088 4.088 12 C 0.039 3.961 13 H 0.003 0.997 14 C -0.534 4.534 15 H 0.056 0.944 16 C 0.015 3.985 17 N -0.920 5.920 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.268 1.268 21 H -0.285 1.285 22 C -0.102 4.102 23 C -0.227 4.227 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.150 0.850 28 H 0.158 0.842 29 H 0.133 0.867 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 18.809 1.408 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.184 4.184 4 C -0.093 4.093 5 C -0.199 4.199 6 C 0.068 3.932 7 O -0.239 6.239 8 C 0.038 3.962 9 H 0.096 0.904 10 C -0.172 4.172 11 C -0.126 4.126 12 C 0.021 3.979 13 H 0.021 0.979 14 C -0.572 4.572 15 H 0.075 0.925 16 C -0.184 4.184 17 N -0.559 5.559 18 Si 0.777 3.223 19 H -0.198 1.198 20 H -0.193 1.193 21 H -0.211 1.211 22 C -0.140 4.140 23 C -0.245 4.245 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.168 0.832 28 H 0.175 0.825 29 H 0.150 0.850 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.750 18.610 1.273 19.027 hybrid contribution -0.320 -1.405 0.316 1.475 sum -4.071 17.206 1.589 17.752 Atomic orbital electron populations 1.20876 0.89377 1.03675 1.03243 1.20089 0.97406 0.92252 0.95906 1.21282 0.94400 0.98042 1.04686 1.21285 0.94450 0.97455 0.96133 1.20707 1.00870 0.90073 1.08203 1.19447 0.91364 0.86350 0.96088 1.86094 1.37194 1.12979 1.87630 1.23281 0.93825 0.81795 0.97264 0.90413 1.22988 1.00824 0.96933 0.96497 1.22075 0.99172 0.92409 0.98934 1.19193 0.93653 0.91408 0.93676 0.97919 1.21597 1.42977 0.99256 0.93347 0.92544 1.25748 0.96361 0.99605 0.96689 1.70099 1.47090 1.22554 1.16145 0.85664 0.79230 0.77965 0.79398 1.19806 1.19256 1.21117 1.22218 0.98523 0.92959 1.00267 1.21379 0.93063 0.99807 1.10283 0.90121 0.89451 0.91758 0.83246 0.82466 0.84956 0.91600 0.90694 0.94347 0.93682 0.92983 0.91781 0.92297 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 10.01 71.24 0.71 -1.28 16 2 C -0.06 -1.31 5.88 -19.88 -0.12 -1.43 16 3 C -0.17 -3.29 9.70 22.28 0.22 -3.07 16 4 C -0.08 -1.54 10.04 22.25 0.22 -1.32 16 5 C -0.18 -4.75 9.99 22.36 0.22 -4.53 16 6 C 0.11 3.57 6.62 22.51 0.15 3.72 16 7 O -0.32 -11.85 9.86 -92.43 -0.91 -12.76 16 8 C 0.09 3.56 2.71 31.67 0.09 3.64 16 9 H 0.08 2.83 6.54 -2.39 -0.02 2.81 16 10 C -0.13 -5.15 6.20 31.88 0.20 -4.95 16 11 C -0.09 -4.09 5.77 31.67 0.18 -3.91 16 12 C 0.04 2.00 2.72 -10.82 -0.03 1.97 16 13 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 14 C -0.53 -29.43 8.32 25.60 0.21 -29.21 16 15 H 0.06 3.04 7.34 -2.91 -0.02 3.02 16 16 C 0.02 0.83 5.27 84.65 0.45 1.28 16 17 N -0.92 -53.80 12.93 21.44 0.28 -53.53 16 18 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 22 C -0.10 -4.39 6.21 31.32 0.19 -4.20 16 23 C -0.23 -6.58 8.32 22.37 0.19 -6.39 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 1.13 8.08 -2.39 -0.02 1.11 16 26 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 27 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 28 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 29 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.53 7.18 -2.39 -0.02 2.51 16 32 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.04 2.16 7.85 -2.39 -0.02 2.14 16 34 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.06 2.73 7.37 -2.39 -0.02 2.71 16 36 H 0.06 2.46 8.07 -2.39 -0.02 2.44 16 37 H 0.12 3.68 5.26 -2.92 -0.02 3.66 16 Total: -1.00 -62.15 302.24 5.32 -56.83 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.04 Total: 13.67 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 2.89 Total: -49.68 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.28 Total: -53.53 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.91 Total: -12.76 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -62.15 5.32 -56.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260430390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.146 kcal (2) G-P(sol) polarization free energy of solvation -62.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds