Wall clock time and date at job start Mon Mar 30 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38286 * 119.97346 * 2 1 4 4 C 1.38249 * 120.11187 * 179.77058 * 3 2 1 5 5 C 1.50692 * 119.97133 * 180.23050 * 4 3 2 6 6 C 1.38167 * 120.05015 * 0.46097 * 4 3 2 7 7 C 1.50705 * 120.02246 * 179.79186 * 6 4 3 8 8 C 1.50701 * 115.56324 * 281.85200 * 7 6 4 9 9 H 1.07998 * 119.99808 * 140.26507 * 8 7 6 10 10 C 1.37875 * 119.99710 * 320.26685 * 8 7 6 11 11 N 1.31513 * 120.00221 * 348.48137 * 10 8 7 12 12 Si 1.86805 * 119.99626 * 168.48415 * 10 8 7 13 13 H 1.48494 * 109.47015 * 90.00032 * 12 10 8 14 14 H 1.48499 * 109.46734 * 209.99850 * 12 10 8 15 15 H 1.48496 * 109.46992 * 329.99604 * 12 10 8 16 16 C 1.53003 * 117.49826 * 136.16443 * 7 6 4 17 17 C 1.52999 * 59.99916 * 252.51012 * 16 7 6 18 18 C 1.38710 * 119.94864 * 359.51918 * 6 4 3 19 19 O 1.35893 * 120.05692 * 180.23391 * 18 6 4 20 20 C 1.38125 * 119.96788 * 179.97438 * 2 1 3 21 21 C 1.50701 * 120.03225 * 359.97438 * 20 2 1 22 22 H 1.08995 * 109.46811 * 270.02657 * 1 2 3 23 23 H 1.09001 * 109.47087 * 30.02058 * 1 2 3 24 24 H 1.08993 * 109.47139 * 150.02236 * 1 2 3 25 25 H 1.08002 * 119.94164 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.47584 * 273.47631 * 5 4 3 27 27 H 1.09003 * 109.47138 * 33.47917 * 5 4 3 28 28 H 1.09003 * 109.46760 * 153.47297 * 5 4 3 29 29 H 0.97003 * 120.00055 * 185.01553 * 11 10 8 30 30 H 1.09007 * 117.49793 * 359.97438 * 16 7 6 31 31 H 1.08998 * 117.50053 * 145.01528 * 16 7 6 32 32 H 1.08998 * 117.49774 * 252.50596 * 17 16 7 33 33 H 1.09006 * 117.50335 * 107.48882 * 17 16 7 34 34 H 0.96697 * 114.00650 * 89.99779 * 19 18 6 35 35 H 1.09002 * 109.46949 * 270.02527 * 21 20 2 36 36 H 1.08997 * 109.46590 * 30.01903 * 21 20 2 37 37 H 1.08999 * 109.47086 * 150.02226 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2013 0.0048 5 6 4.3300 2.5085 0.0100 6 6 4.2752 0.0070 0.0000 7 6 5.7822 0.0114 0.0004 8 6 6.4321 0.2981 -1.3287 9 1 7.3122 0.9223 -1.3759 10 6 5.9031 -0.2364 -2.4842 11 7 4.9796 -1.1701 -2.4141 12 14 6.4983 0.3655 -4.1495 13 1 7.6513 -0.4595 -4.5909 14 1 5.3981 0.2489 -5.1400 15 1 6.9184 1.7857 -4.0412 16 6 6.4912 -0.9695 0.9365 17 6 6.4868 0.5266 1.2571 18 6 3.5846 -1.1959 0.0004 19 8 4.2657 -2.3718 0.0005 20 6 2.1970 -1.1966 0.0005 21 6 1.4435 -2.5017 0.0017 22 1 -0.3633 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5134 25 1 1.6565 2.1324 0.0004 26 1 4.4603 2.8568 -1.0145 27 1 3.7652 3.2490 0.5765 28 1 5.3068 2.3653 0.4721 29 1 4.6598 -1.5977 -3.2240 30 1 5.8676 -1.6177 1.5523 31 1 7.4277 -1.4074 0.5910 32 1 7.4203 1.0729 1.1225 33 1 5.8603 0.8624 2.0835 34 1 4.4632 -2.7120 0.8838 35 1 1.2618 -2.8154 1.0297 36 1 0.4911 -2.3717 -0.5121 37 1 2.0326 -3.2618 -0.5115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260454356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:12 Heat of formation + Delta-G solvation = -17.224983 kcal Electronic energy + Delta-G solvation = -18758.566648 eV Core-core repulsion = 16079.847097 eV Total energy + Delta-G solvation = -2678.719551 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.00572 -37.93747 -37.42722 -34.36190 -34.03831 -31.53269 -29.90318 -28.03161 -27.22873 -25.47456 -23.04112 -22.66521 -21.86014 -20.20884 -18.25048 -18.11182 -16.90393 -16.54380 -16.13372 -15.51726 -15.20955 -14.59697 -14.53975 -14.09111 -13.93417 -13.54718 -13.45553 -13.39029 -13.10400 -12.92059 -12.81625 -12.54967 -12.38910 -12.14319 -12.10551 -11.89880 -11.69218 -11.42250 -11.06657 -10.84776 -10.31864 -9.98747 -8.90626 -8.84573 -7.85401 -6.05071 0.75458 0.86227 1.37113 1.40834 1.48382 2.44112 3.05279 3.12861 3.65862 3.78860 4.14881 4.21444 4.25277 4.46425 4.58306 4.63034 4.73592 4.75443 4.82986 4.87482 4.92312 4.94733 4.96646 5.04303 5.16238 5.17962 5.22794 5.30891 5.39953 5.57821 5.64075 5.71550 5.78686 5.91353 6.04024 6.23942 6.42528 6.48071 6.90330 7.38567 7.53418 9.01956 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.010195 C = 0.009784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.197059 B = 2745.913857 C = 2861.091538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.102 4.102 3 C -0.153 4.153 4 C -0.098 4.098 5 C -0.099 4.099 6 C -0.039 4.039 7 C 0.078 3.922 8 C -0.514 4.514 9 H 0.048 0.952 10 C 0.036 3.964 11 N -0.855 5.855 12 Si 0.930 3.070 13 H -0.280 1.280 14 H -0.289 1.289 15 H -0.269 1.269 16 C -0.190 4.190 17 C -0.191 4.191 18 C 0.150 3.850 19 O -0.476 6.476 20 C -0.155 4.155 21 C -0.095 4.095 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.131 0.869 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.250 0.750 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.370 0.630 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 1.491 6.846 10.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.102 4.102 3 C -0.171 4.171 4 C -0.098 4.098 5 C -0.155 4.155 6 C -0.040 4.040 7 C 0.077 3.923 8 C -0.551 4.551 9 H 0.066 0.934 10 C -0.168 4.168 11 N -0.489 5.489 12 Si 0.757 3.243 13 H -0.206 1.206 14 H -0.215 1.215 15 H -0.194 1.194 16 C -0.228 4.228 17 C -0.228 4.228 18 C 0.105 3.895 19 O -0.285 6.285 20 C -0.156 4.156 21 C -0.151 4.151 22 H 0.099 0.901 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.149 0.851 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.224 0.776 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.125 1.460 6.102 10.266 hybrid contribution 0.920 -0.023 -0.800 1.219 sum -7.206 1.437 5.302 9.061 Atomic orbital electron populations 1.20758 0.89244 1.02938 1.02822 1.19779 0.97147 0.91760 1.01497 1.20920 0.93014 0.97999 1.05131 1.19817 0.93960 0.95277 1.00728 1.20658 1.00237 0.93396 1.01235 1.19536 0.94817 0.92121 0.97549 1.17443 0.87526 0.98262 0.89048 1.20529 1.11956 1.32002 0.90603 0.93397 1.25539 0.95131 0.94986 1.01144 1.70225 1.28500 1.22673 1.27530 0.85989 0.77654 0.79176 0.81469 1.20602 1.21549 1.19412 1.22897 1.02463 0.91369 1.06051 1.22957 1.02293 0.96907 1.00670 1.18018 0.88810 0.85071 0.97588 1.85040 1.76640 1.35829 1.30960 1.20231 0.92922 0.96670 1.05786 1.20571 0.99246 0.93150 1.02148 0.90096 0.91240 0.91030 0.85089 0.93183 0.90660 0.91519 0.94051 0.90457 0.91776 0.90378 0.89749 0.77587 0.90543 0.90547 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.58 9.60 71.24 0.68 -1.90 16 2 C -0.10 -3.62 5.88 -19.88 -0.12 -3.74 16 3 C -0.15 -5.72 9.37 22.28 0.21 -5.51 16 4 C -0.10 -4.18 5.87 -19.88 -0.12 -4.29 16 5 C -0.10 -3.78 9.55 71.23 0.68 -3.10 16 6 C -0.04 -1.86 3.91 -19.77 -0.08 -1.93 16 7 C 0.08 3.78 0.79 -53.67 -0.04 3.74 16 8 C -0.51 -28.22 8.89 25.60 0.23 -27.99 16 9 H 0.05 2.65 7.84 -2.91 -0.02 2.63 16 10 C 0.04 2.01 5.23 84.65 0.44 2.46 16 11 N -0.86 -49.18 10.15 21.45 0.22 -48.97 16 12 Si 0.93 44.47 29.56 68.60 2.03 46.50 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 14 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 16 C -0.19 -8.42 8.82 30.59 0.27 -8.15 16 17 C -0.19 -8.01 8.06 30.59 0.25 -7.76 16 18 C 0.15 6.76 5.15 22.51 0.12 6.87 16 19 O -0.48 -21.32 10.07 -92.34 -0.93 -22.25 16 20 C -0.16 -6.07 5.89 -19.77 -0.12 -6.19 16 21 C -0.09 -2.98 9.38 71.24 0.67 -2.31 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.07 1.60 8.09 -2.39 -0.02 1.58 16 24 H 0.07 1.70 5.94 -2.39 -0.01 1.69 16 25 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 2.31 8.11 -2.39 -0.02 2.29 16 28 H 0.07 2.64 5.37 -2.39 -0.01 2.63 16 29 H 0.25 14.25 8.32 -92.71 -0.77 13.48 16 30 H 0.08 3.08 6.30 -2.38 -0.02 3.06 16 31 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.08 3.21 8.13 -2.38 -0.02 3.19 16 34 H 0.37 13.22 7.61 -74.06 -0.56 12.66 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 2.08 5.95 -2.39 -0.01 2.07 16 37 H 0.05 1.75 7.53 -2.39 -0.02 1.73 16 Total: -1.00 -63.98 295.44 4.90 -59.08 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.51 Total: 25.45 kcal Atomic # 6 Polarization: -62.89 SS G_CDS: 3.07 Total: -59.82 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.22 Total: -48.97 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.93 Total: -22.25 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -63.98 4.90 -59.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260454356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.859 kcal (2) G-P(sol) polarization free energy of solvation -63.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds