Wall clock time and date at job start Mon Mar 30 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47151 * 2 1 4 4 O 1.42904 * 109.46931 * 240.00051 * 2 1 3 5 5 C 1.50699 * 109.46834 * 120.00009 * 2 1 3 6 6 C 1.38253 * 120.00193 * 299.59016 * 5 2 1 7 7 C 1.38218 * 120.00084 * 179.81307 * 6 5 2 8 8 C 1.38251 * 119.99793 * 0.39726 * 7 6 5 9 9 C 1.38212 * 120.00274 * 359.85637 * 8 7 6 10 10 C 1.50706 * 120.00488 * 179.97438 * 9 8 7 11 11 C 1.50697 * 115.55001 * 114.33221 * 10 9 8 12 12 H 1.07999 * 119.99840 * 95.19265 * 11 10 9 13 13 C 1.37883 * 120.00044 * 275.19059 * 11 10 9 14 14 N 1.31508 * 119.99791 * 5.50676 * 13 11 10 15 15 Si 1.86797 * 119.99973 * 185.50154 * 13 11 10 16 16 H 1.48498 * 109.47108 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46686 * 120.00285 * 15 13 11 18 18 H 1.48495 * 109.47342 * 240.00083 * 15 13 11 19 19 C 1.52997 * 117.49250 * 328.66556 * 10 9 8 20 20 C 1.52995 * 117.49799 * 260.00853 * 10 9 8 21 21 C 1.38215 * 119.99811 * 119.86688 * 5 2 1 22 22 H 1.09004 * 109.47032 * 299.99887 * 1 2 3 23 23 H 1.08994 * 109.46977 * 60.00000 * 1 2 3 24 24 H 1.08999 * 109.46988 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47162 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47032 * 299.99857 * 3 2 1 27 27 H 1.09004 * 109.47060 * 60.00130 * 3 2 1 28 28 H 0.96697 * 113.99691 * 174.21296 * 4 2 1 29 29 H 1.08000 * 119.99973 * 359.97438 * 6 5 2 30 30 H 1.08001 * 119.99911 * 180.22505 * 7 6 5 31 31 H 1.08003 * 120.00222 * 179.83237 * 8 7 6 32 32 H 0.97002 * 120.00022 * 184.99601 * 14 13 11 33 33 H 1.08994 * 117.50488 * 359.97438 * 19 10 9 34 34 H 1.09003 * 117.49843 * 145.02427 * 19 10 9 35 35 H 1.09005 * 117.49357 * 214.97813 * 20 10 9 36 36 H 1.08997 * 117.50125 * 359.96758 * 20 10 9 37 37 H 1.08000 * 120.00177 * 359.97438 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 1.7053 -0.2332 2.4861 7 6 2.1627 -0.8870 3.6147 8 6 2.9541 -2.0135 3.4878 9 6 3.2854 -2.4876 2.2326 10 6 4.1486 -3.7152 2.0942 11 6 3.4773 -4.9157 1.4785 12 1 3.5767 -5.1062 0.4201 13 6 2.7363 -5.7709 2.2663 14 7 2.5249 -5.4820 3.5317 15 14 2.0327 -7.3397 1.5362 16 1 2.4110 -7.4319 0.1032 17 1 2.5753 -8.5127 2.2675 18 1 0.5528 -7.3219 1.6577 19 6 5.1929 -3.9706 3.1827 20 6 5.6337 -3.5042 1.7930 21 6 2.8246 -1.8358 1.1036 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 2.9660 -0.6354 -1.2788 29 1 1.0902 0.6490 2.5852 30 1 1.9043 -0.5163 4.5956 31 1 3.3139 -2.5229 4.3696 32 1 2.0663 -6.1168 4.1041 33 1 5.2561 -3.2506 3.9986 34 1 5.3949 -5.0071 3.4531 35 1 6.1253 -4.2341 1.1497 36 1 5.9864 -2.4776 1.6944 37 1 3.0834 -2.2063 0.1228 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260474178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:21 Heat of formation + Delta-G solvation = -29.720888 kcal Electronic energy + Delta-G solvation = -18035.677376 eV Core-core repulsion = 15356.415962 eV Total energy + Delta-G solvation = -2679.261414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80397 -38.82476 -37.13214 -34.03677 -33.52821 -31.41743 -30.23537 -28.17012 -27.67190 -24.34547 -23.64183 -22.66770 -21.76147 -20.33547 -18.66489 -17.72703 -16.94248 -16.58668 -16.04049 -15.81925 -15.62621 -15.00873 -14.82495 -14.48923 -13.88827 -13.64290 -13.24991 -13.10910 -13.10539 -12.93156 -12.83544 -12.69528 -12.52680 -12.27744 -12.12362 -12.00276 -11.66763 -11.39354 -11.06912 -10.87992 -10.45329 -10.06860 -9.45806 -9.15035 -8.10958 -6.23875 0.68765 0.77582 1.36572 1.39677 1.49754 2.40367 3.04370 3.19622 3.37871 3.52077 3.79048 4.01995 4.19445 4.26707 4.32760 4.45968 4.59863 4.63153 4.70800 4.78856 4.81666 4.90553 4.95015 4.97943 5.08080 5.14225 5.22908 5.31620 5.33848 5.40725 5.54355 5.61276 5.70887 5.77143 5.94597 6.14583 6.39701 6.41208 6.80904 6.85341 7.43575 8.95282 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.007695 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.369392 B = 3637.810324 C = 3989.060969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.168 3.832 3 C -0.164 4.164 4 O -0.573 6.573 5 C -0.119 4.119 6 C -0.132 4.132 7 C -0.128 4.128 8 C -0.128 4.128 9 C -0.021 4.021 10 C 0.046 3.954 11 C -0.507 4.507 12 H 0.050 0.950 13 C 0.029 3.971 14 N -0.894 5.894 15 Si 0.944 3.056 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.285 1.285 19 C -0.159 4.159 20 C -0.182 4.182 21 C -0.121 4.121 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.385 0.615 29 H 0.146 0.854 30 H 0.136 0.864 31 H 0.099 0.901 32 H 0.258 0.742 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 13.188 -3.462 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.128 3.872 3 C -0.221 4.221 4 O -0.381 6.381 5 C -0.120 4.120 6 C -0.150 4.150 7 C -0.146 4.146 8 C -0.146 4.146 9 C -0.021 4.021 10 C 0.046 3.954 11 C -0.544 4.544 12 H 0.068 0.932 13 C -0.172 4.172 14 N -0.531 5.531 15 Si 0.770 3.230 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.211 1.211 19 C -0.196 4.196 20 C -0.219 4.219 21 C -0.139 4.139 22 H 0.107 0.893 23 H 0.095 0.905 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.235 0.765 29 H 0.164 0.836 30 H 0.154 0.846 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.020 13.030 -3.392 13.615 hybrid contribution 0.349 -1.483 0.171 1.533 sum -1.671 11.547 -3.221 12.103 Atomic orbital electron populations 1.21795 0.91746 1.01964 1.03604 1.20103 0.94971 0.90983 0.81176 1.22424 1.01721 0.94122 1.03851 1.86511 1.28381 1.78650 1.44517 1.20647 0.98509 0.96465 0.96360 1.20975 1.01788 1.01168 0.91075 1.21293 0.98132 0.95609 0.99558 1.21041 0.99977 0.96648 0.96917 1.19729 0.96507 0.92930 0.92945 1.17757 0.86250 0.91984 0.99401 1.20680 1.31364 1.08064 0.94340 0.93165 1.25613 0.95497 1.00566 0.95546 1.70128 1.41685 1.35250 1.06069 0.85720 0.77924 0.80370 0.78973 1.19313 1.20221 1.21146 1.22447 1.06803 0.99125 0.91262 1.23025 0.99330 1.00387 0.99146 1.20731 0.99343 0.95770 0.98044 0.89300 0.90480 0.94258 0.92180 0.90470 0.90093 0.76546 0.83647 0.84599 0.88305 0.93247 0.90835 0.92132 0.90009 0.89468 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.66 71.98 0.62 -2.73 16 2 C 0.17 4.57 1.24 -11.54 -0.01 4.56 16 3 C -0.16 -3.26 8.58 71.98 0.62 -2.65 16 4 O -0.57 -17.08 11.83 -148.98 -1.76 -18.84 16 5 C -0.12 -4.05 4.78 -19.87 -0.09 -4.14 16 6 C -0.13 -4.13 8.71 22.27 0.19 -3.94 16 7 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 8 C -0.13 -5.57 9.23 22.27 0.21 -5.37 16 9 C -0.02 -0.96 5.11 -19.86 -0.10 -1.06 16 10 C 0.05 2.32 1.51 -53.68 -0.08 2.24 16 11 C -0.51 -28.28 8.75 25.60 0.22 -28.06 16 12 H 0.05 2.83 7.82 -2.91 -0.02 2.80 16 13 C 0.03 1.63 5.39 84.66 0.46 2.08 16 14 N -0.89 -51.38 12.91 21.45 0.28 -51.10 16 15 Si 0.94 44.41 29.54 68.60 2.03 46.43 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 19 C -0.16 -7.56 8.93 30.62 0.27 -7.29 16 20 C -0.18 -7.89 9.94 30.62 0.30 -7.58 16 21 C -0.12 -5.03 8.88 22.27 0.20 -4.83 16 22 H 0.09 1.83 7.41 -2.39 -0.02 1.81 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.39 7.37 -2.39 -0.02 1.37 16 28 H 0.39 9.37 8.38 -74.06 -0.62 8.75 16 29 H 0.15 3.38 7.10 -2.91 -0.02 3.36 16 30 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.10 4.59 7.03 -2.91 -0.02 4.57 16 32 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 33 H 0.07 3.30 7.14 -2.39 -0.02 3.28 16 34 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.08 3.46 8.14 -2.38 -0.02 3.44 16 36 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.11 4.65 6.73 -2.91 -0.02 4.63 16 Total: -1.00 -63.81 307.70 4.00 -59.80 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.43 Total: 26.78 kcal Atomic # 6 Polarization: -66.10 SS G_CDS: 3.03 Total: -63.07 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.28 Total: -51.10 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.76 Total: -18.84 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -63.81 4.00 -59.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260474178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.081 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds