Wall clock time and date at job start Mon Mar 30 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42890 * 109.47270 * 2 1 4 4 C 1.50701 * 109.47035 * 239.99843 * 2 1 3 5 5 C 1.38654 * 119.87944 * 293.89563 * 4 2 1 6 6 C 1.38613 * 120.50655 * 180.02562 * 5 4 2 7 7 C 1.37633 * 120.24298 * 359.97438 * 6 5 4 8 8 C 1.40702 * 119.75067 * 0.02562 * 7 6 5 9 9 C 1.41391 * 120.24623 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99930 * 204.54259 * 9 8 7 11 11 C 1.39945 * 120.00418 * 24.54887 * 9 8 7 12 12 N 1.30831 * 119.99579 * 16.37463 * 11 9 8 13 13 Si 1.86793 * 120.00006 * 196.37979 * 11 9 8 14 14 H 1.48493 * 109.47456 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47279 * 119.99966 * 13 11 9 16 16 H 1.48507 * 109.46919 * 239.99593 * 13 11 9 17 17 C 1.37596 * 119.87375 * 113.91556 * 4 2 1 18 18 C 1.52996 * 109.47115 * 120.00335 * 2 1 3 19 19 C 1.53788 * 113.61225 * 280.92516 * 18 2 1 20 20 C 1.53958 * 87.01847 * 220.04801 * 19 18 2 21 21 C 1.53780 * 87.11260 * 25.36068 * 20 19 18 22 22 H 1.08998 * 109.46792 * 184.83796 * 1 2 3 23 23 H 1.09001 * 109.46933 * 304.83596 * 1 2 3 24 24 H 1.08996 * 109.46703 * 64.84088 * 1 2 3 25 25 H 0.96700 * 114.00424 * 180.02562 * 3 2 1 26 26 H 1.08007 * 119.74535 * 0.02562 * 5 4 2 27 27 H 1.07999 * 119.87819 * 179.97438 * 6 5 4 28 28 H 1.08001 * 120.12796 * 180.02562 * 7 6 5 29 29 H 0.97002 * 119.99479 * 180.02562 * 12 11 9 30 30 H 1.08001 * 120.13045 * 0.25484 * 17 4 2 31 31 H 1.09007 * 112.85360 * 52.12048 * 18 2 1 32 32 H 1.08996 * 113.61176 * 334.56972 * 19 18 2 33 33 H 1.09008 * 113.61323 * 105.47269 * 19 18 2 34 34 H 1.09002 * 113.53448 * 270.81370 * 20 19 18 35 35 H 1.08998 * 113.66263 * 139.93470 * 20 19 18 36 36 H 1.08994 * 113.61588 * 220.09017 * 21 20 19 37 37 H 1.09004 * 113.68912 * 89.19673 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.8035 -2.0692 -1.3854 6 6 2.2601 -2.7357 -2.5117 7 6 2.9467 -2.0535 -3.4902 8 6 3.1849 -0.6746 -3.3438 9 6 3.8886 0.0367 -4.3428 10 1 4.4121 0.9470 -4.0902 11 6 3.9066 -0.4386 -5.6589 12 7 3.0354 -1.3362 -6.0422 13 14 5.1747 0.2083 -6.8683 14 1 6.0383 1.2093 -6.1919 15 1 6.0108 -0.9170 -7.3582 16 1 4.4828 0.8473 -8.0165 17 6 2.7169 -0.0084 -2.1958 18 6 2.0401 -0.7213 1.2492 19 6 1.9936 0.1420 2.5211 20 6 3.3555 -0.4731 2.8914 21 6 3.5716 -0.7067 1.3869 22 1 -0.3633 -1.0240 0.0867 23 1 -0.3633 0.5870 0.8435 24 1 -0.3632 0.4369 -0.9302 25 1 2.9704 1.4236 -0.0004 26 1 1.2652 -2.6123 -0.6226 27 1 2.0765 -3.7943 -2.6218 28 1 3.3013 -2.5746 -4.3672 29 1 3.0482 -1.6660 -6.9543 30 1 2.8980 1.0490 -2.0711 31 1 1.5997 -1.7103 1.3764 32 1 2.0374 1.2130 2.3236 33 1 1.1897 -0.1310 3.2049 34 1 3.2746 -1.3940 3.4690 35 1 4.0541 0.2411 3.3273 36 1 4.0399 -1.6635 1.1564 37 1 4.0478 0.1312 0.8776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260502648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:46 Heat of formation + Delta-G solvation = -26.116264 kcal Electronic energy + Delta-G solvation = -18037.375136 eV Core-core repulsion = 15358.270031 eV Total energy + Delta-G solvation = -2679.105106 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.78124 -37.24767 -35.44492 -33.61652 -31.37091 -29.70646 -28.37512 -25.61459 -25.10002 -25.04891 -21.99828 -20.66019 -19.77850 -18.83132 -17.43731 -16.48177 -15.58169 -15.21740 -14.67943 -14.27811 -13.87808 -13.16628 -13.02670 -12.83493 -12.42502 -12.18044 -11.94774 -11.80701 -11.70162 -11.52733 -11.21738 -11.02001 -10.94398 -10.64859 -10.48158 -10.33323 -10.22635 -10.05194 -9.66534 -9.35792 -9.14474 -9.00219 -7.44275 -7.23516 -6.72280 -4.33675 2.78968 2.99650 3.08400 3.13714 3.22571 3.94981 4.61829 4.72470 4.87200 4.95101 4.98200 5.12500 5.56355 5.61637 5.76155 5.84748 5.90770 6.00890 6.03294 6.07668 6.24904 6.26977 6.28918 6.43321 6.49758 6.52333 6.61973 6.80658 6.99089 7.08544 7.28148 7.38586 7.59821 7.89377 8.05444 8.08127 8.23409 8.33634 8.66902 8.92550 9.00383 10.22102 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033455 B = 0.006033 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.733449 B = 4640.080394 C = 4825.966834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.185 3.815 3 O -0.556 6.556 4 C -0.086 4.086 5 C -0.228 4.228 6 C -0.108 4.108 7 C -0.164 4.164 8 C 0.108 3.892 9 C -0.463 4.463 10 H 0.076 0.924 11 C 0.075 3.925 12 N -0.797 5.797 13 Si 0.907 3.093 14 H -0.261 1.261 15 H -0.273 1.273 16 H -0.275 1.275 17 C -0.211 4.211 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.144 4.144 21 C -0.130 4.130 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.371 0.629 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.279 0.721 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 0.521 10.272 10.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.145 3.855 3 O -0.363 6.363 4 C -0.087 4.087 5 C -0.247 4.247 6 C -0.126 4.126 7 C -0.184 4.184 8 C 0.106 3.894 9 C -0.493 4.493 10 H 0.094 0.906 11 C -0.142 4.142 12 N -0.423 5.423 13 Si 0.731 3.269 14 H -0.184 1.184 15 H -0.198 1.198 16 H -0.200 1.200 17 C -0.230 4.230 18 C -0.143 4.143 19 C -0.172 4.172 20 C -0.182 4.182 21 C -0.168 4.168 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.219 0.781 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.929 0.526 10.056 10.113 hybrid contribution 1.057 -0.072 -0.787 1.320 sum 0.128 0.455 9.269 9.281 Atomic orbital electron populations 1.21635 0.93058 1.01642 1.01993 1.19745 0.93637 0.80904 0.91247 1.86445 1.26495 1.26556 1.96804 1.19708 0.99709 0.93973 0.95261 1.20063 1.11001 0.93901 0.99745 1.20654 0.99663 0.97446 0.94855 1.21371 1.03414 0.94532 0.99056 1.17603 0.89055 0.91613 0.91152 1.19587 1.28510 1.08729 0.92449 0.90560 1.25893 0.94891 0.93980 0.99431 1.69837 1.29232 1.24513 1.18727 0.86291 0.81085 0.79628 0.79878 1.18448 1.19784 1.20040 1.20790 1.06627 0.97978 0.97627 1.23153 0.96675 0.99589 0.94841 1.22968 0.96790 1.00548 0.96871 1.22851 0.97837 1.00575 0.96891 1.22809 0.96367 1.02216 0.95378 0.91606 0.92791 0.92058 0.78079 0.89830 0.89636 0.86457 0.91060 0.88491 0.89055 0.89290 0.92282 0.90765 0.91940 0.91455 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.62 37.16 0.32 -1.77 16 2 C 0.19 3.25 0.80 -91.77 -0.07 3.18 16 3 O -0.56 -9.77 10.52 -35.23 -0.37 -10.14 16 4 C -0.09 -1.84 4.34 -104.70 -0.45 -2.30 16 5 C -0.23 -4.96 8.89 -39.29 -0.35 -5.31 16 6 C -0.11 -2.53 10.02 -39.66 -0.40 -2.93 16 7 C -0.16 -4.30 8.70 -38.87 -0.34 -4.63 16 8 C 0.11 2.88 5.58 -106.82 -0.60 2.28 16 9 C -0.46 -12.36 9.06 -37.74 -0.34 -12.70 16 10 H 0.08 1.97 7.90 -52.48 -0.41 1.55 16 11 C 0.07 1.90 5.17 -17.34 -0.09 1.81 16 12 N -0.80 -20.89 10.88 55.55 0.60 -20.29 16 13 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 14 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 17 C -0.21 -5.09 8.95 -38.87 -0.35 -5.44 16 18 C -0.12 -1.85 2.57 -89.80 -0.23 -2.08 16 19 C -0.13 -1.72 7.47 -25.82 -0.19 -1.91 16 20 C -0.14 -1.72 8.09 -25.83 -0.21 -1.93 16 21 C -0.13 -1.87 7.08 -25.92 -0.18 -2.06 16 22 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.37 5.84 6.61 45.56 0.30 6.14 16 26 H 0.08 1.63 7.38 -52.48 -0.39 1.24 16 27 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.12 3.18 6.11 -52.49 -0.32 2.86 16 29 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 30 H 0.10 2.27 6.75 -52.49 -0.35 1.91 16 31 H 0.09 1.37 7.56 -51.92 -0.39 0.97 16 32 H 0.09 1.18 7.08 -51.93 -0.37 0.82 16 33 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.13 6.51 -51.93 -0.34 0.79 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -27.54 296.71 -8.59 -36.13 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -4.78 Total: 11.78 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: -3.48 Total: -35.78 kcal Atomic # 7 Polarization: -20.89 SS G_CDS: 0.60 Total: -20.29 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.37 Total: -10.14 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.54 -8.59 -36.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.018 kcal (2) G-P(sol) polarization free energy of solvation -27.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds