Wall clock time and date at job start Mon Mar 30 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42890 * 109.47270 * 2 1 4 4 C 1.50701 * 109.47035 * 239.99843 * 2 1 3 5 5 C 1.38654 * 119.87944 * 293.89563 * 4 2 1 6 6 C 1.38613 * 120.50655 * 180.02562 * 5 4 2 7 7 C 1.37633 * 120.24298 * 359.97438 * 6 5 4 8 8 C 1.40702 * 119.75067 * 0.02562 * 7 6 5 9 9 C 1.41391 * 120.24623 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99930 * 204.54259 * 9 8 7 11 11 C 1.39945 * 120.00418 * 24.54887 * 9 8 7 12 12 N 1.30831 * 119.99579 * 16.37463 * 11 9 8 13 13 Si 1.86793 * 120.00006 * 196.37979 * 11 9 8 14 14 H 1.48493 * 109.47456 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47279 * 119.99966 * 13 11 9 16 16 H 1.48507 * 109.46919 * 239.99593 * 13 11 9 17 17 C 1.37596 * 119.87375 * 113.91556 * 4 2 1 18 18 C 1.52996 * 109.47115 * 120.00335 * 2 1 3 19 19 C 1.53788 * 113.61225 * 280.92516 * 18 2 1 20 20 C 1.53958 * 87.01847 * 220.04801 * 19 18 2 21 21 C 1.53780 * 87.11260 * 25.36068 * 20 19 18 22 22 H 1.08998 * 109.46792 * 184.83796 * 1 2 3 23 23 H 1.09001 * 109.46933 * 304.83596 * 1 2 3 24 24 H 1.08996 * 109.46703 * 64.84088 * 1 2 3 25 25 H 0.96700 * 114.00424 * 180.02562 * 3 2 1 26 26 H 1.08007 * 119.74535 * 0.02562 * 5 4 2 27 27 H 1.07999 * 119.87819 * 179.97438 * 6 5 4 28 28 H 1.08001 * 120.12796 * 180.02562 * 7 6 5 29 29 H 0.97002 * 119.99479 * 180.02562 * 12 11 9 30 30 H 1.08001 * 120.13045 * 0.25484 * 17 4 2 31 31 H 1.09007 * 112.85360 * 52.12048 * 18 2 1 32 32 H 1.08996 * 113.61176 * 334.56972 * 19 18 2 33 33 H 1.09008 * 113.61323 * 105.47269 * 19 18 2 34 34 H 1.09002 * 113.53448 * 270.81370 * 20 19 18 35 35 H 1.08998 * 113.66263 * 139.93470 * 20 19 18 36 36 H 1.08994 * 113.61588 * 220.09017 * 21 20 19 37 37 H 1.09004 * 113.68912 * 89.19673 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.8035 -2.0692 -1.3854 6 6 2.2601 -2.7357 -2.5117 7 6 2.9467 -2.0535 -3.4902 8 6 3.1849 -0.6746 -3.3438 9 6 3.8886 0.0367 -4.3428 10 1 4.4121 0.9470 -4.0902 11 6 3.9066 -0.4386 -5.6589 12 7 3.0354 -1.3362 -6.0422 13 14 5.1747 0.2083 -6.8683 14 1 6.0383 1.2093 -6.1919 15 1 6.0108 -0.9170 -7.3582 16 1 4.4828 0.8473 -8.0165 17 6 2.7169 -0.0084 -2.1958 18 6 2.0401 -0.7213 1.2492 19 6 1.9936 0.1420 2.5211 20 6 3.3555 -0.4731 2.8914 21 6 3.5716 -0.7067 1.3869 22 1 -0.3633 -1.0240 0.0867 23 1 -0.3633 0.5870 0.8435 24 1 -0.3632 0.4369 -0.9302 25 1 2.9704 1.4236 -0.0004 26 1 1.2652 -2.6123 -0.6226 27 1 2.0765 -3.7943 -2.6218 28 1 3.3013 -2.5746 -4.3672 29 1 3.0482 -1.6660 -6.9543 30 1 2.8980 1.0490 -2.0711 31 1 1.5997 -1.7103 1.3764 32 1 2.0374 1.2130 2.3236 33 1 1.1897 -0.1310 3.2049 34 1 3.2746 -1.3940 3.4690 35 1 4.0541 0.2411 3.3273 36 1 4.0399 -1.6635 1.1564 37 1 4.0478 0.1312 0.8776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260502648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:46 Heat of formation + Delta-G solvation = -40.606728 kcal Electronic energy + Delta-G solvation = -18038.003490 eV Core-core repulsion = 15358.270031 eV Total energy + Delta-G solvation = -2679.733459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.12346 -38.91202 -36.82403 -35.46564 -32.91260 -31.59409 -30.05455 -27.18957 -26.57066 -26.18240 -23.56064 -22.50076 -21.33842 -20.03114 -19.18954 -17.87860 -17.35005 -16.64131 -16.18401 -15.95168 -15.38881 -14.86787 -14.61641 -14.26870 -13.96212 -13.47937 -13.34200 -13.27280 -13.03161 -12.92063 -12.84192 -12.78213 -12.43614 -12.26178 -12.13343 -11.80844 -11.53327 -11.30136 -11.20106 -11.04839 -10.89748 -10.46626 -9.35866 -9.08691 -8.61860 -6.34120 0.99287 1.11728 1.36431 1.50221 1.52016 2.20272 2.73698 3.40782 3.69714 3.72231 3.85008 3.87635 4.02043 4.31530 4.40699 4.48401 4.58273 4.75308 4.84596 4.89031 4.95776 4.99256 5.02194 5.10222 5.14137 5.14892 5.17493 5.27824 5.37447 5.44966 5.52881 5.69954 5.72290 6.05407 6.12330 6.20687 6.39654 6.72666 6.85420 6.96464 7.06878 8.34889 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033455 B = 0.006033 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.733449 B = 4640.080394 C = 4825.966834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.185 3.815 3 O -0.563 6.563 4 C -0.077 4.077 5 C -0.222 4.222 6 C -0.112 4.112 7 C -0.194 4.194 8 C 0.077 3.923 9 C -0.502 4.502 10 H 0.072 0.928 11 C 0.033 3.967 12 N -0.831 5.831 13 Si 0.981 3.019 14 H -0.258 1.258 15 H -0.264 1.264 16 H -0.266 1.266 17 C -0.227 4.227 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.130 4.130 21 C -0.141 4.141 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.377 0.623 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.286 0.714 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 0.507 12.072 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.144 3.856 3 O -0.370 6.370 4 C -0.078 4.078 5 C -0.241 4.241 6 C -0.131 4.131 7 C -0.214 4.214 8 C 0.075 3.925 9 C -0.531 4.531 10 H 0.090 0.910 11 C -0.181 4.181 12 N -0.457 5.457 13 Si 0.802 3.198 14 H -0.182 1.182 15 H -0.188 1.188 16 H -0.191 1.191 17 C -0.246 4.246 18 C -0.144 4.144 19 C -0.162 4.162 20 C -0.167 4.167 21 C -0.178 4.178 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.058 0.942 25 H 0.226 0.774 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.200 0.510 11.873 11.945 hybrid contribution 1.067 -0.093 -1.250 1.646 sum -0.133 0.417 10.624 10.633 Atomic orbital electron populations 1.21666 0.92026 1.02806 1.01849 1.19850 0.94352 0.80776 0.90580 1.86433 1.27192 1.26672 1.96750 1.20165 0.97567 0.94126 0.95918 1.20429 1.09928 0.94152 0.99577 1.20959 0.98780 0.98641 0.94696 1.21314 1.05676 0.94700 0.99691 1.17967 0.89961 0.92257 0.92339 1.19828 1.30129 1.09415 0.93769 0.91006 1.26748 0.96473 0.94038 1.00817 1.69896 1.30594 1.25652 1.19606 0.85175 0.78228 0.79134 0.77252 1.18203 1.18830 1.19130 1.20919 1.07573 0.98181 0.97968 1.23162 0.96789 1.00032 0.94396 1.22905 0.97873 0.99813 0.95618 1.22803 0.97440 1.01422 0.95031 1.22867 0.95939 1.01348 0.97678 0.90228 0.90571 0.94187 0.77396 0.86655 0.87479 0.88396 0.90341 0.88631 0.88423 0.89803 0.90512 0.89352 0.90712 0.92633 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 8.62 71.98 0.62 -3.26 16 2 C 0.18 6.17 0.80 -11.54 -0.01 6.16 16 3 O -0.56 -19.14 10.52 -148.98 -1.57 -20.71 16 4 C -0.08 -3.27 4.34 -19.92 -0.09 -3.35 16 5 C -0.22 -9.35 8.89 22.46 0.20 -9.15 16 6 C -0.11 -5.27 10.02 22.22 0.22 -5.05 16 7 C -0.19 -10.51 8.70 22.73 0.20 -10.32 16 8 C 0.08 4.26 5.58 -21.29 -0.12 4.14 16 9 C -0.50 -27.95 9.06 23.46 0.21 -27.73 16 10 H 0.07 3.88 7.90 -2.91 -0.02 3.86 16 11 C 0.03 1.72 5.17 85.26 0.44 2.16 16 12 N -0.83 -44.98 10.88 21.83 0.24 -44.74 16 13 Si 0.98 39.42 29.59 68.60 2.03 41.45 16 14 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 16 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 17 C -0.23 -11.23 8.95 22.73 0.20 -11.03 16 18 C -0.13 -3.40 2.57 -10.27 -0.03 -3.42 16 19 C -0.12 -2.75 7.47 31.18 0.23 -2.52 16 20 C -0.13 -2.67 8.09 31.18 0.25 -2.41 16 21 C -0.14 -3.79 7.08 31.12 0.22 -3.57 16 22 H 0.08 2.20 7.94 -2.39 -0.02 2.18 16 23 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.38 11.69 6.61 -74.06 -0.49 11.20 16 26 H 0.12 4.12 7.38 -2.91 -0.02 4.10 16 27 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 28 H 0.10 5.59 6.11 -2.91 -0.02 5.57 16 29 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 30 H 0.10 4.62 6.75 -2.91 -0.02 4.60 16 31 H 0.10 2.56 7.56 -2.38 -0.02 2.54 16 32 H 0.08 1.97 7.08 -2.39 -0.02 1.95 16 33 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.97 6.51 -2.38 -0.02 1.95 16 Total: -1.00 -60.72 296.71 3.83 -56.89 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.57 Total: 36.46 kcal Atomic # 6 Polarization: -71.91 SS G_CDS: 2.56 Total: -69.35 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.24 Total: -44.74 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.57 Total: -20.71 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -60.72 3.83 -56.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.284 kcal (2) G-P(sol) polarization free energy of solvation -60.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds