Wall clock time and date at job start Mon Mar 30 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47175 * 2 1 4 4 C 1.50707 * 109.47225 * 240.00275 * 2 1 3 5 5 C 1.37635 * 120.12473 * 126.41428 * 4 2 1 6 6 C 1.38617 * 120.24154 * 179.75172 * 5 4 2 7 7 C 1.38650 * 120.50514 * 0.25278 * 6 5 4 8 8 C 1.37604 * 120.24883 * 0.02562 * 7 6 5 9 9 C 1.40694 * 120.12584 * 306.69010 * 4 2 1 10 10 C 1.41399 * 120.24740 * 359.97438 * 9 4 2 11 11 H 1.08001 * 120.00066 * 315.50837 * 10 9 4 12 12 C 1.39946 * 120.00080 * 135.50048 * 10 9 4 13 13 N 1.30821 * 119.99967 * 351.67564 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 171.67328 * 12 10 9 15 15 H 1.48498 * 109.47275 * 90.00108 * 14 12 10 16 16 H 1.48503 * 109.46962 * 210.00396 * 14 12 10 17 17 H 1.48508 * 109.47022 * 329.99839 * 14 12 10 18 18 C 1.53000 * 109.47654 * 120.00162 * 2 1 3 19 19 C 1.53777 * 113.61723 * 271.73711 * 18 2 1 20 20 C 1.53955 * 87.02137 * 220.04509 * 19 18 2 21 21 C 1.53780 * 87.11155 * 25.35948 * 20 19 18 22 22 H 1.09004 * 109.46816 * 188.79729 * 1 2 3 23 23 H 1.09001 * 109.47076 * 308.79079 * 1 2 3 24 24 H 1.08993 * 109.47621 * 68.79489 * 1 2 3 25 25 H 0.96702 * 113.99871 * 179.97438 * 3 2 1 26 26 H 1.07998 * 119.88366 * 0.02622 * 5 4 2 27 27 H 1.08006 * 119.74516 * 180.23367 * 6 5 4 28 28 H 1.08004 * 119.87671 * 180.02562 * 7 6 5 29 29 H 1.07997 * 120.12555 * 180.02562 * 8 7 6 30 30 H 0.97000 * 120.00043 * 179.97438 * 13 12 10 31 31 H 1.09002 * 112.84416 * 42.92822 * 18 2 1 32 32 H 1.09006 * 113.61177 * 334.56416 * 19 18 2 33 33 H 1.08999 * 113.61909 * 105.46486 * 19 18 2 34 34 H 1.09004 * 113.53393 * 270.81268 * 20 19 18 35 35 H 1.09000 * 113.66835 * 139.92743 * 20 19 18 36 36 H 1.09001 * 113.62141 * 220.09234 * 21 20 19 37 37 H 1.09002 * 113.69425 * 89.19886 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.9289 -0.0885 -2.0695 6 6 3.3965 -0.7416 -3.1992 7 6 2.9641 -2.0241 -3.5004 8 6 2.0638 -2.6629 -2.6789 9 6 1.5822 -2.0095 -1.5292 10 6 0.6573 -2.6562 -0.6774 11 1 0.7923 -2.6196 0.3935 12 6 -0.4333 -3.3437 -1.2220 13 7 -0.6904 -3.2537 -2.5015 14 14 -1.5218 -4.3897 -0.1218 15 1 -2.6303 -3.5584 0.4124 16 1 -2.0833 -5.5170 -0.9088 17 1 -0.7171 -4.9255 1.0055 18 6 2.0401 -0.7213 1.2492 19 6 2.2052 0.2008 2.4687 20 6 3.5018 -0.5705 2.7754 21 6 3.5669 -0.9030 1.2754 22 1 -0.3633 -1.0156 0.1572 23 1 -0.3633 0.6438 0.8010 24 1 -0.3634 0.3717 -0.9580 25 1 2.9703 1.4236 0.0004 26 1 3.2727 0.9102 -1.8445 27 1 4.1028 -0.2475 -3.8500 28 1 3.3354 -2.5237 -4.3830 29 1 1.7286 -3.6620 -2.9151 30 1 -1.4460 -3.7305 -2.8791 31 1 1.4878 -1.6359 1.4650 32 1 2.3705 1.2459 2.2067 33 1 1.4295 0.0702 3.2232 34 1 3.3492 -1.4436 3.4099 35 1 4.3186 0.0651 3.1176 36 1 3.8888 -1.9234 1.0678 37 1 4.1050 -0.1611 0.6853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:50 Heat of formation + Delta-G solvation = -17.374167 kcal Electronic energy + Delta-G solvation = -18757.243850 eV Core-core repulsion = 16078.517830 eV Total energy + Delta-G solvation = -2678.726020 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.67611 -37.19135 -35.19571 -33.59669 -31.41441 -29.38416 -28.31732 -25.54016 -25.05211 -24.81594 -21.57123 -20.91352 -19.49692 -18.70636 -17.34583 -16.47978 -15.52244 -15.19604 -14.68238 -13.99968 -13.78226 -13.10455 -12.79963 -12.52165 -12.42919 -11.99894 -11.75646 -11.63427 -11.56366 -11.26276 -11.05641 -10.94363 -10.86681 -10.67023 -10.46960 -10.22309 -9.93622 -9.69602 -9.50265 -9.36421 -9.06237 -8.79364 -7.39996 -7.12834 -6.63000 -4.34621 2.79192 2.90859 3.10787 3.13903 3.17517 4.00183 4.71611 4.99165 5.13063 5.20417 5.22665 5.41207 5.51350 5.93374 6.06543 6.07903 6.16334 6.20582 6.25681 6.30320 6.35396 6.39258 6.52730 6.56560 6.75199 6.87227 6.94336 6.99013 7.10612 7.19607 7.34227 7.43061 7.57810 7.80395 7.94173 8.05529 8.22318 8.41770 8.59650 8.91641 8.96184 10.38071 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.011409 C = 0.008360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.543385 B = 2453.720662 C = 3348.327237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.206 3.794 3 O -0.563 6.563 4 C -0.187 4.187 5 C -0.099 4.099 6 C -0.220 4.220 7 C -0.115 4.115 8 C -0.144 4.144 9 C 0.134 3.866 10 C -0.483 4.483 11 H 0.084 0.916 12 C 0.078 3.922 13 N -0.815 5.815 14 Si 0.895 3.105 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.263 1.263 18 C -0.125 4.125 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.129 4.129 22 H 0.102 0.898 23 H 0.036 0.964 24 H 0.049 0.951 25 H 0.361 0.639 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.276 0.724 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 2.660 6.026 7.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.166 3.834 3 O -0.369 6.369 4 C -0.188 4.188 5 C -0.117 4.117 6 C -0.239 4.239 7 C -0.133 4.133 8 C -0.163 4.163 9 C 0.132 3.868 10 C -0.515 4.515 11 H 0.102 0.898 12 C -0.136 4.136 13 N -0.442 5.442 14 Si 0.720 3.280 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.143 4.143 19 C -0.174 4.174 20 C -0.183 4.183 21 C -0.167 4.167 22 H 0.120 0.880 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.208 0.792 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.186 2.700 5.848 7.186 hybrid contribution 0.000 -0.720 0.143 0.734 sum 3.185 1.981 5.991 7.068 Atomic orbital electron populations 1.21838 0.92585 1.04086 1.00413 1.19466 0.94094 0.79177 0.90684 1.86506 1.25440 1.28087 1.96902 1.20349 1.03915 0.95547 0.99037 1.20359 0.98108 0.97764 0.95462 1.20430 1.06487 0.96884 1.00078 1.20719 0.98923 0.95243 0.98437 1.21213 0.97847 0.99511 0.97726 1.17259 0.89187 0.88967 0.91426 1.19426 1.07546 1.30038 0.94445 0.89814 1.25694 0.98023 0.94878 0.95045 1.69752 1.26320 1.35697 1.12459 0.86519 0.80453 0.80098 0.80889 1.19565 1.20389 1.18703 1.23315 0.96208 0.99840 0.94941 1.22989 0.96971 0.99630 0.97848 1.22861 0.98087 1.00063 0.97245 1.22792 0.97114 1.01634 0.95119 0.88000 0.94540 0.93206 0.79179 0.89000 0.89430 0.89423 0.87897 0.91284 0.87679 0.89593 0.92399 0.90830 0.92341 0.91681 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.29 37.16 0.31 -2.48 16 2 C 0.21 4.11 0.76 -91.77 -0.07 4.04 16 3 O -0.56 -10.50 10.56 -35.23 -0.37 -10.88 16 4 C -0.19 -4.22 4.10 -103.91 -0.43 -4.64 16 5 C -0.10 -2.14 9.23 -39.66 -0.37 -2.50 16 6 C -0.22 -4.79 10.05 -39.29 -0.39 -5.18 16 7 C -0.11 -2.63 10.02 -39.66 -0.40 -3.02 16 8 C -0.14 -3.59 8.65 -38.87 -0.34 -3.93 16 9 C 0.13 3.31 5.16 -106.83 -0.55 2.76 16 10 C -0.48 -11.77 5.39 -37.74 -0.20 -11.98 16 11 H 0.08 1.95 4.65 -52.49 -0.24 1.71 16 12 C 0.08 1.91 5.24 -17.34 -0.09 1.82 16 13 N -0.81 -21.00 11.91 55.55 0.66 -20.33 16 14 Si 0.90 18.44 29.57 -169.99 -5.03 13.42 16 15 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 18 C -0.12 -2.22 2.59 -89.81 -0.23 -2.46 16 19 C -0.14 -2.07 7.48 -25.83 -0.19 -2.27 16 20 C -0.15 -2.01 8.09 -25.83 -0.21 -2.22 16 21 C -0.13 -2.10 6.79 -25.92 -0.18 -2.28 16 22 H 0.10 2.25 5.06 -51.93 -0.26 1.98 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 1.12 8.12 -51.93 -0.42 0.70 16 25 H 0.36 5.73 6.56 45.56 0.30 6.03 16 26 H 0.09 1.77 6.44 -52.49 -0.34 1.43 16 27 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 28 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 29 H 0.10 2.66 7.40 -52.49 -0.39 2.27 16 30 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 31 H 0.11 2.02 5.51 -51.93 -0.29 1.74 16 32 H 0.09 1.29 6.82 -51.93 -0.35 0.94 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.14 7.03 -51.93 -0.36 0.78 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -26.25 287.90 -8.19 -34.44 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -4.45 Total: 13.37 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: -3.34 Total: -34.35 kcal Atomic # 7 Polarization: -21.00 SS G_CDS: 0.66 Total: -20.33 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.37 Total: -10.88 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.25 -8.19 -34.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.064 kcal (2) G-P(sol) polarization free energy of solvation -26.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds