Wall clock time and date at job start Mon Mar 30 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47175 * 2 1 4 4 C 1.50707 * 109.47225 * 240.00275 * 2 1 3 5 5 C 1.37635 * 120.12473 * 126.41428 * 4 2 1 6 6 C 1.38617 * 120.24154 * 179.75172 * 5 4 2 7 7 C 1.38650 * 120.50514 * 0.25278 * 6 5 4 8 8 C 1.37604 * 120.24883 * 0.02562 * 7 6 5 9 9 C 1.40694 * 120.12584 * 306.69010 * 4 2 1 10 10 C 1.41399 * 120.24740 * 359.97438 * 9 4 2 11 11 H 1.08001 * 120.00066 * 315.50837 * 10 9 4 12 12 C 1.39946 * 120.00080 * 135.50048 * 10 9 4 13 13 N 1.30821 * 119.99967 * 351.67564 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 171.67328 * 12 10 9 15 15 H 1.48498 * 109.47275 * 90.00108 * 14 12 10 16 16 H 1.48503 * 109.46962 * 210.00396 * 14 12 10 17 17 H 1.48508 * 109.47022 * 329.99839 * 14 12 10 18 18 C 1.53000 * 109.47654 * 120.00162 * 2 1 3 19 19 C 1.53777 * 113.61723 * 271.73711 * 18 2 1 20 20 C 1.53955 * 87.02137 * 220.04509 * 19 18 2 21 21 C 1.53780 * 87.11155 * 25.35948 * 20 19 18 22 22 H 1.09004 * 109.46816 * 188.79729 * 1 2 3 23 23 H 1.09001 * 109.47076 * 308.79079 * 1 2 3 24 24 H 1.08993 * 109.47621 * 68.79489 * 1 2 3 25 25 H 0.96702 * 113.99871 * 179.97438 * 3 2 1 26 26 H 1.07998 * 119.88366 * 0.02622 * 5 4 2 27 27 H 1.08006 * 119.74516 * 180.23367 * 6 5 4 28 28 H 1.08004 * 119.87671 * 180.02562 * 7 6 5 29 29 H 1.07997 * 120.12555 * 180.02562 * 8 7 6 30 30 H 0.97000 * 120.00043 * 179.97438 * 13 12 10 31 31 H 1.09002 * 112.84416 * 42.92822 * 18 2 1 32 32 H 1.09006 * 113.61177 * 334.56416 * 19 18 2 33 33 H 1.08999 * 113.61909 * 105.46486 * 19 18 2 34 34 H 1.09004 * 113.53393 * 270.81268 * 20 19 18 35 35 H 1.09000 * 113.66835 * 139.92743 * 20 19 18 36 36 H 1.09001 * 113.62141 * 220.09234 * 21 20 19 37 37 H 1.09002 * 113.69425 * 89.19886 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.9289 -0.0885 -2.0695 6 6 3.3965 -0.7416 -3.1992 7 6 2.9641 -2.0241 -3.5004 8 6 2.0638 -2.6629 -2.6789 9 6 1.5822 -2.0095 -1.5292 10 6 0.6573 -2.6562 -0.6774 11 1 0.7923 -2.6196 0.3935 12 6 -0.4333 -3.3437 -1.2220 13 7 -0.6904 -3.2537 -2.5015 14 14 -1.5218 -4.3897 -0.1218 15 1 -2.6303 -3.5584 0.4124 16 1 -2.0833 -5.5170 -0.9088 17 1 -0.7171 -4.9255 1.0055 18 6 2.0401 -0.7213 1.2492 19 6 2.2052 0.2008 2.4687 20 6 3.5018 -0.5705 2.7754 21 6 3.5669 -0.9030 1.2754 22 1 -0.3633 -1.0156 0.1572 23 1 -0.3633 0.6438 0.8010 24 1 -0.3634 0.3717 -0.9580 25 1 2.9703 1.4236 0.0004 26 1 3.2727 0.9102 -1.8445 27 1 4.1028 -0.2475 -3.8500 28 1 3.3354 -2.5237 -4.3830 29 1 1.7286 -3.6620 -2.9151 30 1 -1.4460 -3.7305 -2.8791 31 1 1.4878 -1.6359 1.4650 32 1 2.3705 1.2459 2.2067 33 1 1.4295 0.0702 3.2232 34 1 3.3492 -1.4436 3.4099 35 1 4.3186 0.0651 3.1176 36 1 3.8888 -1.9234 1.0678 37 1 4.1050 -0.1611 0.6853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260518927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:50 Heat of formation + Delta-G solvation = -30.813450 kcal Electronic energy + Delta-G solvation = -18757.826621 eV Core-core repulsion = 16078.517830 eV Total energy + Delta-G solvation = -2679.308791 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17663 -38.80014 -36.66460 -35.40600 -33.08114 -31.18414 -30.03477 -27.29325 -26.45676 -26.13053 -23.19817 -22.72857 -21.07264 -20.09723 -19.10590 -18.00840 -17.15741 -16.74655 -16.16812 -15.69796 -15.39018 -14.78905 -14.36895 -14.23753 -13.95781 -13.44227 -13.32721 -13.22331 -13.05914 -12.95815 -12.62683 -12.60824 -12.46658 -12.22778 -12.09309 -11.66646 -11.39868 -11.29740 -11.08481 -10.91460 -10.77164 -10.34028 -9.19161 -8.94304 -8.46043 -6.22936 1.02313 1.10674 1.41023 1.48781 1.51446 2.27230 2.89250 3.51382 3.69147 3.85769 3.93868 3.97718 4.08803 4.44414 4.47218 4.57038 4.65346 4.72008 4.86519 4.90504 4.99127 5.01780 5.15511 5.17551 5.19271 5.26136 5.32404 5.36860 5.49650 5.51382 5.67135 5.76750 5.81417 6.03830 6.13814 6.24396 6.45205 6.73847 6.97099 7.09590 7.12389 8.56817 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.011409 C = 0.008360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.543385 B = 2453.720662 C = 3348.327237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.210 3.790 3 O -0.564 6.564 4 C -0.189 4.189 5 C -0.107 4.107 6 C -0.218 4.218 7 C -0.125 4.125 8 C -0.172 4.172 9 C 0.106 3.894 10 C -0.493 4.493 11 H 0.089 0.911 12 C 0.037 3.963 13 N -0.856 5.856 14 Si 0.957 3.043 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.256 1.256 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.129 4.129 21 C -0.131 4.131 22 H 0.088 0.912 23 H 0.055 0.945 24 H 0.023 0.977 25 H 0.376 0.624 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.277 0.723 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 3.936 7.586 9.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.170 3.830 3 O -0.371 6.371 4 C -0.190 4.190 5 C -0.125 4.125 6 C -0.237 4.237 7 C -0.143 4.143 8 C -0.191 4.191 9 C 0.104 3.896 10 C -0.524 4.524 11 H 0.107 0.893 12 C -0.174 4.174 13 N -0.485 5.485 14 Si 0.780 3.220 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.180 1.180 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.166 4.166 21 C -0.168 4.168 22 H 0.106 0.894 23 H 0.074 0.926 24 H 0.042 0.958 25 H 0.225 0.775 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.213 3.985 7.418 9.415 hybrid contribution -0.228 -1.031 -0.412 1.133 sum 3.985 2.954 7.005 8.584 Atomic orbital electron populations 1.21755 0.93809 1.03453 0.99579 1.19316 0.93221 0.79765 0.90685 1.86474 1.26862 1.26941 1.96856 1.20696 1.03370 0.94931 1.00032 1.20745 0.97652 0.98951 0.95122 1.20822 1.06247 0.96294 1.00331 1.20977 0.98461 0.96045 0.98793 1.21209 0.99555 0.99166 0.99188 1.17564 0.89955 0.90252 0.91837 1.19625 1.07684 1.30402 0.94721 0.89303 1.26423 0.99213 0.95679 0.96061 1.69849 1.27289 1.37182 1.14179 0.85569 0.78805 0.78440 0.79211 1.18980 1.20395 1.18003 1.23241 0.97020 0.99666 0.95162 1.22953 0.97867 0.99361 0.96336 1.22791 0.98083 1.00360 0.95384 1.22810 0.95734 1.00888 0.97399 0.89397 0.92599 0.95789 0.77532 0.86166 0.86416 0.87563 0.90175 0.91249 0.89596 0.88998 0.91638 0.90221 0.89986 0.93441 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 8.29 71.98 0.60 -4.82 16 2 C 0.21 8.17 0.76 -11.54 -0.01 8.16 16 3 O -0.56 -19.55 10.56 -148.98 -1.57 -21.12 16 4 C -0.19 -8.44 4.10 -19.40 -0.08 -8.52 16 5 C -0.11 -4.43 9.23 22.22 0.21 -4.22 16 6 C -0.22 -9.12 10.05 22.46 0.23 -8.89 16 7 C -0.12 -5.69 10.02 22.22 0.22 -5.46 16 8 C -0.17 -8.86 8.65 22.73 0.20 -8.66 16 9 C 0.11 5.35 5.16 -21.29 -0.11 5.24 16 10 C -0.49 -24.62 5.39 23.46 0.13 -24.49 16 11 H 0.09 4.23 4.65 -2.91 -0.01 4.22 16 12 C 0.04 1.84 5.24 85.26 0.45 2.29 16 13 N -0.86 -45.80 11.91 21.83 0.26 -45.54 16 14 Si 0.96 38.52 29.57 68.60 2.03 40.54 16 15 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 16 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 18 C -0.13 -4.53 2.59 -10.27 -0.03 -4.55 16 19 C -0.13 -3.48 7.48 31.18 0.23 -3.24 16 20 C -0.13 -3.15 8.09 31.18 0.25 -2.90 16 21 C -0.13 -3.99 6.79 31.12 0.21 -3.78 16 22 H 0.09 3.93 5.06 -2.39 -0.01 3.92 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.02 1.07 8.12 -2.39 -0.02 1.05 16 25 H 0.38 10.62 6.56 -74.06 -0.49 10.14 16 26 H 0.12 4.24 6.44 -2.91 -0.02 4.22 16 27 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 28 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.08 4.38 7.40 -2.91 -0.02 4.36 16 30 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 31 H 0.09 3.28 5.51 -2.39 -0.01 3.27 16 32 H 0.09 2.42 6.82 -2.38 -0.02 2.40 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 2.28 7.03 -2.39 -0.02 2.27 16 Total: -1.00 -56.88 287.90 3.80 -53.08 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.59 Total: 36.89 kcal Atomic # 6 Polarization: -66.35 SS G_CDS: 2.49 Total: -63.86 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.26 Total: -45.54 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.57 Total: -21.12 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.54 kcal Total: -56.88 3.80 -53.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.271 kcal (2) G-P(sol) polarization free energy of solvation -56.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds