Wall clock time and date at job start Mon Mar 30 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86806 * 120.00030 * 2 1 4 4 H 1.48494 * 109.47106 * 240.00255 * 3 2 1 5 5 H 1.48497 * 109.46952 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46725 * 119.99962 * 3 2 1 7 7 C 1.39949 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99761 * 192.04290 * 7 2 1 9 9 C 1.41396 * 119.99761 * 12.03761 * 7 2 1 10 10 C 1.40735 * 120.24167 * 29.84990 * 9 7 2 11 11 C 1.37602 * 119.73948 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.25062 * 359.97438 * 11 10 9 13 13 C 1.38606 * 120.50118 * 359.73092 * 12 11 10 14 14 C 1.37644 * 120.24868 * 0.54964 * 13 12 11 15 15 C 1.50700 * 120.12730 * 179.72434 * 14 13 12 16 16 H 1.09000 * 109.47078 * 177.67657 * 15 14 13 17 17 C 1.52997 * 109.47338 * 57.67340 * 15 14 13 18 18 C 1.53001 * 109.47227 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.46864 * 60.00214 * 18 17 15 20 20 C 1.52995 * 109.47244 * 300.00216 * 19 18 17 21 21 H 1.09009 * 109.46893 * 299.99804 * 20 19 18 22 22 O 1.42895 * 109.47097 * 180.02562 * 20 19 18 23 23 C 1.52998 * 109.47502 * 59.99737 * 20 19 18 24 24 H 0.97000 * 119.99445 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.12813 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.87226 * 180.02562 * 11 10 9 27 27 H 1.07994 * 119.74611 * 180.02562 * 12 11 10 28 28 H 1.08003 * 119.87957 * 180.29666 * 13 12 11 29 29 H 1.09006 * 109.46775 * 60.00146 * 17 15 14 30 30 H 1.09000 * 109.47295 * 300.00185 * 17 15 14 31 31 H 1.08998 * 109.46938 * 300.00153 * 18 17 15 32 32 H 1.09006 * 109.46845 * 180.02562 * 18 17 15 33 33 H 1.09000 * 109.46938 * 59.99949 * 19 18 17 34 34 H 1.09002 * 109.46925 * 179.97438 * 19 18 17 35 35 H 0.96692 * 114.00707 * 59.99466 * 22 20 19 36 36 H 1.09000 * 109.47027 * 60.00053 * 23 20 19 37 37 H 1.08996 * 109.46900 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0702 -1.2223 0.1946 9 6 1.3244 -2.4229 -0.2565 10 6 0.1877 -2.4335 -1.0863 11 6 -0.4700 -3.6177 -1.3280 12 6 -0.0166 -4.7975 -0.7579 13 6 1.1053 -4.7999 0.0561 14 6 1.7756 -3.6261 0.3163 15 6 2.9915 -3.6309 1.2066 16 1 3.4063 -2.6243 1.2605 17 6 4.0406 -4.5848 0.6322 18 6 5.2753 -4.5891 1.5358 19 6 4.8786 -5.0524 2.9390 20 6 3.8294 -4.0986 3.5135 21 1 4.2442 -3.0919 3.5669 22 8 3.4594 -4.5310 4.8242 23 6 2.5948 -4.0942 2.6098 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1673 -1.5156 -1.5310 26 1 -1.3422 -3.6283 -1.9648 27 1 -0.5388 -5.7224 -0.9534 28 1 1.4525 -5.7254 0.4911 29 1 4.3235 -4.2545 -0.3674 30 1 3.6258 -5.5914 0.5783 31 1 5.6899 -3.5825 1.5892 32 1 6.0229 -5.2685 1.1262 33 1 4.4640 -6.0591 2.8855 34 1 5.7583 -5.0559 3.5826 35 1 4.1946 -4.5579 5.4517 36 1 2.1802 -5.1008 2.5564 37 1 1.8476 -3.4143 3.0189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260550802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:47 Heat of formation + Delta-G solvation = -63.084464 kcal Electronic energy + Delta-G solvation = -18066.142411 eV Core-core repulsion = 15385.434244 eV Total energy + Delta-G solvation = -2680.708167 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.04054 -37.30031 -35.16585 -33.56171 -31.56637 -29.55795 -29.21533 -27.70659 -25.13693 -22.60343 -21.88084 -21.06636 -19.84530 -18.78970 -17.22986 -16.73257 -15.50971 -15.08567 -14.47089 -14.18208 -13.92003 -13.68707 -13.33226 -12.77671 -12.46106 -12.37786 -12.18574 -11.66633 -11.56088 -11.26329 -11.11652 -10.99825 -10.73194 -10.65306 -10.49269 -10.22223 -10.07417 -9.99411 -9.51616 -9.19890 -9.15121 -9.06027 -7.29137 -7.26883 -6.66920 -4.32609 2.82684 3.01744 3.08459 3.10822 3.25787 3.96715 4.47747 4.70662 5.03665 5.06100 5.34055 5.56285 5.62339 5.67929 5.86957 5.91287 5.98578 6.04485 6.22428 6.27687 6.37440 6.44209 6.50844 6.53321 6.57429 6.63505 6.92711 6.95553 7.02176 7.22480 7.30915 7.44282 7.67433 7.86708 7.95302 8.07467 8.12342 8.35096 8.66900 8.94209 9.01377 10.28332 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.008670 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.176689 B = 3228.697371 C = 4141.941967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.075 3.925 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.118 3.882 10 C -0.156 4.156 11 C -0.111 4.111 12 C -0.236 4.236 13 C -0.090 4.090 14 C -0.180 4.180 15 C -0.024 4.024 16 H 0.083 0.917 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.147 4.147 20 C 0.102 3.898 21 H 0.053 0.947 22 O -0.570 6.570 23 C -0.096 4.096 24 H 0.279 0.721 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.369 0.631 36 H 0.060 0.940 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 -4.471 3.649 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.096 0.904 9 C 0.116 3.884 10 C -0.176 4.176 11 C -0.130 4.130 12 C -0.256 4.256 13 C -0.108 4.108 14 C -0.181 4.181 15 C -0.042 4.042 16 H 0.101 0.899 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.185 4.185 20 C 0.044 3.956 21 H 0.071 0.929 22 O -0.375 6.375 23 C -0.134 4.134 24 H 0.090 0.910 25 H 0.133 0.867 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.214 0.786 36 H 0.079 0.921 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.937 -4.335 3.372 8.848 hybrid contribution 0.780 0.790 0.277 1.144 sum 7.717 -3.545 3.649 9.243 Atomic orbital electron populations 1.69793 1.07379 1.28976 1.36770 1.25843 0.94746 1.00967 0.92538 0.86426 0.80100 0.80694 0.79816 1.18972 1.20455 1.19110 1.19463 0.96085 0.90498 1.43493 0.90378 1.17449 0.91214 0.91530 0.88229 1.21305 0.98985 0.96344 1.00943 1.20692 0.98666 0.93647 0.99953 1.20374 1.01123 0.96547 1.07530 1.20339 0.95850 0.96065 0.98559 1.19535 1.00302 0.93968 1.04305 1.19763 0.93592 0.99253 0.91581 0.89916 1.21663 0.94752 0.99942 0.98547 1.21507 0.98189 1.01064 0.94676 1.22236 0.98454 1.00486 0.97298 1.21968 0.95847 0.95696 0.82111 0.92927 1.86558 1.38857 1.90595 1.21475 1.21525 0.95725 1.01989 0.94137 0.91039 0.86654 0.89640 0.89739 0.89568 0.91975 0.92459 0.92038 0.92420 0.91517 0.92649 0.78570 0.92089 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.91 10.99 55.55 0.61 -20.30 16 2 C 0.08 1.89 5.22 -17.34 -0.09 1.79 16 3 Si 0.90 18.72 29.58 -169.99 -5.03 13.69 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.47 -11.98 8.23 -37.74 -0.31 -12.29 16 8 H 0.08 1.92 6.38 -52.49 -0.33 1.58 16 9 C 0.12 3.07 5.53 -106.83 -0.59 2.48 16 10 C -0.16 -4.08 8.65 -38.87 -0.34 -4.42 16 11 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 12 C -0.24 -5.38 10.05 -39.29 -0.39 -5.77 16 13 C -0.09 -2.01 8.71 -39.66 -0.35 -2.36 16 14 C -0.18 -4.19 4.84 -103.91 -0.50 -4.69 16 15 C -0.02 -0.46 2.22 -91.77 -0.20 -0.67 16 16 H 0.08 1.74 5.74 -51.93 -0.30 1.44 16 17 C -0.11 -1.87 4.99 -26.73 -0.13 -2.00 16 18 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 19 C -0.15 -1.93 5.54 -26.73 -0.15 -2.08 16 20 C 0.10 1.58 3.47 -26.73 -0.09 1.48 16 21 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 22 O -0.57 -8.50 13.32 -35.23 -0.47 -8.97 16 23 C -0.10 -1.80 4.69 -26.73 -0.13 -1.93 16 24 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 25 H 0.12 3.11 6.36 -52.49 -0.33 2.78 16 26 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.09 1.74 7.09 -52.48 -0.37 1.37 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.95 7.26 -51.93 -0.38 0.57 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.37 3.63 9.08 45.56 0.41 4.05 16 36 H 0.06 1.15 7.53 -51.93 -0.39 0.76 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -27.85 294.14 -8.92 -36.77 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -4.63 Total: 9.63 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: -3.83 Total: -35.25 kcal Atomic # 7 Polarization: -20.91 SS G_CDS: 0.61 Total: -20.30 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.47 Total: -8.97 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.85 -8.92 -36.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260550802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.319 kcal (2) G-P(sol) polarization free energy of solvation -27.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds