Wall clock time and date at job start Mon Mar 30 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86806 * 120.00030 * 2 1 4 4 H 1.48494 * 109.47106 * 240.00255 * 3 2 1 5 5 H 1.48497 * 109.46952 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46725 * 119.99962 * 3 2 1 7 7 C 1.39949 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99761 * 192.04290 * 7 2 1 9 9 C 1.41396 * 119.99761 * 12.03761 * 7 2 1 10 10 C 1.40735 * 120.24167 * 29.84990 * 9 7 2 11 11 C 1.37602 * 119.73948 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.25062 * 359.97438 * 11 10 9 13 13 C 1.38606 * 120.50118 * 359.73092 * 12 11 10 14 14 C 1.37644 * 120.24868 * 0.54964 * 13 12 11 15 15 C 1.50700 * 120.12730 * 179.72434 * 14 13 12 16 16 H 1.09000 * 109.47078 * 177.67657 * 15 14 13 17 17 C 1.52997 * 109.47338 * 57.67340 * 15 14 13 18 18 C 1.53001 * 109.47227 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.46864 * 60.00214 * 18 17 15 20 20 C 1.52995 * 109.47244 * 300.00216 * 19 18 17 21 21 H 1.09009 * 109.46893 * 299.99804 * 20 19 18 22 22 O 1.42895 * 109.47097 * 180.02562 * 20 19 18 23 23 C 1.52998 * 109.47502 * 59.99737 * 20 19 18 24 24 H 0.97000 * 119.99445 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.12813 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.87226 * 180.02562 * 11 10 9 27 27 H 1.07994 * 119.74611 * 180.02562 * 12 11 10 28 28 H 1.08003 * 119.87957 * 180.29666 * 13 12 11 29 29 H 1.09006 * 109.46775 * 60.00146 * 17 15 14 30 30 H 1.09000 * 109.47295 * 300.00185 * 17 15 14 31 31 H 1.08998 * 109.46938 * 300.00153 * 18 17 15 32 32 H 1.09006 * 109.46845 * 180.02562 * 18 17 15 33 33 H 1.09000 * 109.46938 * 59.99949 * 19 18 17 34 34 H 1.09002 * 109.46925 * 179.97438 * 19 18 17 35 35 H 0.96692 * 114.00707 * 59.99466 * 22 20 19 36 36 H 1.09000 * 109.47027 * 60.00053 * 23 20 19 37 37 H 1.08996 * 109.46900 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0702 -1.2223 0.1946 9 6 1.3244 -2.4229 -0.2565 10 6 0.1877 -2.4335 -1.0863 11 6 -0.4700 -3.6177 -1.3280 12 6 -0.0166 -4.7975 -0.7579 13 6 1.1053 -4.7999 0.0561 14 6 1.7756 -3.6261 0.3163 15 6 2.9915 -3.6309 1.2066 16 1 3.4063 -2.6243 1.2605 17 6 4.0406 -4.5848 0.6322 18 6 5.2753 -4.5891 1.5358 19 6 4.8786 -5.0524 2.9390 20 6 3.8294 -4.0986 3.5135 21 1 4.2442 -3.0919 3.5669 22 8 3.4594 -4.5310 4.8242 23 6 2.5948 -4.0942 2.6098 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1673 -1.5156 -1.5310 26 1 -1.3422 -3.6283 -1.9648 27 1 -0.5388 -5.7224 -0.9534 28 1 1.4525 -5.7254 0.4911 29 1 4.3235 -4.2545 -0.3674 30 1 3.6258 -5.5914 0.5783 31 1 5.6899 -3.5825 1.5892 32 1 6.0229 -5.2685 1.1262 33 1 4.4640 -6.0591 2.8855 34 1 5.7583 -5.0559 3.5826 35 1 4.1946 -4.5579 5.4517 36 1 2.1802 -5.1008 2.5564 37 1 1.8476 -3.4143 3.0189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260550802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:47 Heat of formation + Delta-G solvation = -78.861525 kcal Electronic energy + Delta-G solvation = -18066.826556 eV Core-core repulsion = 15385.434244 eV Total energy + Delta-G solvation = -2681.392312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52202 -38.88300 -36.47788 -35.44241 -33.05264 -31.42404 -30.58832 -29.28446 -27.02344 -24.12562 -23.15649 -22.83469 -21.39636 -20.29226 -19.07448 -18.02563 -17.28937 -16.51655 -16.07991 -15.66253 -15.37836 -15.14462 -14.81182 -14.42473 -14.15544 -13.80845 -13.60549 -13.23892 -13.15316 -12.87207 -12.78220 -12.63577 -12.27845 -12.22066 -11.93654 -11.66611 -11.63839 -11.37814 -11.04420 -10.94710 -10.81269 -10.56487 -9.19742 -9.13680 -8.54249 -6.28472 1.01617 1.14382 1.37817 1.48441 1.53918 2.22550 2.81434 3.32290 3.74430 3.88011 3.88365 4.15793 4.29798 4.36022 4.50596 4.56234 4.62537 4.67099 4.70268 4.74515 4.81212 4.99244 5.11913 5.16076 5.20924 5.30191 5.32187 5.34717 5.37595 5.53144 5.56126 5.65823 5.81339 6.08260 6.18209 6.21520 6.46441 6.75690 6.96824 7.01643 7.10764 8.42961 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.008670 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.176689 B = 3228.697371 C = 4141.941967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.031 3.969 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.491 4.491 8 H 0.081 0.919 9 C 0.083 3.917 10 C -0.186 4.186 11 C -0.121 4.121 12 C -0.236 4.236 13 C -0.097 4.097 14 C -0.183 4.183 15 C -0.020 4.020 16 H 0.064 0.936 17 C -0.106 4.106 18 C -0.112 4.112 19 C -0.138 4.138 20 C 0.107 3.893 21 H 0.053 0.947 22 O -0.586 6.586 23 C -0.092 4.092 24 H 0.283 0.717 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.393 0.607 36 H 0.058 0.942 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.746 -5.629 4.511 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.521 4.521 8 H 0.099 0.901 9 C 0.081 3.919 10 C -0.205 4.205 11 C -0.139 4.139 12 C -0.255 4.255 13 C -0.115 4.115 14 C -0.184 4.184 15 C -0.039 4.039 16 H 0.082 0.918 17 C -0.144 4.144 18 C -0.149 4.149 19 C -0.175 4.175 20 C 0.049 3.951 21 H 0.071 0.929 22 O -0.395 6.395 23 C -0.130 4.130 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.123 0.877 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.242 0.758 36 H 0.077 0.923 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.960 -5.511 4.245 11.344 hybrid contribution 0.086 1.034 0.032 1.038 sum 9.046 -4.477 4.277 10.962 Atomic orbital electron populations 1.69882 1.08900 1.29995 1.37922 1.26699 0.95482 1.04293 0.91712 0.85353 0.78765 0.76183 0.80045 1.18405 1.19787 1.18321 1.19701 0.96349 0.91359 1.44731 0.90141 1.17851 0.91917 0.92974 0.89159 1.21298 1.00311 0.96553 1.02368 1.20949 0.99193 0.93434 1.00348 1.20775 1.01043 0.97197 1.06464 1.20671 0.95669 0.96776 0.98338 1.20008 1.01233 0.93433 1.03768 1.19718 0.93024 0.99351 0.91784 0.91761 1.21589 0.95258 0.98886 0.98650 1.21487 0.96988 1.02055 0.94412 1.22165 0.98746 0.99423 0.97199 1.21790 0.94510 0.96732 0.82107 0.92925 1.86494 1.40761 1.90508 1.21688 1.21401 0.96755 1.00584 0.94259 0.90688 0.88695 0.87717 0.86749 0.86937 0.92969 0.92035 0.91850 0.89794 0.91471 0.89313 0.75784 0.92324 0.94912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.56 10.99 21.83 0.24 -45.32 16 2 C 0.03 1.59 5.22 85.26 0.45 2.03 16 3 Si 0.98 39.08 29.58 68.60 2.03 41.11 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.49 -26.28 8.23 23.46 0.19 -26.08 16 8 H 0.08 4.10 6.38 -2.91 -0.02 4.08 16 9 C 0.08 4.49 5.53 -21.29 -0.12 4.37 16 10 C -0.19 -10.10 8.65 22.73 0.20 -9.90 16 11 C -0.12 -5.84 10.02 22.22 0.22 -5.61 16 12 C -0.24 -10.49 10.05 22.46 0.23 -10.26 16 13 C -0.10 -4.25 8.71 22.22 0.19 -4.06 16 14 C -0.18 -8.66 4.84 -19.40 -0.09 -8.76 16 15 C -0.02 -0.80 2.22 -11.54 -0.03 -0.83 16 16 H 0.06 2.76 5.74 -2.39 -0.01 2.75 16 17 C -0.11 -3.38 4.99 30.59 0.15 -3.23 16 18 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 19 C -0.14 -3.10 5.54 30.59 0.17 -2.93 16 20 C 0.11 3.09 3.47 30.59 0.11 3.20 16 21 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 22 O -0.59 -16.13 13.32 -148.98 -1.98 -18.12 16 23 C -0.09 -3.43 4.69 30.59 0.14 -3.29 16 24 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 25 H 0.09 5.44 6.36 -2.91 -0.02 5.42 16 26 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 27 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 28 H 0.11 4.31 7.09 -2.91 -0.02 4.29 16 29 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 30 H 0.06 1.89 7.26 -2.39 -0.02 1.88 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.39 6.47 9.08 -74.06 -0.67 5.80 16 36 H 0.06 2.17 7.53 -2.39 -0.02 2.15 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -62.16 294.14 2.67 -59.49 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.39 Total: 30.71 kcal Atomic # 6 Polarization: -69.87 SS G_CDS: 1.99 Total: -67.88 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.24 Total: -45.32 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.98 Total: -18.12 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -62.16 2.67 -59.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260550802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.368 kcal (2) G-P(sol) polarization free energy of solvation -62.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds