Wall clock time and date at job start Mon Mar 30 2020 05:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.21660 * 2 1 4 4 C 1.50642 * 109.25359 * 119.44814 * 2 1 3 5 5 C 1.38958 * 117.72868 * 282.83875 * 4 2 1 6 6 C 1.37952 * 120.66032 * 179.63674 * 5 4 2 7 7 C 1.38175 * 119.83870 * 359.46955 * 6 5 4 8 8 C 1.38438 * 119.70095 * 0.67179 * 7 6 5 9 9 O 1.35907 * 119.78123 * 179.71033 * 8 7 6 10 10 C 1.37571 * 122.55461 * 102.45260 * 4 2 1 11 11 C 1.50621 * 122.59126 * 0.85969 * 10 4 2 12 12 C 1.52740 * 110.58167 * 342.10484 * 11 10 4 13 13 C 1.52728 * 109.24864 * 240.55747 * 2 1 3 14 14 H 1.09002 * 109.68009 * 171.06040 * 13 2 1 15 15 C 1.50705 * 109.67659 * 50.52410 * 13 2 1 16 16 H 1.08003 * 120.00010 * 1.05199 * 15 13 2 17 17 C 1.37873 * 119.99886 * 181.06117 * 15 13 2 18 18 N 1.31519 * 120.00405 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00031 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46811 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47080 * 119.99728 * 19 17 15 22 22 H 1.48503 * 109.47041 * 239.99766 * 19 17 15 23 23 H 1.09004 * 109.46812 * 300.55544 * 1 2 3 24 24 H 1.09001 * 109.47348 * 60.55218 * 1 2 3 25 25 H 1.08998 * 109.47613 * 180.55842 * 1 2 3 26 26 H 1.09006 * 109.47211 * 179.44474 * 3 2 1 27 27 H 1.08995 * 109.47530 * 299.44164 * 3 2 1 28 28 H 1.08994 * 109.47220 * 59.45068 * 3 2 1 29 29 H 1.08002 * 119.66674 * 359.35037 * 5 4 2 30 30 H 1.08003 * 120.08117 * 179.72811 * 6 5 4 31 31 H 1.07996 * 120.15380 * 180.40370 * 7 6 5 32 32 H 0.96698 * 114.00039 * 269.97748 * 9 8 7 33 33 H 1.09002 * 109.25303 * 102.37994 * 11 10 4 34 34 H 1.08995 * 109.26056 * 221.85343 * 11 10 4 35 35 H 1.09000 * 109.68139 * 170.84973 * 12 11 10 36 36 H 1.08998 * 109.68247 * 291.40914 * 12 11 10 37 37 H 0.96998 * 120.00184 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4447 0.0000 4 6 2.0267 -0.6992 1.2384 5 6 1.9819 0.0007 2.4380 6 6 2.4145 -0.5840 3.6102 7 6 2.8875 -1.8822 3.5972 8 6 2.9369 -2.5823 2.4039 9 8 3.4074 -3.8572 2.3883 10 6 2.5069 -1.9882 1.2185 11 6 2.5939 -2.8022 -0.0458 12 6 1.7054 -2.2015 -1.1333 13 6 2.0335 -0.7088 -1.2557 14 1 3.1117 -0.5759 -1.3448 15 6 1.3490 -0.1366 -2.4703 16 1 0.6370 0.6680 -2.3601 17 6 1.6317 -0.6403 -3.7222 18 7 2.4990 -1.6198 -3.8565 19 14 0.7828 0.0685 -5.2277 20 1 -0.1414 1.1532 -4.8101 21 1 1.8018 0.6167 -6.1584 22 1 0.0127 -1.0015 -5.9114 23 1 -0.3633 0.5225 0.8850 24 1 -0.3634 0.5052 -0.8949 25 1 -0.3634 -1.0276 0.0100 26 1 3.1236 1.4496 0.0100 27 1 1.6762 1.9541 -0.8949 28 1 1.6599 1.9597 0.8850 29 1 1.6089 1.0142 2.4520 30 1 2.3795 -0.0299 4.5366 31 1 3.2213 -2.3471 4.5130 32 1 4.3606 -3.9229 2.2392 33 1 3.6269 -2.8170 -0.3933 34 1 2.2693 -3.8221 0.1601 35 1 1.9004 -2.6993 -2.0832 36 1 0.6573 -2.3259 -0.8613 37 1 2.6981 -1.9739 -4.7373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260562609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:10 Heat of formation + Delta-G solvation = -37.784859 kcal Electronic energy + Delta-G solvation = -18540.995968 eV Core-core repulsion = 15861.384874 eV Total energy + Delta-G solvation = -2679.611094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09734 -37.54565 -35.60276 -32.89329 -32.43349 -29.48366 -28.41525 -26.42323 -26.19752 -24.23287 -22.21076 -21.52028 -20.13084 -18.33469 -16.94073 -16.20997 -15.59872 -15.49843 -14.78684 -14.45441 -13.73862 -13.44577 -13.09421 -12.91994 -12.45672 -12.28752 -12.02516 -11.53379 -11.45452 -11.22466 -10.98954 -10.92351 -10.77983 -10.53643 -10.50554 -10.36024 -10.07575 -9.75118 -9.43043 -8.85180 -8.58467 -8.29639 -8.06725 -8.02413 -5.96939 -4.01972 1.65951 1.81304 3.29709 3.38533 3.41122 4.03743 4.44235 4.59556 5.24197 5.27587 5.32701 5.47869 5.68794 5.83122 5.93925 5.94827 6.06787 6.23612 6.32966 6.37643 6.43217 6.49066 6.66506 6.71186 6.75779 6.79044 6.87262 6.94609 7.10073 7.13969 7.17002 7.29312 7.32158 7.56643 7.77332 7.98685 8.01106 8.14073 8.47952 9.00299 9.61776 11.08756 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032165 B = 0.007683 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.308328 B = 3643.683664 C = 4263.929213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.023 4.023 3 C -0.128 4.128 4 C -0.035 4.035 5 C -0.132 4.132 6 C -0.121 4.121 7 C -0.160 4.160 8 C 0.090 3.910 9 O -0.499 6.499 10 C -0.086 4.086 11 C -0.078 4.078 12 C -0.115 4.115 13 C 0.064 3.936 14 H 0.027 0.973 15 C -0.504 4.504 16 H 0.061 0.939 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.886 3.114 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.286 1.286 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.383 0.617 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.037 0.963 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 0.850 10.799 10.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.023 4.023 3 C -0.185 4.185 4 C -0.035 4.035 5 C -0.150 4.150 6 C -0.139 4.139 7 C -0.178 4.178 8 C 0.046 3.954 9 O -0.309 6.309 10 C -0.086 4.086 11 C -0.115 4.115 12 C -0.152 4.152 13 C 0.045 3.955 14 H 0.045 0.955 15 C -0.542 4.542 16 H 0.079 0.921 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 H 0.048 0.952 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.238 0.762 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.550 0.594 10.760 10.791 hybrid contribution 0.176 0.338 -0.785 0.873 sum 0.726 0.932 9.975 10.045 Atomic orbital electron populations 1.21843 0.94506 1.01339 1.00454 1.19586 0.95278 0.94526 0.92950 1.21835 1.00261 0.95721 1.00661 1.19901 0.95466 0.92679 0.95476 1.21279 1.01196 1.00248 0.92232 1.20802 1.00399 0.94733 0.97940 1.21153 1.04292 0.94989 0.97406 1.18550 1.00420 0.84116 0.92344 1.84775 1.27844 1.23512 1.94725 1.20252 0.99040 0.94228 0.95096 1.20485 1.01303 0.97298 0.92365 1.21720 0.96039 0.99516 0.97966 1.18667 0.96291 0.90844 0.89680 0.95523 1.21271 1.24128 1.17990 0.90781 0.92081 1.24957 0.95199 0.95120 0.98796 1.69886 1.33947 1.26159 1.22932 0.86630 0.79481 0.79043 0.83405 1.19847 1.21210 1.21177 0.95152 0.91070 0.93145 0.93588 0.91553 0.94455 0.86185 0.86521 0.86415 0.76241 0.91672 0.92188 0.88389 0.94455 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 7.80 37.16 0.29 -2.11 16 2 C -0.02 -0.47 0.41 -155.83 -0.06 -0.53 16 3 C -0.13 -2.35 7.82 37.16 0.29 -2.06 16 4 C -0.04 -0.66 4.70 -104.63 -0.49 -1.16 16 5 C -0.13 -2.15 8.90 -39.42 -0.35 -2.50 16 6 C -0.12 -1.76 10.04 -39.71 -0.40 -2.16 16 7 C -0.16 -2.42 9.98 -39.53 -0.39 -2.81 16 8 C 0.09 1.53 6.66 -39.08 -0.26 1.27 16 9 O -0.50 -7.63 12.53 -19.45 -0.24 -7.88 16 10 C -0.09 -1.64 5.75 -104.47 -0.60 -2.25 16 11 C -0.08 -1.58 5.28 -28.06 -0.15 -1.73 16 12 C -0.11 -2.67 5.10 -26.70 -0.14 -2.80 16 13 C 0.06 1.51 1.35 -91.74 -0.12 1.39 16 14 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 15 C -0.50 -12.98 7.14 -34.44 -0.25 -13.23 16 16 H 0.06 1.55 5.65 -52.48 -0.30 1.25 16 17 C 0.06 1.60 5.28 -17.82 -0.09 1.50 16 18 N -0.89 -24.66 11.32 55.43 0.63 -24.04 16 19 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H 0.03 0.51 8.07 -51.93 -0.42 0.09 16 24 H 0.07 1.43 6.05 -51.93 -0.31 1.11 16 25 H 0.05 1.00 6.47 -51.93 -0.34 0.67 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.28 7.17 -51.93 -0.37 0.90 16 28 H 0.04 0.58 6.40 -51.93 -0.33 0.25 16 29 H 0.12 1.76 6.33 -52.49 -0.33 1.43 16 30 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 31 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.38 4.09 9.06 45.56 0.41 4.50 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.17 7.75 -51.93 -0.40 0.77 16 35 H 0.10 2.55 5.93 -51.93 -0.31 2.24 16 36 H 0.04 0.86 6.28 -51.93 -0.33 0.54 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 284.86 15.07 4.29 4.29 Total: -1.00 -28.34 284.86 -7.34 -35.69 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.27 Total: 5.38 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -2.73 Total: -29.18 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.63 Total: -24.04 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.24 Total: -7.88 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.34 -7.34 -35.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260562609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.098 kcal (2) G-P(sol) polarization free energy of solvation -28.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds