Wall clock time and date at job start Mon Mar 30 2020 05:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.21660 * 2 1 4 4 C 1.50642 * 109.25359 * 119.44814 * 2 1 3 5 5 C 1.38958 * 117.72868 * 282.83875 * 4 2 1 6 6 C 1.37952 * 120.66032 * 179.63674 * 5 4 2 7 7 C 1.38175 * 119.83870 * 359.46955 * 6 5 4 8 8 C 1.38438 * 119.70095 * 0.67179 * 7 6 5 9 9 O 1.35907 * 119.78123 * 179.71033 * 8 7 6 10 10 C 1.37571 * 122.55461 * 102.45260 * 4 2 1 11 11 C 1.50621 * 122.59126 * 0.85969 * 10 4 2 12 12 C 1.52740 * 110.58167 * 342.10484 * 11 10 4 13 13 C 1.52728 * 109.24864 * 240.55747 * 2 1 3 14 14 H 1.09002 * 109.68009 * 171.06040 * 13 2 1 15 15 C 1.50705 * 109.67659 * 50.52410 * 13 2 1 16 16 H 1.08003 * 120.00010 * 1.05199 * 15 13 2 17 17 C 1.37873 * 119.99886 * 181.06117 * 15 13 2 18 18 N 1.31519 * 120.00405 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00031 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46811 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47080 * 119.99728 * 19 17 15 22 22 H 1.48503 * 109.47041 * 239.99766 * 19 17 15 23 23 H 1.09004 * 109.46812 * 300.55544 * 1 2 3 24 24 H 1.09001 * 109.47348 * 60.55218 * 1 2 3 25 25 H 1.08998 * 109.47613 * 180.55842 * 1 2 3 26 26 H 1.09006 * 109.47211 * 179.44474 * 3 2 1 27 27 H 1.08995 * 109.47530 * 299.44164 * 3 2 1 28 28 H 1.08994 * 109.47220 * 59.45068 * 3 2 1 29 29 H 1.08002 * 119.66674 * 359.35037 * 5 4 2 30 30 H 1.08003 * 120.08117 * 179.72811 * 6 5 4 31 31 H 1.07996 * 120.15380 * 180.40370 * 7 6 5 32 32 H 0.96698 * 114.00039 * 269.97748 * 9 8 7 33 33 H 1.09002 * 109.25303 * 102.37994 * 11 10 4 34 34 H 1.08995 * 109.26056 * 221.85343 * 11 10 4 35 35 H 1.09000 * 109.68139 * 170.84973 * 12 11 10 36 36 H 1.08998 * 109.68247 * 291.40914 * 12 11 10 37 37 H 0.96998 * 120.00184 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4447 0.0000 4 6 2.0267 -0.6992 1.2384 5 6 1.9819 0.0007 2.4380 6 6 2.4145 -0.5840 3.6102 7 6 2.8875 -1.8822 3.5972 8 6 2.9369 -2.5823 2.4039 9 8 3.4074 -3.8572 2.3883 10 6 2.5069 -1.9882 1.2185 11 6 2.5939 -2.8022 -0.0458 12 6 1.7054 -2.2015 -1.1333 13 6 2.0335 -0.7088 -1.2557 14 1 3.1117 -0.5759 -1.3448 15 6 1.3490 -0.1366 -2.4703 16 1 0.6370 0.6680 -2.3601 17 6 1.6317 -0.6403 -3.7222 18 7 2.4990 -1.6198 -3.8565 19 14 0.7828 0.0685 -5.2277 20 1 -0.1414 1.1532 -4.8101 21 1 1.8018 0.6167 -6.1584 22 1 0.0127 -1.0015 -5.9114 23 1 -0.3633 0.5225 0.8850 24 1 -0.3634 0.5052 -0.8949 25 1 -0.3634 -1.0276 0.0100 26 1 3.1236 1.4496 0.0100 27 1 1.6762 1.9541 -0.8949 28 1 1.6599 1.9597 0.8850 29 1 1.6089 1.0142 2.4520 30 1 2.3795 -0.0299 4.5366 31 1 3.2213 -2.3471 4.5130 32 1 4.3606 -3.9229 2.2392 33 1 3.6269 -2.8170 -0.3933 34 1 2.2693 -3.8221 0.1601 35 1 1.9004 -2.6993 -2.0832 36 1 0.6573 -2.3259 -0.8613 37 1 2.6981 -1.9739 -4.7373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260562609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:10 Heat of formation + Delta-G solvation = -54.075460 kcal Electronic energy + Delta-G solvation = -18541.702382 eV Core-core repulsion = 15861.384874 eV Total energy + Delta-G solvation = -2680.317508 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.49152 -38.94484 -36.96837 -34.55567 -34.22913 -31.03637 -29.75218 -27.99550 -27.92488 -25.95846 -23.61632 -23.08711 -21.63929 -19.82792 -18.34949 -18.10596 -17.04434 -16.88064 -16.21660 -16.14095 -15.26137 -15.00323 -14.59007 -14.51705 -14.04474 -13.94051 -13.42343 -13.08062 -12.92960 -12.87426 -12.58639 -12.53723 -12.35798 -12.23673 -12.09689 -12.01769 -11.79061 -11.35352 -11.23384 -10.56431 -10.43365 -10.28142 -9.39714 -9.32446 -8.01661 -6.12494 0.41812 0.53490 1.41232 1.44376 1.53925 2.46959 2.79902 3.25764 3.41288 3.93907 3.98385 4.18565 4.31359 4.34310 4.43923 4.60107 4.62997 4.68840 4.84263 4.88507 4.97187 5.04473 5.11037 5.17913 5.27268 5.34984 5.39945 5.48494 5.50767 5.55508 5.59442 5.65204 5.74444 5.96850 6.05496 6.09281 6.19830 6.48485 6.90623 6.98056 7.53931 9.03147 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032165 B = 0.007683 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.308328 B = 3643.683664 C = 4263.929213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.023 4.023 3 C -0.122 4.122 4 C -0.055 4.055 5 C -0.135 4.135 6 C -0.106 4.106 7 C -0.156 4.156 8 C 0.087 3.913 9 O -0.508 6.508 10 C -0.119 4.119 11 C -0.066 4.066 12 C -0.108 4.108 13 C 0.066 3.934 14 H -0.013 1.013 15 C -0.509 4.509 16 H 0.064 0.936 17 C 0.008 3.992 18 N -0.920 5.920 19 Si 0.946 3.054 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.286 1.286 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.157 0.843 31 H 0.147 0.853 32 H 0.402 0.598 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 2.057 13.452 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.023 4.023 3 C -0.179 4.179 4 C -0.056 4.056 5 C -0.152 4.152 6 C -0.124 4.124 7 C -0.174 4.174 8 C 0.043 3.957 9 O -0.320 6.320 10 C -0.119 4.119 11 C -0.103 4.103 12 C -0.146 4.146 13 C 0.047 3.953 14 H 0.006 0.994 15 C -0.547 4.547 16 H 0.082 0.918 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.772 3.228 20 H -0.188 1.188 21 H -0.212 1.212 22 H -0.213 1.213 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.158 0.842 30 H 0.175 0.825 31 H 0.165 0.835 32 H 0.260 0.740 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.058 1.806 13.418 13.539 hybrid contribution 0.375 -0.077 -1.545 1.592 sum 0.433 1.730 11.872 12.006 Atomic orbital electron populations 1.21761 0.93919 1.00632 1.01188 1.19467 0.95752 0.95195 0.91902 1.21776 0.99767 0.94783 1.01604 1.19854 0.96883 0.92878 0.95943 1.21465 1.01183 1.00948 0.91649 1.21251 0.97874 0.94512 0.98757 1.21502 1.03209 0.95178 0.97495 1.18642 1.00237 0.84540 0.92292 1.84716 1.29701 1.22916 1.94662 1.20211 1.01769 0.94861 0.95082 1.20239 0.99753 0.97627 0.92649 1.21521 0.96272 0.99411 0.97440 1.18543 0.93718 0.91549 0.91455 0.99449 1.21624 1.23752 1.17687 0.91686 0.91760 1.25703 0.96001 0.95605 1.01603 1.70038 1.35381 1.27419 1.23229 0.85689 0.78513 0.78439 0.80121 1.18808 1.21199 1.21263 0.92135 0.92407 0.94593 0.94373 0.92983 0.90980 0.84215 0.82513 0.83502 0.73999 0.92898 0.92024 0.91814 0.95009 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 7.80 71.98 0.56 -3.89 16 2 C -0.02 -0.92 0.41 -53.04 -0.02 -0.95 16 3 C -0.12 -4.37 7.82 71.98 0.56 -3.81 16 4 C -0.06 -2.03 4.70 -19.87 -0.09 -2.12 16 5 C -0.13 -3.90 8.90 22.37 0.20 -3.70 16 6 C -0.11 -2.58 10.04 22.19 0.22 -2.36 16 7 C -0.16 -4.06 9.98 22.30 0.22 -3.84 16 8 C 0.09 2.79 6.66 22.60 0.15 2.94 16 9 O -0.51 -14.68 12.53 -92.51 -1.16 -15.84 16 10 C -0.12 -4.51 5.75 -19.77 -0.11 -4.63 16 11 C -0.07 -2.78 5.28 29.74 0.16 -2.62 16 12 C -0.11 -5.32 5.10 30.61 0.16 -5.16 16 13 C 0.07 3.25 1.35 -11.52 -0.02 3.24 16 14 H -0.01 -0.71 8.08 -2.39 -0.02 -0.73 16 15 C -0.51 -27.05 7.14 25.60 0.18 -26.86 16 16 H 0.06 3.30 5.65 -2.91 -0.02 3.29 16 17 C 0.01 0.46 5.28 84.65 0.45 0.91 16 18 N -0.92 -53.30 11.32 21.45 0.24 -53.05 16 19 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H 0.06 1.89 8.07 -2.38 -0.02 1.87 16 24 H 0.06 2.29 6.05 -2.39 -0.01 2.28 16 25 H 0.03 1.42 6.47 -2.39 -0.02 1.41 16 26 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.05 1.97 7.17 -2.39 -0.02 1.96 16 28 H 0.07 2.04 6.40 -2.39 -0.02 2.03 16 29 H 0.14 3.43 6.33 -2.91 -0.02 3.41 16 30 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.40 7.96 9.06 -74.06 -0.67 7.29 16 33 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 2.50 7.75 -2.39 -0.02 2.48 16 35 H 0.06 3.54 5.93 -2.39 -0.01 3.52 16 36 H 0.03 1.54 6.28 -2.39 -0.01 1.52 16 37 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -63.07 284.86 4.14 -58.93 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.41 Total: 17.30 kcal Atomic # 6 Polarization: -55.48 SS G_CDS: 2.62 Total: -52.86 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.24 Total: -53.05 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.16 Total: -15.84 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -63.07 4.14 -58.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260562609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.856 kcal (2) G-P(sol) polarization free energy of solvation -63.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds