Wall clock time and date at job start Mon Mar 30 2020 05:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86805 * 119.99806 * 2 1 4 4 H 1.48497 * 109.46875 * 239.99859 * 3 2 1 5 5 H 1.48503 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46783 * 119.99951 * 3 2 1 7 7 C 1.37870 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00432 * 0.02562 * 7 2 1 10 10 H 1.08993 * 110.43900 * 57.45577 * 9 7 2 11 11 C 1.54273 * 110.59505 * 294.83683 * 9 7 2 12 12 C 1.53869 * 106.59806 * 217.65613 * 11 9 7 13 13 C 1.54266 * 106.60137 * 0.02562 * 12 11 9 14 14 H 1.09002 * 110.48845 * 264.93389 * 13 12 11 15 15 O 1.42905 * 110.59994 * 142.34388 * 13 12 11 16 16 C 1.42899 * 114.00156 * 93.31902 * 15 13 12 17 17 C 1.50696 * 109.47203 * 179.97438 * 16 15 13 18 18 C 1.38230 * 120.00163 * 269.72962 * 17 16 15 19 19 C 1.38235 * 119.99847 * 179.79061 * 18 17 16 20 20 C 1.38236 * 119.99997 * 0.45818 * 19 18 17 21 21 C 1.38235 * 119.99720 * 359.77458 * 20 19 18 22 22 C 1.38228 * 120.00286 * 0.02562 * 21 20 19 23 23 C 1.54885 * 110.48774 * 180.02562 * 9 7 2 24 24 H 0.97000 * 119.99889 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.03192 * 336.94613 * 11 9 7 26 26 H 1.09003 * 110.02871 * 98.32331 * 11 9 7 27 27 H 1.09003 * 110.03349 * 240.71458 * 12 11 9 28 28 H 1.08998 * 110.03555 * 119.28911 * 12 11 9 29 29 H 1.09000 * 109.47214 * 300.00199 * 16 15 13 30 30 H 1.09004 * 109.47026 * 59.99842 * 16 15 13 31 31 H 1.08001 * 120.00227 * 359.97438 * 18 17 16 32 32 H 1.08006 * 119.99909 * 180.25320 * 19 18 17 33 33 H 1.07997 * 120.00028 * 179.78737 * 20 19 18 34 34 H 1.08008 * 119.99512 * 179.97438 * 21 20 19 35 35 H 1.08006 * 119.99944 * 179.97438 * 22 21 20 36 36 H 1.08999 * 110.76189 * 38.43687 * 23 9 7 37 37 H 1.08999 * 110.91620 * 275.13781 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5853 -2.5542 -0.8607 11 6 0.4540 -2.6655 1.3108 12 6 0.5379 -4.1543 1.6903 13 6 1.3836 -4.8406 0.5978 14 1 0.7395 -5.2739 -0.1673 15 8 2.2243 -5.8449 1.1696 16 6 1.6531 -7.1547 1.1616 17 6 2.6204 -8.1284 1.7839 18 6 3.5456 -8.7842 0.9936 19 6 4.4357 -9.6740 1.5652 20 6 4.3944 -9.9152 2.9258 21 6 3.4659 -9.2629 3.7153 22 6 2.5786 -8.3700 3.1444 23 6 2.2366 -3.6940 0.0018 24 1 -0.4850 0.8401 -0.0004 25 1 0.8965 -2.0541 2.0973 26 1 -0.5856 -2.3773 1.1545 27 1 -0.4611 -4.5895 1.7181 28 1 1.0210 -4.2656 2.6610 29 1 0.7244 -7.1496 1.7322 30 1 1.4466 -7.4548 0.1342 31 1 3.5750 -8.5991 -0.0700 32 1 5.1613 -10.1834 0.9483 33 1 5.0875 -10.6130 3.3718 34 1 3.4333 -9.4516 4.7783 35 1 1.8529 -7.8607 3.7613 36 1 3.0978 -3.4838 0.6360 37 1 2.5553 -3.9366 -1.0119 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260586081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:43 Heat of formation + Delta-G solvation = -40.920187 kcal Electronic energy + Delta-G solvation = -17063.640096 eV Core-core repulsion = 14383.893044 eV Total energy + Delta-G solvation = -2679.747052 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39659 -38.07184 -35.54550 -32.41305 -31.57966 -30.96122 -28.11690 -27.21286 -25.56322 -23.72161 -22.63295 -21.33981 -19.73015 -19.06861 -16.99270 -16.70643 -15.84099 -15.41590 -15.32284 -14.71283 -14.37321 -13.94238 -13.61298 -13.38369 -12.98276 -12.62872 -12.34111 -12.03633 -11.64068 -11.26816 -11.16046 -10.98001 -10.82311 -10.69702 -10.54662 -10.18685 -9.83976 -9.53130 -9.28131 -8.98503 -8.91980 -8.80133 -8.71674 -8.34755 -5.97938 -4.00263 1.22939 1.34349 3.35138 3.39291 3.42390 3.61020 4.30328 4.48442 4.77704 4.86905 4.96611 5.08063 5.26391 5.34050 5.40980 5.48108 5.57828 5.65229 5.68433 5.88256 5.91742 5.98691 6.20150 6.37944 6.41915 6.57318 6.58315 6.62383 6.78319 6.82591 6.92246 7.00902 7.21292 7.34678 7.70540 7.75281 7.93662 8.04590 8.49388 9.02404 9.63506 11.12075 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.045818 B = 0.003967 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.969772 B = 7056.968998 C = 7221.607205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.050 3.950 10 H 0.031 0.969 11 C -0.096 4.096 12 C -0.146 4.146 13 C 0.080 3.920 14 H 0.056 0.944 15 O -0.375 6.375 16 C 0.100 3.900 17 C -0.082 4.082 18 C -0.100 4.100 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.108 4.108 24 H 0.260 0.740 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 -18.009 4.192 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.031 3.969 10 H 0.050 0.950 11 C -0.134 4.134 12 C -0.184 4.184 13 C 0.023 3.977 14 H 0.074 0.926 15 O -0.295 6.295 16 C 0.023 3.977 17 C -0.082 4.082 18 C -0.118 4.118 19 C -0.143 4.143 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.118 4.118 23 C -0.146 4.146 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.084 0.916 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.842 -17.832 4.266 18.734 hybrid contribution 0.131 0.881 -0.010 0.890 sum 3.973 -16.952 4.256 17.924 Atomic orbital electron populations 1.69964 1.05884 1.26537 1.50592 1.24984 0.94847 0.99022 0.95136 0.86688 0.79614 0.83240 0.78634 1.20292 1.21377 1.20270 1.21110 0.92851 0.90390 1.50732 0.92588 1.19406 0.92365 0.91387 0.93712 0.95040 1.22044 1.00901 0.90528 0.99945 1.22732 0.97896 0.99183 0.98626 1.23264 0.92382 0.87897 0.94175 0.92581 1.88021 1.43766 1.15161 1.82511 1.21280 0.94095 0.83414 0.98928 1.19744 0.97563 0.96938 0.93947 1.21102 0.94599 0.96080 1.00064 1.21134 0.99162 0.98820 0.95208 1.21155 0.98734 0.99935 0.94064 1.21136 0.96040 0.97342 0.99796 1.21108 0.99012 0.97383 0.94295 1.22671 0.99269 0.94104 0.98558 0.93059 0.92834 0.92694 0.93612 0.92259 0.92846 0.92893 0.85911 0.86068 0.86235 0.86068 0.85907 0.91569 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 12.63 55.43 0.70 -25.14 16 2 C 0.06 1.73 5.35 -17.82 -0.10 1.63 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.29 8.37 -34.44 -0.29 -14.58 16 8 H 0.06 1.54 7.77 -52.49 -0.41 1.14 16 9 C 0.05 1.26 2.72 -90.11 -0.25 1.01 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.10 -2.27 5.60 -25.61 -0.14 -2.42 16 12 C -0.15 -2.87 6.56 -25.62 -0.17 -3.03 16 13 C 0.08 1.51 3.33 -25.10 -0.08 1.43 16 14 H 0.06 0.98 7.84 -51.93 -0.41 0.58 16 15 O -0.37 -6.75 10.04 -35.23 -0.35 -7.10 16 16 C 0.10 1.41 5.91 36.00 0.21 1.62 16 17 C -0.08 -1.09 5.51 -104.63 -0.58 -1.67 16 18 C -0.10 -1.21 9.70 -39.59 -0.38 -1.60 16 19 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 21 C -0.13 -1.33 10.05 -39.59 -0.40 -1.73 16 22 C -0.10 -1.22 9.70 -39.59 -0.38 -1.61 16 23 C -0.11 -2.35 6.00 -24.77 -0.15 -2.50 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.05 1.35 7.84 -51.93 -0.41 0.94 16 26 H 0.05 1.36 8.06 -51.93 -0.42 0.94 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 29 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 36 H 0.07 1.50 8.05 -51.93 -0.42 1.08 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -29.72 309.21 -9.34 -39.06 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.83 Total: -1.22 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -3.50 Total: -26.76 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.70 Total: -25.14 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.35 Total: -7.10 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.72 -9.34 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260586081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.859 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds